Wall clock time and date at job start Wed Apr 1 2020 00:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46705 * 2 1 4 4 C 1.50697 * 109.46854 * 240.00720 * 2 1 3 5 5 H 1.08004 * 119.99831 * 239.99179 * 4 2 1 6 6 C 1.37873 * 120.00373 * 59.99646 * 4 2 1 7 7 N 1.31514 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 120.00066 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47071 * 89.99765 * 8 6 4 10 10 H 1.48499 * 109.47085 * 209.99783 * 8 6 4 11 11 H 1.48502 * 109.47137 * 329.99844 * 8 6 4 12 12 C 1.50700 * 109.47515 * 120.00298 * 2 1 3 13 13 O 1.21285 * 119.99613 * 120.00163 * 12 2 1 14 14 N 1.34777 * 119.99925 * 299.99966 * 12 2 1 15 15 C 1.39955 * 119.99774 * 184.61873 * 14 12 2 16 16 C 1.38618 * 119.99914 * 324.64754 * 15 14 12 17 17 C 1.39508 * 119.77217 * 179.74847 * 16 15 14 18 18 C 1.47748 * 120.11643 * 180.28087 * 17 16 15 19 19 O 1.21463 * 119.99813 * 180.22937 * 18 17 16 20 20 O 1.34712 * 119.99841 * 0.22714 * 18 17 16 21 21 C 1.39670 * 119.76800 * 0.50507 * 17 16 15 22 22 C 1.37960 * 119.99072 * 359.77329 * 21 17 16 23 23 S 1.76197 * 119.88748 * 179.97438 * 22 21 17 24 24 C 1.81402 * 104.44757 * 269.97497 * 23 22 21 25 25 O 1.42103 * 104.27645 * 26.04550 * 23 22 21 26 26 O 1.42103 * 104.27925 * 153.90630 * 23 22 21 27 27 C 1.38268 * 120.22829 * 359.97291 * 22 21 17 28 28 H 1.08996 * 109.47638 * 59.99580 * 1 2 3 29 29 H 1.09000 * 109.46705 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47027 * 299.99505 * 1 2 3 31 31 H 0.96994 * 119.99829 * 180.02562 * 7 6 4 32 32 H 0.96999 * 119.99924 * 4.34807 * 14 12 2 33 33 H 1.08001 * 120.11549 * 0.03201 * 16 15 14 34 34 H 0.96701 * 116.99593 * 179.97438 * 20 18 17 35 35 H 1.07999 * 120.00170 * 179.79043 * 21 17 16 36 36 H 1.09002 * 109.46946 * 60.00065 * 24 23 22 37 37 H 1.09003 * 109.47326 * 179.97438 * 24 23 22 38 38 H 1.08996 * 109.47179 * 300.00025 * 24 23 22 39 39 H 1.08000 * 119.88234 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 1 2.6533 -1.5883 -1.1316 6 6 1.6991 -0.2392 -2.4827 7 7 0.9434 0.8304 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.3426 -2.1614 -4.4120 10 1 2.4863 -0.1411 -5.1124 11 1 3.6292 -1.7581 -3.7125 12 6 2.0324 -0.7105 1.2304 13 8 2.7298 -1.6965 1.1189 14 7 1.7069 -0.2501 2.4545 15 6 2.2511 -0.8506 3.5955 16 6 2.4776 -2.2180 3.6179 17 6 3.0252 -2.8109 4.7559 18 6 3.2755 -4.2667 4.7857 19 8 3.7485 -4.7813 5.7791 20 8 2.9791 -5.0233 3.7112 21 6 3.3316 -2.0242 5.8685 22 6 3.0969 -0.6651 5.8378 23 16 3.4838 0.3247 7.2432 24 6 1.9655 0.3145 8.2359 25 8 4.5166 -0.3936 7.9041 26 8 3.7197 1.6190 6.7061 27 6 2.5590 -0.0769 4.7080 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.7088 1.1616 -3.4843 32 1 1.0985 0.5000 2.5446 33 1 2.2352 -2.8216 2.7558 34 1 3.1609 -5.9707 3.7778 35 1 3.7525 -2.4798 6.7526 36 1 1.7208 -0.7104 8.5148 37 1 2.1162 0.9097 9.1365 38 1 1.1475 0.7376 7.6529 39 1 2.3780 0.9877 4.6899 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059784.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:45 Heat of formation + Delta-G solvation = -193.728976 kcal Electronic energy + Delta-G solvation = -27148.008548 eV Core-core repulsion = 22954.180496 eV Total energy + Delta-G solvation = -4193.828052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.93844 -41.12040 -39.50472 -38.14843 -37.26065 -36.98135 -35.89096 -35.84273 -32.93554 -32.75485 -30.67536 -30.19542 -27.22231 -26.13953 -25.34462 -24.24444 -22.42498 -21.32694 -20.30141 -19.38150 -18.97789 -18.36011 -18.09215 -17.50057 -17.20524 -17.13102 -16.97951 -16.79445 -16.74571 -16.44205 -16.11457 -15.45840 -15.02472 -14.62899 -14.52409 -14.19253 -13.95325 -13.86563 -13.54127 -13.51701 -13.27880 -13.12889 -12.98538 -12.92146 -12.75163 -12.72694 -12.60784 -12.40903 -12.25879 -12.05137 -12.01828 -11.78305 -11.54862 -11.06934 -10.73218 -10.58300 -10.36631 -9.46064 -8.17278 -6.27340 -0.90379 -0.68294 -0.28967 1.11848 1.40158 1.42129 1.52530 1.71795 1.78128 1.94155 2.04526 2.35341 2.44669 3.01835 3.13352 3.20664 3.57178 3.78800 3.85057 3.91676 4.02541 4.19205 4.26209 4.37870 4.42361 4.68708 4.73425 4.84254 4.91450 4.96665 5.00178 5.04948 5.07518 5.40000 5.47525 5.62604 5.74124 5.91439 6.17181 6.51416 6.80855 6.82403 7.24289 7.42244 8.88279 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.013611 B = 0.003142 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.610834 B = 8910.534580 C =10393.033474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.028 3.972 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.050 0.950 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.952 3.048 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.280 1.280 12 C 0.523 3.477 13 O -0.557 6.557 14 N -0.668 5.668 15 C 0.114 3.886 16 C -0.033 4.033 17 C -0.143 4.143 18 C 0.536 3.464 19 O -0.533 6.533 20 O -0.506 6.506 21 C 0.015 3.985 22 C -0.647 4.647 23 S 2.511 3.489 24 C -0.619 4.619 25 O -0.972 6.972 26 O -0.966 6.966 27 C -0.013 4.013 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.058 0.942 31 H 0.265 0.735 32 H 0.429 0.571 33 H 0.140 0.860 34 H 0.435 0.565 35 H 0.166 0.834 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.968 -0.774 22.382 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.007 3.993 3 H 0.068 0.932 4 C -0.569 4.569 5 H 0.069 0.931 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.778 3.222 9 H -0.200 1.200 10 H -0.202 1.202 11 H -0.205 1.205 12 C 0.314 3.686 13 O -0.434 6.434 14 N -0.316 5.316 15 C 0.018 3.982 16 C -0.054 4.054 17 C -0.145 4.145 18 C 0.382 3.618 19 O -0.425 6.425 20 O -0.320 6.320 21 C -0.004 4.004 22 C -0.730 4.730 23 S 2.691 3.309 24 C -0.773 4.773 25 O -0.969 6.969 26 O -0.964 6.964 27 C -0.034 4.034 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.269 0.731 33 H 0.158 0.842 34 H 0.298 0.702 35 H 0.183 0.817 36 H 0.173 0.827 37 H 0.177 0.823 38 H 0.178 0.822 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.723 -0.677 22.390 22.565 hybrid contribution -0.284 -1.391 -1.681 2.200 sum -3.007 -2.068 20.709 21.028 Atomic orbital electron populations 1.21607 0.94455 0.99827 1.02243 1.18843 0.95715 0.96193 0.88594 0.93211 1.21267 1.31804 1.12872 0.90980 0.93139 1.25518 0.95164 0.95668 1.01256 1.69924 1.37044 1.23346 1.24387 0.85649 0.78612 0.78575 0.79375 1.19963 1.20174 1.20549 1.21923 0.77817 0.83778 0.85055 1.90545 1.38613 1.27361 1.86850 1.43690 1.48097 1.36640 1.03128 1.17976 0.99997 0.91588 0.88599 1.21888 0.92222 0.94417 0.96830 1.19099 1.08361 0.90454 0.96594 1.20686 0.73404 0.87800 0.79956 1.90870 1.42770 1.74651 1.34195 1.84618 1.78575 1.27770 1.41052 1.21085 0.90245 0.91626 0.97468 1.30797 1.15720 1.07098 1.19419 1.05070 0.78535 0.72817 0.74440 1.30023 1.17698 1.14576 1.15046 1.93561 1.54987 1.73694 1.74643 1.93565 1.85489 1.38776 1.78537 1.21236 0.90851 1.01169 0.90139 0.90919 0.95525 0.92301 0.92540 0.73076 0.84226 0.70247 0.81685 0.82692 0.82278 0.82171 0.80209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 8.86 71.98 0.64 -4.43 16 2 C 0.03 1.28 2.65 -12.29 -0.03 1.25 16 3 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.53 -29.19 8.37 25.60 0.21 -28.98 16 5 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 6 C 0.02 1.27 5.30 84.65 0.45 1.72 16 7 N -0.91 -48.81 11.32 21.45 0.24 -48.57 16 8 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 12 C 0.52 21.84 6.99 87.66 0.61 22.46 16 13 O -0.56 -27.15 12.91 -3.05 -0.04 -27.19 16 14 N -0.67 -20.10 5.26 -303.61 -1.60 -21.69 16 15 C 0.11 3.20 6.29 38.11 0.24 3.44 16 16 C -0.03 -1.02 8.26 22.67 0.19 -0.83 16 17 C -0.14 -3.92 5.87 -20.11 -0.12 -4.04 16 18 C 0.54 14.65 8.27 70.34 0.58 15.23 16 19 O -0.53 -15.88 17.13 19.96 0.34 -15.54 16 20 O -0.51 -12.06 12.68 -56.22 -0.71 -12.77 16 21 C 0.02 0.35 9.01 22.55 0.20 0.55 16 22 C -0.65 -12.50 5.65 22.21 0.13 -12.38 16 23 S 2.51 36.10 5.80 -56.49 -0.33 35.77 16 24 C -0.62 -1.44 10.80 113.37 1.22 -0.22 16 25 O -0.97 -21.42 17.11 -127.65 -2.18 -23.60 16 26 O -0.97 -20.28 17.11 -127.65 -2.18 -22.46 16 27 C -0.01 -0.27 9.38 22.45 0.21 -0.06 16 28 H 0.07 3.39 6.07 -2.39 -0.01 3.37 16 29 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.83 7.47 -2.38 -0.02 1.81 16 31 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 32 H 0.43 9.61 8.12 -92.71 -0.75 8.86 16 33 H 0.14 5.11 5.79 -2.91 -0.02 5.10 16 34 H 0.44 5.65 9.11 -74.06 -0.67 4.97 16 35 H 0.17 3.41 7.14 -2.91 -0.02 3.39 16 36 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.16 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.16 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.18 2.70 7.56 -2.91 -0.02 2.68 16 Total: -1.00 -83.13 352.91 -0.18 -83.32 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -0.29 Total: 13.41 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 4.54 Total: -6.30 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -1.35 Total: -70.26 kcal Atomic # 8 Polarization: -96.79 SS G_CDS: -4.78 Total: -101.57 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 36.10 SS G_CDS: -0.33 Total: 35.77 kcal Total: -83.13 -0.18 -83.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059784.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.412 kcal (2) G-P(sol) polarization free energy of solvation -83.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds