Wall clock time and date at job start Tue Mar 31 2020 23:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37966 * 119.92311 * 2 1 4 4 C 1.39608 * 119.84287 * 180.02562 * 3 2 1 5 5 C 1.47731 * 120.14879 * 179.97438 * 4 3 2 6 6 O 1.21474 * 119.99592 * 359.97438 * 5 4 3 7 7 O 1.34705 * 120.00198 * 179.97438 * 5 4 3 8 8 C 1.39648 * 119.70231 * 359.97438 * 4 3 2 9 9 C 1.37925 * 119.85013 * 359.71297 * 8 4 3 10 10 C 1.38347 * 119.92358 * 179.97438 * 2 1 3 11 11 S 1.76200 * 119.84756 * 359.97438 * 10 2 1 12 12 O 1.42096 * 106.39882 * 181.45914 * 11 10 2 13 13 O 1.42103 * 106.40193 * 48.54386 * 11 10 2 14 14 N 1.65593 * 107.22178 * 295.00331 * 11 10 2 15 15 C 1.47584 * 134.49803 * 89.99723 * 14 11 10 16 16 C 1.53946 * 86.12025 * 155.36171 * 15 14 11 17 17 O 1.42897 * 113.74068 * 269.15867 * 16 15 14 18 18 C 1.50700 * 113.74246 * 137.95222 * 16 15 14 19 19 H 1.07998 * 119.99659 * 4.91778 * 18 16 15 20 20 C 1.37870 * 120.00275 * 184.91298 * 18 16 15 21 21 N 1.31521 * 119.99939 * 13.83955 * 20 18 16 22 22 Si 1.86793 * 120.00241 * 193.83635 * 20 18 16 23 23 H 1.48503 * 109.47305 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.47166 * 299.99995 * 22 20 18 25 25 H 1.48499 * 109.46987 * 59.99962 * 22 20 18 26 26 C 1.47585 * 134.49149 * 270.00557 * 14 11 10 27 27 H 1.08997 * 109.46894 * 270.02889 * 1 2 3 28 28 H 1.08997 * 109.46935 * 30.02505 * 1 2 3 29 29 H 1.08991 * 109.47042 * 150.02271 * 1 2 3 30 30 H 1.07995 * 120.08055 * 359.97438 * 3 2 1 31 31 H 0.96696 * 117.00628 * 180.02562 * 7 5 4 32 32 H 1.08004 * 120.07553 * 180.02562 * 8 4 3 33 33 H 1.08001 * 119.92934 * 180.28962 * 9 8 4 34 34 H 1.09003 * 113.76727 * 41.05741 * 15 14 11 35 35 H 1.09000 * 113.86995 * 269.68082 * 15 14 11 36 36 H 0.96698 * 114.00098 * 171.44601 * 17 16 15 37 37 H 0.97007 * 119.99483 * 5.87247 * 21 20 18 38 38 H 1.08994 * 113.77423 * 90.33548 * 26 14 11 39 39 H 1.09010 * 113.76672 * 318.93394 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1953 1.1957 0.0000 4 6 3.5914 1.1938 -0.0005 5 6 4.3351 2.4702 -0.0011 6 8 3.7319 3.5246 -0.0016 7 8 5.6822 2.4649 -0.0011 8 6 4.2816 -0.0202 -0.0005 9 6 3.5810 -1.2082 0.0060 10 6 2.1972 -1.1990 0.0005 11 16 1.3101 -2.7215 0.0019 12 8 2.2856 -3.7541 0.0369 13 8 0.3279 -2.6145 -1.0195 14 7 0.4862 -2.8075 1.4357 15 6 -0.8529 -2.3812 1.8865 16 6 -0.7262 -3.4782 2.9591 17 8 -1.2454 -4.7452 2.5504 18 6 -1.2143 -3.0548 4.3206 19 1 -1.6792 -2.0888 4.4511 20 6 -1.0674 -3.9006 5.3994 21 7 -0.2722 -4.9446 5.3130 22 14 -1.9978 -3.5638 6.9837 23 1 -1.6690 -4.6118 7.9832 24 1 -1.6057 -2.2336 7.5149 25 1 -3.4578 -3.5779 6.7130 26 6 0.7962 -3.3413 2.7763 27 1 -0.3633 0.0005 1.0276 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8901 -0.5134 30 1 1.6554 2.1310 -0.0004 31 1 6.1247 3.3247 -0.0011 32 1 5.3616 -0.0287 -0.0005 33 1 4.1136 -2.1478 0.0107 34 1 -1.6418 -2.5681 1.1579 35 1 -0.8803 -1.3702 2.2930 36 1 -1.0523 -5.4662 3.1650 37 1 0.2756 -5.0729 4.5228 38 1 1.2551 -2.6123 3.4442 39 1 1.3240 -4.2949 2.7582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600123394.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:26 Heat of formation + Delta-G solvation = -170.928241 kcal Electronic energy + Delta-G solvation = -27956.773961 eV Core-core repulsion = 23763.934623 eV Total energy + Delta-G solvation = -4192.839338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.68521 -40.53722 -40.11114 -38.57237 -37.26909 -37.13490 -36.11840 -34.26586 -34.25729 -32.77317 -29.41353 -28.38363 -27.08706 -26.50630 -26.13049 -23.33055 -22.47390 -21.68109 -20.17751 -19.88590 -19.17806 -18.94207 -18.36506 -18.21853 -17.44936 -16.85998 -16.70776 -16.44807 -16.04808 -15.79556 -15.64956 -15.31670 -15.19131 -14.92995 -14.79878 -14.51666 -14.17681 -13.97516 -13.84301 -13.62602 -13.40083 -13.22489 -13.12689 -12.86674 -12.73248 -12.71581 -12.52857 -12.49105 -12.27584 -12.19319 -11.88418 -11.76519 -11.06567 -10.78458 -10.67351 -10.36974 -10.07503 -9.81230 -8.60197 -6.40858 -1.09812 -0.77858 0.01212 1.07334 1.64518 1.68324 1.72046 1.79452 1.89013 2.28414 2.57212 2.61471 2.93643 3.02789 3.38473 3.43752 3.54222 3.81025 3.91556 3.98102 4.04512 4.12704 4.27364 4.40156 4.46263 4.55285 4.62577 4.64952 4.76548 4.77118 4.84876 4.92227 5.00262 5.01378 5.15183 5.38504 5.47442 5.58472 5.84704 6.17265 6.52447 6.78920 7.00859 7.35867 8.72160 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.003494 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.220379 B = 8012.483648 C = 8870.510026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.007 3.993 3 C -0.082 4.082 4 C -0.082 4.082 5 C 0.537 3.463 6 O -0.533 6.533 7 O -0.497 6.497 8 C -0.081 4.081 9 C -0.041 4.041 10 C -0.660 4.660 11 S 2.711 3.289 12 O -0.983 6.983 13 O -0.972 6.972 14 N -1.024 6.024 15 C 0.148 3.852 16 C 0.197 3.803 17 O -0.577 6.577 18 C -0.626 4.626 19 H 0.069 0.931 20 C -0.004 4.004 21 N -0.922 5.922 22 Si 1.109 2.891 23 H -0.290 1.290 24 H -0.269 1.269 25 H -0.276 1.276 26 C 0.104 3.896 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.159 0.841 31 H 0.439 0.561 32 H 0.177 0.823 33 H 0.159 0.841 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.372 0.628 37 H 0.264 0.736 38 H 0.092 0.908 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.191 13.573 -8.263 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.006 3.994 3 C -0.101 4.101 4 C -0.083 4.083 5 C 0.381 3.619 6 O -0.425 6.425 7 O -0.311 6.311 8 C -0.100 4.100 9 C -0.061 4.061 10 C -0.748 4.748 11 S 2.807 3.193 12 O -0.974 6.974 13 O -0.963 6.963 14 N -0.864 5.864 15 C 0.023 3.977 16 C 0.154 3.846 17 O -0.384 6.384 18 C -0.665 4.665 19 H 0.088 0.912 20 C -0.206 4.206 21 N -0.559 5.559 22 Si 0.932 3.068 23 H -0.216 1.216 24 H -0.194 1.194 25 H -0.202 1.202 26 C -0.022 4.022 27 H 0.120 0.880 28 H 0.130 0.870 29 H 0.109 0.891 30 H 0.177 0.823 31 H 0.302 0.698 32 H 0.194 0.806 33 H 0.177 0.823 34 H 0.100 0.900 35 H 0.133 0.867 36 H 0.221 0.779 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.472 12.632 -8.203 17.281 hybrid contribution 1.284 1.219 -0.930 2.000 sum 9.757 13.850 -9.133 19.247 Atomic orbital electron populations 1.21858 0.89024 1.07421 1.05536 1.19665 0.97107 0.90998 0.91637 1.21425 0.92630 0.98900 0.97150 1.19527 0.93601 0.91751 1.03444 1.20617 0.81427 0.88292 0.71530 1.90910 1.70557 1.33983 1.47008 1.84502 1.18881 1.43048 1.84656 1.21801 1.02305 0.89867 0.96022 1.21219 0.91383 1.00801 0.92652 1.31149 1.07391 1.19962 1.16337 1.01160 0.72381 0.73718 0.72022 1.93495 1.61957 1.55350 1.86601 1.93484 1.59987 1.87250 1.55566 1.60010 1.27448 1.73802 1.25096 1.23081 0.81365 0.98740 0.94466 1.20482 0.88806 0.82518 0.92811 1.86219 1.80474 1.19671 1.52074 1.22550 1.44275 1.06375 0.93302 0.91239 1.27055 0.95762 0.92452 1.05315 1.71002 1.23205 1.30122 1.31599 0.83018 0.75460 0.76352 0.72005 1.21567 1.19428 1.20179 1.23838 1.01528 0.97618 0.79253 0.87993 0.87007 0.89142 0.82318 0.69800 0.80588 0.82342 0.90002 0.86711 0.77904 0.92438 0.89039 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.24 8.58 71.24 0.61 -3.63 16 2 C 0.01 0.19 5.87 -19.90 -0.12 0.07 16 3 C -0.08 -1.85 9.24 22.54 0.21 -1.65 16 4 C -0.08 -1.72 5.87 -20.10 -0.12 -1.84 16 5 C 0.54 10.09 8.27 70.33 0.58 10.67 16 6 O -0.53 -12.85 17.13 19.92 0.34 -12.51 16 7 O -0.50 -5.61 12.68 -56.15 -0.71 -6.32 16 8 C -0.08 -1.59 9.62 22.54 0.22 -1.38 16 9 C -0.04 -1.00 9.53 22.23 0.21 -0.79 16 10 C -0.66 -18.70 5.91 22.33 0.13 -18.57 16 11 S 2.71 94.38 5.53 -56.49 -0.31 94.07 16 12 O -0.98 -38.64 16.92 -128.00 -2.17 -40.81 16 13 O -0.97 -36.71 15.33 -128.00 -1.96 -38.68 16 14 N -1.02 -37.56 3.99 -533.17 -2.13 -39.69 16 15 C 0.15 5.40 6.97 86.48 0.60 6.01 16 16 C 0.20 8.80 1.08 -10.88 -0.01 8.78 16 17 O -0.58 -27.96 13.45 -148.98 -2.00 -29.96 16 18 C -0.63 -29.99 8.56 25.60 0.22 -29.77 16 19 H 0.07 3.19 7.85 -2.91 -0.02 3.17 16 20 C 0.00 -0.22 5.26 84.65 0.45 0.23 16 21 N -0.92 -48.26 12.80 21.45 0.27 -47.98 16 22 Si 1.11 44.18 29.93 68.60 2.05 46.23 16 23 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 25 H -0.28 -10.56 7.11 99.48 0.71 -9.85 16 26 C 0.10 4.23 7.40 86.48 0.64 4.88 16 27 H 0.10 2.17 6.20 -2.39 -0.01 2.16 16 28 H 0.11 1.97 8.08 -2.39 -0.02 1.95 16 29 H 0.09 2.49 4.75 -2.39 -0.01 2.48 16 30 H 0.16 3.11 7.65 -2.91 -0.02 3.09 16 31 H 0.44 0.81 9.11 -74.06 -0.67 0.13 16 32 H 0.18 2.34 7.61 -2.91 -0.02 2.31 16 33 H 0.16 3.56 7.32 -2.91 -0.02 3.54 16 34 H 0.08 2.92 8.14 -2.39 -0.02 2.91 16 35 H 0.12 3.53 6.70 -2.39 -0.02 3.51 16 36 H 0.37 18.10 6.95 -74.06 -0.52 17.58 16 37 H 0.26 13.67 5.52 -92.70 -0.51 13.16 16 38 H 0.09 3.55 8.09 -2.39 -0.02 3.54 16 39 H 0.06 2.54 7.80 -2.38 -0.02 2.52 16 Total: -1.00 -68.05 343.06 -2.78 -70.83 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.21 Total: 31.81 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 3.62 Total: -26.99 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -1.85 Total: -87.67 kcal Atomic # 8 Polarization: -121.77 SS G_CDS: -6.50 Total: -128.28 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.05 Total: 46.23 kcal Atomic # 16 Polarization: 94.38 SS G_CDS: -0.31 Total: 94.07 kcal Total: -68.05 -2.78 -70.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600123394.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.094 kcal (2) G-P(sol) polarization free energy of solvation -68.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds