Wall clock time and date at job start Tue Mar 31 2020 23:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00048 * 2 1 4 4 H 1.48501 * 109.46990 * 239.99835 * 3 2 1 5 5 H 1.48502 * 109.47293 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47363 * 119.99852 * 3 2 1 7 7 C 1.38793 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00676 * 180.02562 * 7 2 1 9 9 S 1.76211 * 119.99627 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99845 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46791 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00212 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99914 * 180.02562 * 11 10 9 14 14 C 1.47073 * 136.05799 * 5.08811 * 13 11 10 15 15 C 1.53496 * 87.98546 * 207.08644 * 14 13 11 16 16 C 1.47072 * 136.05943 * 185.03200 * 13 11 10 17 17 H 1.09002 * 113.46726 * 267.75299 * 16 13 11 18 18 C 1.53002 * 113.46442 * 38.13654 * 16 13 11 19 19 N 1.46495 * 109.46791 * 184.24370 * 18 16 13 20 20 C 1.34779 * 119.99641 * 175.01527 * 19 18 16 21 21 O 1.21572 * 120.00348 * 0.02562 * 20 19 18 22 22 C 1.47693 * 119.99844 * 179.97438 * 20 19 18 23 23 C 1.39490 * 122.10393 * 180.02562 * 22 20 19 24 24 C 1.34995 * 111.68490 * 179.97438 * 23 22 20 25 25 S 1.71757 * 105.45223 * 359.97438 * 24 23 22 26 26 N 1.30604 * 122.10468 * 359.97220 * 22 20 19 27 27 H 0.97007 * 120.00162 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46879 * 59.99846 * 10 9 7 29 29 H 1.09003 * 109.46995 * 299.99702 * 10 9 7 30 30 H 1.09004 * 113.46554 * 321.86210 * 14 13 11 31 31 H 1.08996 * 113.47296 * 92.30388 * 14 13 11 32 32 H 1.08999 * 114.20764 * 220.34710 * 15 14 13 33 33 H 1.09004 * 114.21180 * 87.51090 * 15 14 13 34 34 H 1.09001 * 109.46965 * 64.24177 * 18 16 13 35 35 H 1.09005 * 109.47028 * 304.24312 * 18 16 13 36 36 H 0.96996 * 120.00276 * 355.01423 * 19 18 16 37 37 H 1.07998 * 124.15195 * 359.97438 * 23 22 20 38 38 H 1.08003 * 127.27428 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3430 0.0003 14 6 4.3019 -6.5143 0.0918 15 6 4.1432 -7.8228 -0.6948 16 6 2.7326 -7.8068 -0.0896 17 1 2.6703 -8.2978 0.8816 18 6 1.6475 -8.2766 -1.0606 19 7 1.5432 -9.7369 -1.0067 20 6 0.5805 -10.3699 -1.7061 21 8 -0.2009 -9.7291 -2.3820 22 6 0.4756 -11.8421 -1.6522 23 6 -0.5027 -12.5419 -2.3585 24 6 -0.4054 -13.8735 -2.1590 25 16 0.9250 -14.0805 -1.0927 26 7 1.2937 -12.5707 -0.9412 27 1 -0.4851 0.8401 -0.0004 28 1 3.1245 -3.7312 0.8905 29 1 3.1245 -3.7313 -0.8895 30 1 4.8634 -5.7501 -0.4458 31 1 4.6587 -6.6612 1.1112 32 1 4.7731 -8.6378 -0.3384 33 1 4.1663 -7.6991 -1.7775 34 1 1.9077 -7.9680 -2.0731 35 1 0.6920 -7.8334 -0.7799 36 1 2.1668 -10.2481 -0.4677 37 1 -1.2466 -12.0757 -2.9875 38 1 -1.0319 -14.6456 -2.5808 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584705796.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:17 Heat of formation + Delta-G solvation = -12.370745 kcal Electronic energy + Delta-G solvation = -23450.946256 eV Core-core repulsion = 19740.028109 eV Total energy + Delta-G solvation = -3710.918147 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.81944 -41.27348 -39.42576 -38.88747 -35.98750 -34.61214 -32.67221 -32.15014 -29.98681 -29.49335 -27.68412 -27.26693 -24.30132 -23.23383 -22.63292 -21.38416 -20.31557 -19.61014 -19.24809 -18.90460 -18.01776 -17.41347 -16.91101 -16.85282 -16.75110 -16.52284 -15.91454 -15.73279 -15.48073 -15.23517 -14.70507 -14.53333 -14.42421 -14.23433 -13.94841 -13.83160 -13.42447 -13.18655 -13.03219 -12.87772 -12.65271 -12.44790 -12.38243 -12.25707 -11.77834 -11.70840 -11.21294 -11.14990 -10.89801 -10.87152 -10.37775 -10.31744 -9.82917 -9.76270 -8.71623 -8.36433 -6.16308 -0.47326 0.52082 0.68367 0.76249 1.15440 1.39316 1.42938 1.51733 1.52269 1.75902 2.06140 2.20820 2.25716 2.97377 3.16943 3.31370 3.59773 3.64381 3.72118 3.82130 3.93768 4.00068 4.22660 4.38047 4.41868 4.44355 4.52231 4.55264 4.62654 4.68659 4.83924 4.92884 4.95480 5.13194 5.24554 5.30909 5.38653 6.17217 6.32433 6.58359 6.96896 7.03888 7.07934 8.72718 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.028375 B = 0.001894 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.543872 B =14778.740442 C =15536.100773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.002 2.998 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.116 4.116 11 C 0.556 3.444 12 O -0.566 6.566 13 N -0.650 5.650 14 C 0.097 3.903 15 C -0.125 4.125 16 C 0.119 3.881 17 H 0.119 0.881 18 C 0.119 3.881 19 N -0.691 5.691 20 C 0.582 3.418 21 O -0.572 6.572 22 C 0.026 3.974 23 C -0.160 4.160 24 C -0.268 4.268 25 S 0.555 5.445 26 N -0.546 5.546 27 H 0.272 0.728 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.136 0.864 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.422 0.578 37 H 0.164 0.836 38 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.543 -33.940 -1.268 36.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.267 4.267 11 C 0.345 3.655 12 O -0.445 6.445 13 N -0.387 5.387 14 C -0.024 4.024 15 C -0.163 4.163 16 C 0.016 3.984 17 H 0.137 0.863 18 C -0.006 4.006 19 N -0.344 5.344 20 C 0.365 3.635 21 O -0.451 6.451 22 C -0.146 4.146 23 C -0.192 4.192 24 C -0.416 4.416 25 S 0.710 5.290 26 N -0.384 5.384 27 H 0.080 0.920 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.133 0.867 32 H 0.154 0.846 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.260 0.740 37 H 0.181 0.819 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 11.437 -34.312 -0.481 36.171 hybrid contribution -0.118 2.539 -0.909 2.699 sum 11.319 -31.773 -1.390 33.757 Atomic orbital electron populations 1.70190 1.08077 1.28741 1.47829 1.26191 0.96008 1.03486 0.93639 0.84959 0.77764 0.75394 0.79586 1.18576 1.20360 1.18450 1.23154 0.95329 0.91751 1.59163 0.89791 1.85669 1.10649 0.99466 1.97056 1.23244 1.03336 0.93696 1.06394 1.19748 0.85156 0.85670 0.74919 1.90710 1.17227 1.85611 1.50909 1.49821 1.10495 1.05331 1.73063 1.23350 0.78501 0.97891 1.02685 1.23569 0.92934 0.98656 1.01109 1.23154 0.95669 0.80200 0.99396 0.86343 1.21415 0.99619 0.79650 0.99893 1.45442 1.33159 1.06974 1.48809 1.17751 0.80475 0.86042 0.79234 1.90833 1.43589 1.67512 1.43133 1.20808 0.97452 0.94532 1.01848 1.21464 1.00849 0.94026 1.02870 1.27632 1.07430 1.00108 1.06470 1.80235 1.15883 1.01552 1.31345 1.71911 1.30272 1.09999 1.26187 0.91954 0.87441 0.87639 0.89022 0.86725 0.84599 0.88551 0.91782 0.93861 0.73959 0.81892 0.76106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.50 13.22 21.65 0.29 -57.21 16 2 C 0.01 0.66 5.49 84.86 0.47 1.13 16 3 Si 1.00 44.34 29.55 68.60 2.03 46.37 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.55 -32.02 9.50 67.95 0.65 -31.37 16 8 H 0.08 4.53 7.80 -2.91 -0.02 4.51 16 9 S -0.16 -9.05 20.57 -56.49 -1.16 -10.21 16 10 C -0.12 -4.89 5.99 71.24 0.43 -4.47 16 11 C 0.56 22.51 7.97 87.66 0.70 23.20 16 12 O -0.57 -28.80 15.46 -3.03 -0.05 -28.85 16 13 N -0.65 -17.83 3.57 -833.60 -2.97 -20.80 16 14 C 0.10 1.43 8.42 83.18 0.70 2.13 16 15 C -0.13 -1.39 8.02 30.93 0.25 -1.14 16 16 C 0.12 2.41 4.07 41.80 0.17 2.58 16 17 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 18 C 0.12 3.28 5.47 86.38 0.47 3.75 16 19 N -0.69 -15.67 5.55 -466.11 -2.59 -18.25 16 20 C 0.58 16.14 7.81 86.74 0.68 16.82 16 21 O -0.57 -21.17 16.65 -3.94 -0.07 -21.24 16 22 C 0.03 0.54 6.66 42.13 0.28 0.82 16 23 C -0.16 -2.70 9.98 21.83 0.22 -2.48 16 24 C -0.27 -2.21 11.41 67.07 0.76 -1.45 16 25 S 0.56 4.09 23.20 -56.49 -1.31 2.78 16 26 N -0.55 -8.58 10.71 -75.31 -0.81 -9.39 16 27 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 28 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 29 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 30 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.10 1.20 7.95 -2.39 -0.02 1.18 16 34 H 0.06 1.89 7.89 -2.39 -0.02 1.87 16 35 H 0.04 1.65 7.14 -2.38 -0.02 1.64 16 36 H 0.42 6.75 7.94 -92.71 -0.74 6.01 16 37 H 0.16 2.96 7.99 -2.91 -0.02 2.94 16 38 H 0.22 0.18 8.06 -2.91 -0.02 0.16 16 Total: -1.00 -92.21 362.53 -0.49 -92.70 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.37 Total: 14.57 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 5.77 Total: 9.52 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -6.08 Total: -105.65 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -0.11 Total: -50.08 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -4.96 SS G_CDS: -2.47 Total: -7.43 kcal Total: -92.21 -0.49 -92.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584705796.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.334 kcal (2) G-P(sol) polarization free energy of solvation -92.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds