Wall clock time and date at job start Tue Mar 31 2020 23:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86807 * 120.00113 * 2 1 4 4 H 1.48499 * 109.47081 * 269.99748 * 3 2 1 5 5 H 1.48497 * 109.47106 * 29.99643 * 3 2 1 6 6 H 1.48503 * 109.47126 * 150.00018 * 3 2 1 7 7 C 1.39949 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00155 * 169.34982 * 7 2 1 9 9 C 1.41395 * 119.99804 * 349.07147 * 7 2 1 10 10 C 1.40738 * 120.24569 * 328.14995 * 9 7 2 11 11 C 1.37589 * 119.74485 * 179.97438 * 10 9 7 12 12 C 1.38659 * 120.25310 * 0.02562 * 11 10 9 13 13 C 1.38619 * 120.49836 * 359.97438 * 12 11 10 14 14 C 1.37640 * 120.24858 * 359.73957 * 13 12 11 15 15 S 1.76191 * 120.13000 * 180.25802 * 14 13 12 16 16 O 1.42095 * 106.40433 * 229.25630 * 15 14 13 17 17 O 1.42101 * 106.40403 * 2.17966 * 15 14 13 18 18 N 1.65605 * 107.21913 * 115.71752 * 15 14 13 19 19 C 1.47147 * 120.98191 * 97.63130 * 18 15 14 20 20 C 1.53293 * 108.38565 * 129.44405 * 19 18 15 21 21 O 1.42955 * 109.22589 * 52.29963 * 20 19 18 22 22 C 1.42959 * 114.16605 * 297.42251 * 21 20 19 23 23 H 1.08997 * 109.51584 * 302.65326 * 22 21 20 24 24 C 1.50705 * 109.51325 * 182.55329 * 22 21 20 25 25 O 1.20820 * 120.00099 * 354.99725 * 24 22 21 26 26 O 1.34235 * 119.99915 * 174.99918 * 24 22 21 27 27 C 1.47149 * 120.97983 * 277.35056 * 18 15 14 28 28 H 0.97002 * 119.99431 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.12552 * 359.95242 * 10 9 7 30 30 H 1.07999 * 119.87610 * 179.97438 * 11 10 9 31 31 H 1.07997 * 119.75343 * 179.97438 * 12 11 10 32 32 H 1.08001 * 119.87676 * 179.97438 * 13 12 11 33 33 H 1.09004 * 109.68068 * 249.16573 * 19 18 15 34 34 H 1.09005 * 109.68467 * 9.71860 * 19 18 15 35 35 H 1.09003 * 109.51544 * 172.22725 * 20 19 18 36 36 H 1.09006 * 109.51317 * 292.32204 * 20 19 18 37 37 H 0.96701 * 116.99617 * 179.97438 * 26 24 22 38 38 H 1.09002 * 109.68298 * 350.27858 * 27 18 15 39 39 H 1.08997 * 109.68628 * 110.83481 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4398 2.6527 0.6999 6 1 3.5399 1.4402 0.7000 7 6 2.0080 -1.2120 0.0005 8 1 3.0741 -1.2201 -0.1723 9 6 1.3203 -2.4253 0.2332 10 6 0.1945 -2.4514 1.0775 11 6 -0.4673 -3.6377 1.2963 12 6 -0.0287 -4.8046 0.6891 13 6 1.0789 -4.7906 -0.1443 14 6 1.7528 -3.6143 -0.3822 15 16 3.1562 -3.5990 -1.4474 16 8 4.1834 -2.9100 -0.7480 17 8 3.3035 -4.9251 -1.9363 18 7 2.7691 -2.6590 -2.7547 19 6 3.1840 -1.2489 -2.8233 20 6 3.8685 -1.0115 -4.1742 21 8 3.0136 -1.4733 -5.2227 22 6 2.7426 -2.8764 -5.1817 23 1 3.6811 -3.4296 -5.2169 24 6 1.8883 -3.2588 -6.3628 25 8 1.4708 -2.4046 -7.1083 26 8 1.5911 -4.5486 -6.5865 27 6 2.0052 -3.2109 -3.8849 28 1 -0.4849 0.8401 -0.0004 29 1 -0.1483 -1.5439 1.5520 30 1 -1.3311 -3.6602 1.9441 31 1 -0.5540 -5.7313 0.8668 32 1 1.4120 -5.7055 -0.6117 33 1 2.3094 -0.6042 -2.7365 34 1 3.8823 -1.0319 -2.0148 35 1 4.0599 0.0539 -4.3031 36 1 4.8116 -1.5571 -4.2054 37 1 1.0397 -4.7448 -7.3563 38 1 1.9232 -4.2927 -3.7791 39 1 1.0099 -2.7672 -3.9069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601078580.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:22 Heat of formation + Delta-G solvation = -200.613520 kcal Electronic energy + Delta-G solvation = -29156.360917 eV Core-core repulsion = 24962.234329 eV Total energy + Delta-G solvation = -4194.126588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.62108 -39.94315 -39.38216 -38.20826 -37.19127 -36.75986 -35.94296 -35.55299 -32.94453 -32.02025 -31.37501 -28.70500 -27.34695 -26.07704 -23.68711 -23.39233 -22.95321 -22.03121 -19.95097 -19.43695 -19.25212 -18.95915 -18.03103 -17.68627 -17.41854 -17.22973 -17.10720 -16.58648 -16.06697 -15.91443 -15.60704 -15.32655 -15.15644 -14.99811 -14.87966 -14.44233 -13.88712 -13.79133 -13.56250 -13.20636 -13.12768 -13.02756 -12.95832 -12.90296 -12.76951 -12.59048 -12.53179 -12.37610 -12.17678 -11.93201 -11.64656 -11.44582 -11.36073 -11.15620 -10.98727 -9.94633 -9.76930 -9.40782 -8.78130 -6.62389 -0.31889 0.52239 0.97209 1.02197 1.39804 1.47397 1.52698 1.54201 2.06988 2.16557 2.63091 2.92114 2.98652 3.43066 3.44752 3.67757 3.74251 3.93184 4.11389 4.17575 4.25111 4.31499 4.41743 4.48698 4.60910 4.63026 4.70655 4.93375 5.04327 5.04821 5.16886 5.26914 5.49284 5.51693 5.54327 5.71154 5.85027 5.89713 5.99114 6.12723 6.50816 6.71179 6.83219 6.92471 8.18701 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010566 B = 0.005891 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.433819 B = 4751.675767 C = 5928.367627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.052 3.948 3 Si 0.954 3.046 4 H -0.240 1.240 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.496 4.496 8 H 0.109 0.891 9 C 0.168 3.832 10 C -0.184 4.184 11 C -0.077 4.077 12 C -0.248 4.248 13 C -0.018 4.018 14 C -0.796 4.796 15 S 2.723 3.277 16 O -0.989 6.989 17 O -0.996 6.996 18 N -0.990 5.990 19 C 0.081 3.919 20 C 0.053 3.947 21 O -0.371 6.371 22 C 0.089 3.911 23 H 0.126 0.874 24 C 0.502 3.498 25 O -0.528 6.528 26 O -0.497 6.497 27 C 0.102 3.898 28 H 0.294 0.706 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.080 0.920 37 H 0.436 0.564 38 H 0.118 0.882 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.180 -2.087 -8.635 9.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.167 4.167 3 Si 0.773 3.227 4 H -0.163 1.163 5 H -0.193 1.193 6 H -0.179 1.179 7 C -0.524 4.524 8 H 0.127 0.873 9 C 0.163 3.837 10 C -0.204 4.204 11 C -0.096 4.096 12 C -0.268 4.268 13 C -0.037 4.037 14 C -0.890 4.890 15 S 2.822 3.178 16 O -0.979 6.979 17 O -0.987 6.987 18 N -0.827 5.827 19 C -0.044 4.044 20 C -0.025 4.025 21 O -0.290 6.290 22 C 0.028 3.972 23 H 0.143 0.857 24 C 0.343 3.657 25 O -0.417 6.417 26 O -0.312 6.312 27 C -0.024 4.024 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.156 0.844 36 H 0.098 0.902 37 H 0.300 0.700 38 H 0.136 0.864 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.830 -1.924 -8.541 9.556 hybrid contribution -1.231 0.670 0.366 1.449 sum 2.599 -1.254 -8.175 8.670 Atomic orbital electron populations 1.69819 1.08931 1.31260 1.32868 1.26640 0.95319 1.04039 0.90666 0.85597 0.79653 0.76240 0.81209 1.16301 1.19268 1.17904 1.20500 0.97680 0.91026 1.43177 0.87327 1.17342 0.90089 0.90702 0.85536 1.21518 0.99858 0.97140 1.01847 1.21254 0.97882 0.93084 0.97372 1.20913 1.01189 0.98283 1.06439 1.20609 0.93241 0.95439 0.94445 1.30245 1.29511 1.01586 1.27620 1.00416 0.73773 0.71361 0.72282 1.93436 1.56659 1.74788 1.73052 1.93430 1.87038 1.37383 1.80808 1.57513 1.70257 1.22425 1.32473 1.22378 1.01161 0.80880 0.99970 1.23341 0.92187 1.02743 0.84186 1.87967 1.69980 1.20459 1.50608 1.21647 0.99376 0.85785 0.90363 0.85666 1.22540 0.77772 0.80706 0.84702 1.90731 1.50920 1.52019 1.48000 1.84464 1.67681 1.25998 1.53067 1.21799 0.95126 1.01275 0.84217 0.89525 0.87364 0.86139 0.85430 0.85664 0.91079 0.87540 0.84413 0.90181 0.70018 0.86385 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.53 11.07 21.83 0.24 -37.29 16 2 C 0.05 2.34 5.23 85.26 0.45 2.78 16 3 Si 0.95 33.73 29.57 68.60 2.03 35.76 16 4 H -0.24 -7.66 7.11 99.48 0.71 -6.96 16 5 H -0.27 -9.22 7.11 99.48 0.71 -8.52 16 6 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 7 C -0.50 -23.74 6.63 23.46 0.16 -23.58 16 8 H 0.11 5.15 4.28 -2.91 -0.01 5.14 16 9 C 0.17 8.36 5.51 -21.29 -0.12 8.24 16 10 C -0.18 -8.99 8.64 22.73 0.20 -8.79 16 11 C -0.08 -3.33 10.02 22.22 0.22 -3.11 16 12 C -0.25 -10.19 10.05 22.46 0.23 -9.97 16 13 C -0.02 -0.76 9.53 22.22 0.21 -0.55 16 14 C -0.80 -36.83 5.96 22.73 0.14 -36.69 16 15 S 2.72 112.19 5.11 -56.49 -0.29 111.90 16 16 O -0.99 -44.55 14.32 -128.00 -1.83 -46.38 16 17 O -1.00 -41.21 15.81 -128.00 -2.02 -43.23 16 18 N -0.99 -34.60 3.29 -512.37 -1.69 -36.29 16 19 C 0.08 2.62 5.09 86.35 0.44 3.06 16 20 C 0.05 1.31 6.98 72.08 0.50 1.82 16 21 O -0.37 -10.78 9.92 -129.98 -1.29 -12.07 16 22 C 0.09 2.36 3.28 29.81 0.10 2.46 16 23 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 24 C 0.50 12.70 7.66 71.24 0.55 13.25 16 25 O -0.53 -16.86 17.27 28.39 0.49 -16.37 16 26 O -0.50 -8.81 13.42 -51.47 -0.69 -9.50 16 27 C 0.10 3.10 5.94 86.22 0.51 3.62 16 28 H 0.29 12.42 8.30 -92.71 -0.77 11.65 16 29 H 0.11 5.43 6.48 -2.91 -0.02 5.41 16 30 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 31 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 32 H 0.13 4.86 7.33 -2.91 -0.02 4.84 16 33 H 0.07 2.49 8.02 -2.38 -0.02 2.47 16 34 H 0.11 3.52 5.78 -2.38 -0.01 3.50 16 35 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.44 3.47 9.10 -74.06 -0.67 2.80 16 38 H 0.12 3.36 7.13 -2.39 -0.02 3.34 16 39 H 0.07 2.32 8.13 -2.39 -0.02 2.30 16 Total: -1.00 -66.62 336.71 -1.03 -67.64 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.45 Total: 33.30 kcal Atomic # 6 Polarization: -51.05 SS G_CDS: 3.57 Total: -47.48 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -1.45 Total: -73.57 kcal Atomic # 8 Polarization: -122.21 SS G_CDS: -5.35 Total: -127.55 kcal Atomic # 14 Polarization: 33.73 SS G_CDS: 2.03 Total: 35.76 kcal Atomic # 16 Polarization: 112.19 SS G_CDS: -0.29 Total: 111.90 kcal Total: -66.62 -1.03 -67.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078580.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.971 kcal (2) G-P(sol) polarization free energy of solvation -66.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds