Wall clock time and date at job start Tue Mar 31 2020 23:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00086 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00037 * 3 2 1 6 6 H 1.48490 * 109.46901 * 330.00013 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99860 * 359.97438 * 7 2 1 9 9 S 1.76189 * 120.00013 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00097 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47173 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00120 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99741 * 179.97438 * 11 10 9 14 14 C 1.47024 * 125.64967 * 359.69284 * 13 11 10 15 15 C 1.54331 * 107.26488 * 178.85058 * 14 13 11 16 16 C 1.55162 * 103.02217 * 338.14016 * 15 14 13 17 17 H 1.08997 * 111.00509 * 277.23156 * 16 15 14 18 18 N 1.46499 * 111.00361 * 153.38018 * 16 15 14 19 19 C 1.34770 * 120.00061 * 161.35013 * 18 16 15 20 20 O 1.21587 * 119.99984 * 0.02562 * 19 18 16 21 21 C 1.47691 * 120.00380 * 179.97438 * 19 18 16 22 22 C 1.39483 * 122.10730 * 179.73732 * 21 19 18 23 23 C 1.34998 * 111.68766 * 179.78465 * 22 21 19 24 24 S 1.71757 * 105.44837 * 0.43724 * 23 22 21 25 25 N 1.30600 * 122.10001 * 0.03391 * 21 19 18 26 26 C 1.47429 * 125.64680 * 180.02562 * 13 11 10 27 27 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47161 * 300.00107 * 10 9 7 29 29 H 1.09002 * 109.46892 * 59.99887 * 10 9 7 30 30 H 1.08996 * 109.88590 * 298.39633 * 14 13 11 31 31 H 1.08995 * 109.87927 * 59.56159 * 14 13 11 32 32 H 1.09008 * 110.85183 * 219.67485 * 15 14 13 33 33 H 1.09000 * 110.51653 * 96.45453 * 15 14 13 34 34 H 0.97003 * 119.99911 * 341.35539 * 18 16 15 35 35 H 1.08010 * 124.15291 * 0.02562 * 22 21 19 36 36 H 1.08001 * 127.27646 * 180.13763 * 23 22 21 37 37 H 1.08995 * 110.36645 * 322.93178 * 26 13 11 38 38 H 1.09004 * 110.36415 * 85.25283 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5731 -3.2326 -0.0010 12 8 6.3441 -2.2964 -0.0015 13 7 6.0457 -4.4947 -0.0005 14 6 5.2273 -5.7161 0.0075 15 6 6.1962 -6.9169 -0.0246 16 6 7.4946 -6.3029 -0.6117 17 1 7.4502 -6.2623 -1.7000 18 7 8.6757 -7.0450 -0.1638 19 6 9.8396 -6.9267 -0.8328 20 8 9.9096 -6.2037 -1.8079 21 6 11.0304 -7.6743 -0.3809 22 6 12.2550 -7.5887 -1.0433 23 6 13.1972 -8.3524 -0.4505 24 16 12.4087 -9.1029 0.8780 25 7 11.0016 -8.4617 0.6607 26 6 7.4689 -4.8793 -0.0010 27 1 -0.4850 0.8401 0.0004 28 1 3.6440 -3.4315 0.8904 29 1 3.6433 -3.4318 -0.8896 30 1 4.6213 -5.7505 0.9129 31 1 4.5844 -5.7373 -0.8723 32 1 5.8152 -7.7058 -0.6733 33 1 6.3697 -7.2949 0.9829 34 1 8.6199 -7.6215 0.6143 35 1 12.4290 -6.9825 -1.9201 36 1 14.2277 -8.4708 -0.7514 37 1 8.0475 -4.1915 -0.6176 38 1 7.8576 -4.8960 1.0173 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578345751.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:28 Heat of formation + Delta-G solvation = -45.988876 kcal Electronic energy + Delta-G solvation = -23561.954988 eV Core-core repulsion = 19849.579050 eV Total energy + Delta-G solvation = -3712.375939 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74528 -40.99232 -39.53703 -38.41759 -35.56428 -34.68109 -32.79716 -32.11555 -30.94598 -29.41071 -27.88336 -27.35927 -24.72978 -23.08526 -22.04695 -21.27585 -20.80780 -19.71025 -19.32746 -18.81331 -18.19799 -17.82542 -17.15801 -16.80803 -16.65024 -16.43408 -15.84217 -15.62524 -15.45505 -15.01094 -14.91467 -14.57105 -14.52888 -14.23202 -14.18683 -13.91099 -13.50579 -13.35797 -13.03021 -12.87151 -12.70935 -12.62650 -12.37471 -12.22340 -11.92198 -11.88774 -11.21737 -11.18165 -11.11513 -10.86958 -10.55380 -10.43550 -9.83427 -9.75116 -9.02891 -8.52529 -6.23889 -0.46529 0.51828 0.68514 0.77456 0.92678 1.29951 1.40535 1.45125 1.50110 1.78494 2.06087 2.17960 2.24314 2.66640 2.85576 3.24433 3.44880 3.64936 3.75569 3.83741 3.91600 4.11590 4.15120 4.24964 4.38414 4.38694 4.53278 4.55736 4.69152 4.72966 4.85056 4.88422 5.01717 5.12686 5.21794 5.36237 5.70127 6.10542 6.25793 6.32881 6.92658 6.95846 6.98536 8.59590 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.033901 B = 0.001871 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.728030 B =14959.054960 C =15386.290736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.047 3.953 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.240 1.240 6 H -0.258 1.258 7 C -0.527 4.527 8 H 0.066 0.934 9 S -0.180 6.180 10 C -0.099 4.099 11 C 0.546 3.454 12 O -0.566 6.566 13 N -0.614 5.614 14 C 0.090 3.910 15 C -0.117 4.117 16 C 0.140 3.860 17 H 0.097 0.903 18 N -0.689 5.689 19 C 0.588 3.412 20 O -0.563 6.563 21 C 0.024 3.976 22 C -0.158 4.158 23 C -0.269 4.269 24 S 0.545 5.455 25 N -0.547 5.547 26 C 0.097 3.903 27 H 0.277 0.723 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.107 0.893 34 H 0.422 0.578 35 H 0.167 0.833 36 H 0.220 0.780 37 H 0.052 0.948 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.469 -27.933 2.480 38.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.164 1.164 6 H -0.182 1.182 7 C -0.674 4.674 8 H 0.084 0.916 9 S 0.046 5.954 10 C -0.250 4.250 11 C 0.334 3.666 12 O -0.445 6.445 13 N -0.349 5.349 14 C -0.032 4.032 15 C -0.155 4.155 16 C 0.034 3.966 17 H 0.115 0.885 18 N -0.341 5.341 19 C 0.371 3.629 20 O -0.440 6.440 21 C -0.148 4.148 22 C -0.190 4.190 23 C -0.418 4.418 24 S 0.700 5.300 25 N -0.384 5.384 26 C -0.027 4.027 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.139 0.861 33 H 0.126 0.874 34 H 0.261 0.739 35 H 0.184 0.816 36 H 0.237 0.763 37 H 0.070 0.930 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 27.005 -27.073 3.506 38.399 hybrid contribution -1.031 1.062 -1.357 2.008 sum 25.973 -26.011 2.149 36.821 Atomic orbital electron populations 1.70008 1.07142 1.29002 1.49041 1.25521 0.95274 1.02106 0.92924 0.85900 0.80626 0.79835 0.80219 1.18659 1.16415 1.18190 1.22418 0.89865 0.96817 1.58312 0.91627 1.84805 1.06893 1.06091 1.97591 1.23189 0.94760 0.99581 1.07468 1.19784 0.89748 0.81623 0.75403 1.90695 1.59608 1.43144 1.51020 1.48274 1.08104 1.05247 1.73320 1.22438 0.94579 0.81870 1.04341 1.22942 0.91182 0.96981 1.04366 1.22007 0.85484 0.89187 0.99957 0.88535 1.45548 1.08668 1.47207 1.32670 1.17664 0.82690 0.80291 0.82252 1.90838 1.84634 1.40376 1.28200 1.20908 0.96585 1.01821 0.95512 1.21492 0.90750 1.03138 1.03662 1.27636 1.07282 1.03203 1.03669 1.80341 0.91816 1.35954 1.21876 1.71961 1.28152 1.16691 1.21609 1.22575 0.82142 0.96762 1.01238 0.91331 0.86587 0.86773 0.88885 0.89523 0.86088 0.87410 0.73911 0.81585 0.76290 0.92974 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.80 13.97 21.65 0.30 -55.50 16 2 C 0.05 2.81 5.50 84.86 0.47 3.27 16 3 Si 0.91 45.75 27.74 68.60 1.90 47.65 16 4 H -0.26 -12.80 7.11 99.48 0.71 -12.10 16 5 H -0.24 -12.16 6.74 99.48 0.67 -11.49 16 6 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.53 -30.93 10.04 67.96 0.68 -30.25 16 8 H 0.07 4.02 8.03 -2.91 -0.02 4.00 16 9 S -0.18 -9.40 18.55 -56.49 -1.05 -10.45 16 10 C -0.10 -3.90 5.35 71.24 0.38 -3.52 16 11 C 0.55 20.76 7.87 87.66 0.69 21.45 16 12 O -0.57 -26.75 16.12 -3.03 -0.05 -26.80 16 13 N -0.61 -16.92 3.33 -811.74 -2.70 -19.62 16 14 C 0.09 1.51 6.49 86.73 0.56 2.07 16 15 C -0.12 -1.22 6.57 31.79 0.21 -1.01 16 16 C 0.14 2.50 3.32 46.39 0.15 2.66 16 17 H 0.10 2.04 7.73 -2.39 -0.02 2.02 16 18 N -0.69 -11.38 5.23 -438.93 -2.29 -13.68 16 19 C 0.59 12.84 7.81 86.74 0.68 13.51 16 20 O -0.56 -16.59 16.40 -3.99 -0.07 -16.66 16 21 C 0.02 0.42 6.66 42.13 0.28 0.70 16 22 C -0.16 -2.20 9.98 21.82 0.22 -1.99 16 23 C -0.27 -1.75 11.41 67.07 0.77 -0.98 16 24 S 0.55 3.34 23.20 -56.49 -1.31 2.03 16 25 N -0.55 -7.41 10.71 -75.32 -0.81 -8.21 16 26 C 0.10 2.48 6.60 86.86 0.57 3.05 16 27 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.12 4.11 8.14 -2.39 -0.02 4.09 16 29 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.12 0.72 8.14 -2.38 -0.02 0.71 16 33 H 0.11 0.71 8.00 -2.39 -0.02 0.69 16 34 H 0.42 5.03 7.98 -92.71 -0.74 4.29 16 35 H 0.17 2.43 7.99 -2.91 -0.02 2.41 16 36 H 0.22 -0.13 8.06 -2.91 -0.02 -0.15 16 37 H 0.05 1.69 8.04 -2.39 -0.02 1.67 16 38 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -84.01 356.76 -0.08 -84.09 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.33 Total: 8.19 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 5.66 Total: 8.97 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -5.50 Total: -97.01 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -0.11 Total: -43.46 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.90 Total: 47.65 kcal Atomic # 16 Polarization: -6.06 SS G_CDS: -2.36 Total: -8.42 kcal Total: -84.01 -0.08 -84.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578345751.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.101 kcal (2) G-P(sol) polarization free energy of solvation -84.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds