Wall clock time and date at job start Wed Apr 1 2020 00:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45195 * 109.47100 * 2 1 4 4 C 1.34829 * 116.99934 * 179.97438 * 3 2 1 5 5 O 1.21580 * 119.99931 * 0.02562 * 4 3 2 6 6 C 1.46884 * 120.00230 * 180.02562 * 4 3 2 7 7 C 1.34422 * 123.16621 * 0.02562 * 6 4 3 8 8 S 1.75493 * 110.86626 * 179.97438 * 7 6 4 9 9 C 1.75557 * 92.22155 * 359.82583 * 8 7 6 10 10 N 1.38485 * 124.88992 * 180.19039 * 9 8 7 11 11 C 1.34774 * 119.99698 * 0.14067 * 10 9 8 12 12 O 1.21277 * 120.00386 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00036 * 180.02562 * 11 10 9 14 14 H 1.08994 * 109.46986 * 59.99743 * 13 11 10 15 15 C 1.53001 * 109.46729 * 299.99639 * 13 11 10 16 16 C 1.50702 * 109.47279 * 179.97438 * 13 11 10 17 17 H 1.07998 * 119.99619 * 359.97438 * 16 13 11 18 18 C 1.37877 * 119.99969 * 179.97438 * 16 13 11 19 19 N 1.31516 * 120.00040 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 119.99836 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.46907 * 60.00020 * 20 18 16 22 22 H 1.48500 * 109.46863 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47137 * 299.99747 * 20 18 16 24 24 C 1.36801 * 110.22900 * 0.30884 * 9 8 7 25 25 C 1.46297 * 123.49454 * 179.89582 * 24 9 8 26 26 O 1.21646 * 120.00586 * 269.71369 * 25 24 9 27 27 O 1.34907 * 119.99256 * 89.70558 * 25 24 9 28 28 H 1.09003 * 109.46834 * 299.99991 * 1 2 3 29 29 H 1.08999 * 109.47021 * 59.99695 * 1 2 3 30 30 H 1.08999 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46793 * 239.99979 * 2 1 3 32 32 H 1.08999 * 109.47021 * 120.00305 * 2 1 3 33 33 H 1.07998 * 124.57020 * 359.96013 * 7 6 4 34 34 H 0.96996 * 120.00127 * 180.13294 * 10 9 8 35 35 H 1.08997 * 109.47432 * 60.00360 * 15 13 11 36 36 H 1.09006 * 109.46723 * 180.02562 * 15 13 11 37 37 H 1.08994 * 109.47472 * 299.99806 * 15 13 11 38 38 H 0.96994 * 119.99983 * 180.02562 * 19 18 16 39 39 H 0.96700 * 114.00383 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3507 1.5456 0.0005 5 8 4.0913 0.5814 0.0005 6 6 3.9122 2.9029 0.0011 7 6 3.1535 4.0125 0.0017 8 16 4.1544 5.4540 0.0030 9 6 5.6342 4.5094 0.0082 10 7 6.9131 5.0407 0.0150 11 6 7.0875 6.3770 0.0211 12 8 6.1246 7.1144 0.0201 13 6 8.4792 6.9552 0.0279 14 1 9.0147 6.6238 -0.8616 15 6 9.2228 6.4797 1.2777 16 6 8.3980 8.4601 0.0332 17 1 7.4349 8.9488 0.0313 18 6 9.5531 9.2128 0.0404 19 7 10.7259 8.6175 0.0422 20 14 9.4524 11.0781 0.0463 21 1 8.7218 11.5305 1.2573 22 1 10.8238 11.6477 0.0544 23 1 8.7317 11.5387 -1.1677 24 6 5.3422 3.1729 0.0018 25 6 6.3618 2.1238 0.0017 26 8 6.7862 1.6880 -1.0518 27 8 6.8316 1.6398 1.1701 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 2.0735 4.0165 0.0011 34 1 7.6832 4.4510 0.0156 35 1 9.2816 5.3914 1.2735 36 1 10.2292 6.8983 1.2829 37 1 8.6873 6.8112 2.1673 38 1 11.5385 9.1470 0.0477 39 1 6.4349 2.0469 1.9524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573793880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:53 Heat of formation + Delta-G solvation = -182.463488 kcal Electronic energy + Delta-G solvation = -27066.350701 eV Core-core repulsion = 22873.011157 eV Total energy + Delta-G solvation = -4193.339544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.86156 -40.14250 -39.47921 -37.18835 -36.53329 -36.28229 -34.56548 -34.11865 -32.04311 -30.92836 -29.16413 -26.01656 -25.38271 -24.44713 -23.05281 -22.95982 -21.42737 -20.81090 -19.86287 -18.81210 -17.75258 -17.22264 -16.81921 -16.55894 -16.35072 -16.30161 -15.63211 -15.52422 -15.06249 -14.89417 -14.50920 -14.42801 -13.94412 -13.56753 -13.41161 -13.16542 -13.09521 -12.83369 -12.69520 -12.24519 -11.96986 -11.89148 -11.56319 -11.38046 -11.20825 -11.01469 -10.91638 -10.86394 -10.81464 -10.65154 -10.52457 -10.25203 -10.16275 -9.26452 -9.21618 -8.68376 -8.57423 -8.21233 -6.22995 -4.29256 0.55774 1.04522 1.20873 1.68353 2.14945 2.42581 2.78289 3.08337 3.11803 3.24906 3.28894 3.34107 3.55222 4.30289 4.51687 4.54200 4.60202 4.67620 4.81669 4.94152 5.07842 5.10761 5.31869 5.42623 5.53684 5.59442 5.60981 5.71016 6.14330 6.20951 6.35088 6.52032 6.59717 7.08791 7.17465 7.27649 7.53333 7.56204 7.68838 7.79603 7.98429 8.36360 8.78455 9.37590 10.84393 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.022743 B = 0.002797 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.832061 B =10007.816780 C =10998.207691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.352 6.352 4 C 0.524 3.476 5 O -0.497 6.497 6 C -0.089 4.089 7 C -0.217 4.217 8 S 0.310 5.690 9 C 0.105 3.895 10 N -0.643 5.643 11 C 0.516 3.484 12 O -0.497 6.497 13 C 0.037 3.963 14 H 0.064 0.936 15 C -0.138 4.138 16 C -0.512 4.512 17 H 0.077 0.923 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.251 4.251 25 C 0.571 3.429 26 O -0.454 6.454 27 O -0.491 6.491 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.182 0.818 34 H 0.420 0.580 35 H 0.014 0.986 36 H 0.101 0.899 37 H 0.036 0.964 38 H 0.265 0.735 39 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.883 -12.479 3.582 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.269 6.269 4 C 0.367 3.633 5 O -0.386 6.386 6 C -0.103 4.103 7 C -0.354 4.354 8 S 0.572 5.428 9 C -0.115 4.115 10 N -0.286 5.286 11 C 0.308 3.692 12 O -0.371 6.371 13 C 0.016 3.984 14 H 0.082 0.918 15 C -0.196 4.196 16 C -0.551 4.551 17 H 0.095 0.905 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.733 3.267 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.268 4.268 25 C 0.408 3.592 26 O -0.337 6.337 27 O -0.299 6.299 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.199 0.801 34 H 0.258 0.742 35 H 0.033 0.967 36 H 0.119 0.881 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -16.804 -11.130 2.706 20.337 hybrid contribution 0.389 -0.854 0.392 1.017 sum -16.415 -11.984 3.098 20.559 Atomic orbital electron populations 1.21813 0.92431 1.03060 1.03617 1.23063 0.95348 0.79796 1.02889 1.86543 1.23331 1.32595 1.84447 1.20450 0.80732 0.89050 0.73100 1.90922 1.60120 1.42208 1.45332 1.18060 0.90172 0.90723 1.11352 1.26753 1.05535 0.98424 1.04703 1.85659 0.88314 1.00250 1.68584 1.22520 0.93515 0.94415 1.01044 1.43781 1.04136 1.09772 1.70928 1.22951 0.95725 0.78577 0.71940 1.90459 1.42542 1.57278 1.46814 1.18977 0.84144 0.97502 0.97784 0.91830 1.21827 1.04862 0.96061 0.96825 1.20988 0.93919 0.88354 1.51796 0.90514 1.24948 0.95092 0.99372 0.94537 1.69839 0.97431 1.35826 1.49871 0.86425 0.77030 0.84330 0.78930 1.20046 1.21223 1.20030 1.19445 0.93103 0.91659 1.22563 1.19219 0.78160 0.78638 0.83209 1.90893 1.57114 1.57550 1.28141 1.84997 1.64195 1.63167 1.17497 0.91392 0.91374 0.90129 0.91027 0.91034 0.80086 0.74184 0.96678 0.88063 0.94451 0.92494 0.73450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 37.16 0.38 -0.46 16 2 C 0.06 0.53 6.20 37.16 0.23 0.76 16 3 O -0.35 -3.87 9.82 -40.84 -0.40 -4.27 16 4 C 0.52 7.09 7.91 34.23 0.27 7.36 16 5 O -0.50 -8.07 15.02 -19.33 -0.29 -8.36 16 6 C -0.09 -1.17 5.94 -104.84 -0.62 -1.79 16 7 C -0.22 -2.37 10.68 29.38 0.31 -2.06 16 8 S 0.31 4.09 20.25 -107.50 -2.18 1.91 16 9 C 0.10 1.57 7.14 -15.06 -0.11 1.46 16 10 N -0.64 -10.43 5.25 -10.54 -0.06 -10.49 16 11 C 0.52 10.20 7.11 -10.99 -0.08 10.12 16 12 O -0.50 -10.57 12.91 5.56 0.07 -10.50 16 13 C 0.04 0.83 2.64 -92.92 -0.25 0.58 16 14 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 15 C -0.14 -2.84 8.87 37.16 0.33 -2.51 16 16 C -0.51 -13.18 8.38 -34.44 -0.29 -13.47 16 17 H 0.08 2.05 6.75 -52.49 -0.35 1.69 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 19 N -0.89 -23.46 11.32 55.43 0.63 -22.84 16 20 Si 0.91 20.43 29.54 -169.99 -5.02 15.40 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C -0.25 -3.66 5.59 -104.27 -0.58 -4.24 16 25 C 0.57 9.26 5.56 33.97 0.19 9.45 16 26 O -0.45 -9.11 17.96 -19.38 -0.35 -9.46 16 27 O -0.49 -6.58 13.61 -41.06 -0.56 -7.14 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.18 1.46 7.97 -52.49 -0.42 1.04 16 34 H 0.42 6.25 7.58 -40.82 -0.31 5.94 16 35 H 0.01 0.25 7.56 -51.93 -0.39 -0.14 16 36 H 0.10 2.35 6.07 -51.93 -0.32 2.04 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 39 H 0.41 3.28 8.79 45.56 0.40 3.68 16 LS Contribution 358.62 15.07 5.40 5.40 Total: -1.00 -32.47 358.62 -6.54 -39.01 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -3.48 Total: 4.60 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -0.30 Total: 6.72 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.57 Total: -33.32 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -1.53 Total: -39.73 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -2.18 Total: 1.91 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.47 -6.54 -39.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573793880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.453 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds