Wall clock time and date at job start Tue Mar 31 2020 23:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00093 * 2 1 4 4 H 1.48502 * 109.47100 * 269.99779 * 3 2 1 5 5 H 1.48492 * 109.47155 * 30.00369 * 3 2 1 6 6 H 1.48503 * 109.46988 * 150.00146 * 3 2 1 7 7 C 1.38803 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99677 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00160 * 179.97438 * 7 2 1 10 10 C 1.80997 * 99.99844 * 179.97438 * 9 7 2 11 11 C 1.50709 * 109.47097 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99949 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00056 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00159 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47243 * 179.97438 * 14 13 11 16 16 H 1.08997 * 113.03707 * 53.24717 * 15 14 13 17 17 C 1.53941 * 113.76859 * 184.99713 * 15 14 13 18 18 C 1.53946 * 86.28949 * 137.90998 * 17 15 14 19 19 N 1.47580 * 86.24073 * 336.33904 * 18 17 15 20 20 C 1.34781 * 134.49338 * 204.69863 * 19 18 17 21 21 O 1.21619 * 119.99854 * 179.97438 * 20 19 18 22 22 C 1.47253 * 119.99715 * 359.97438 * 20 19 18 23 23 N 1.30553 * 125.54693 * 359.69399 * 22 20 19 24 24 C 1.30707 * 115.90841 * 179.77961 * 23 22 20 25 25 C 1.34228 * 115.77873 * 0.52129 * 24 23 22 26 26 S 1.71066 * 109.09685 * 359.72221 * 25 24 23 27 27 H 0.97006 * 120.00063 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47446 * 60.00145 * 10 9 7 29 29 H 1.09000 * 109.47568 * 299.99643 * 10 9 7 30 30 H 0.97009 * 119.99592 * 359.97438 * 13 11 10 31 31 H 1.08997 * 109.46733 * 59.99653 * 14 13 11 32 32 H 1.09000 * 109.46638 * 300.00158 * 14 13 11 33 33 H 1.09005 * 113.74495 * 23.56759 * 17 15 14 34 34 H 1.08995 * 113.74476 * 252.25727 * 17 15 14 35 35 H 1.09002 * 113.76900 * 90.69607 * 18 17 15 36 36 H 1.09000 * 113.76969 * 221.98028 * 18 17 15 37 37 H 1.08005 * 122.10404 * 180.21728 * 24 23 22 38 38 H 1.08007 * 125.44857 * 179.71955 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1373 -0.0005 9 16 3.7722 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0009 11 6 5.5730 -3.2326 -0.0021 12 8 6.3440 -2.2964 -0.0035 13 7 6.0456 -4.4948 -0.0026 14 6 7.4906 -4.7359 -0.0043 15 6 7.7562 -6.2427 -0.0040 16 1 7.2382 -6.7673 -0.8067 17 6 9.2463 -6.6100 0.1171 18 6 8.7931 -7.7083 1.0960 19 7 7.5956 -6.8761 1.3231 20 6 6.7135 -6.7462 2.3339 21 8 5.7950 -5.9544 2.2413 22 6 6.8620 -7.5629 3.5501 23 7 7.7997 -8.4462 3.7614 24 6 7.7548 -9.0625 4.9133 25 6 6.7430 -8.7131 5.7231 26 16 5.7988 -7.5123 4.9531 27 1 -0.4850 0.8401 0.0004 28 1 3.6432 -3.4318 -0.8906 29 1 3.6439 -3.4314 0.8893 30 1 5.4288 -5.2436 -0.0019 31 1 7.9345 -4.2888 0.8851 32 1 7.9324 -4.2889 -0.8948 33 1 9.8537 -5.8325 0.5805 34 1 9.6795 -6.9960 -0.8056 35 1 8.5797 -8.6636 0.6163 36 1 9.4328 -7.8063 1.9730 37 1 8.4830 -9.8093 5.1935 38 1 6.5551 -9.1244 6.7040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689509161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:29 Heat of formation + Delta-G solvation = 20.886867 kcal Electronic energy + Delta-G solvation = -24055.150022 eV Core-core repulsion = 20345.674033 eV Total energy + Delta-G solvation = -3709.475989 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96994 -39.85998 -38.83819 -37.95819 -34.31317 -32.35723 -31.62749 -30.17535 -29.64587 -27.66432 -26.57894 -25.52337 -23.43980 -23.03312 -21.25803 -20.31176 -19.41136 -18.49731 -17.80668 -17.25676 -16.62733 -16.45756 -16.10064 -15.50718 -15.46813 -14.97586 -14.91580 -14.70283 -13.99963 -13.90989 -13.80433 -13.71606 -13.18971 -12.83121 -12.78089 -12.71546 -12.39978 -11.97092 -11.85230 -11.70561 -11.41085 -11.17493 -10.93818 -10.67685 -10.48485 -10.13186 -10.09259 -9.77676 -9.39578 -9.34624 -9.08140 -8.92775 -8.75531 -8.39007 -6.80859 -6.20977 -3.91066 -0.15996 0.71388 1.30521 1.95514 2.38569 2.85795 2.91289 3.18325 3.38395 3.42382 3.54782 3.57662 3.76393 4.02031 4.36987 4.40918 4.49875 4.59140 4.65684 4.74162 4.88667 4.89256 4.95151 5.04894 5.18101 5.22095 5.36232 5.44204 5.53650 5.67129 5.73230 5.88966 5.95802 6.21080 6.70088 7.00916 7.21416 7.70744 7.83859 8.02511 8.50728 8.69056 9.25563 10.88447 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.014818 B = 0.002667 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.199700 B =10498.016747 C =11956.504082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.094 3.906 3 Si 0.857 3.143 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.518 4.518 8 H 0.088 0.912 9 S -0.144 6.144 10 C -0.120 4.120 11 C 0.535 3.465 12 O -0.528 6.528 13 N -0.722 5.722 14 C 0.122 3.878 15 C 0.128 3.872 16 H 0.106 0.894 17 C -0.146 4.146 18 C 0.114 3.886 19 N -0.623 5.623 20 C 0.614 3.386 21 O -0.507 6.507 22 C -0.017 4.017 23 N -0.425 5.425 24 C 0.025 3.975 25 C -0.284 4.284 26 S 0.264 5.736 27 H 0.270 0.730 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.402 0.598 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.177 0.823 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.269 -24.410 7.016 32.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.665 4.665 8 H 0.106 0.894 9 S 0.082 5.918 10 C -0.271 4.271 11 C 0.321 3.679 12 O -0.404 6.404 13 N -0.376 5.376 14 C -0.003 4.003 15 C 0.025 3.975 16 H 0.124 0.876 17 C -0.185 4.185 18 C -0.009 4.009 19 N -0.360 5.360 20 C 0.399 3.601 21 O -0.381 6.381 22 C -0.291 4.291 23 N -0.144 5.144 24 C -0.133 4.133 25 C -0.426 4.426 26 S 0.518 5.482 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.237 0.763 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.194 0.806 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 20.198 -21.780 6.978 30.512 hybrid contribution -0.456 -1.694 0.552 1.839 sum 19.742 -23.473 7.530 31.582 Atomic orbital electron populations 1.69944 1.05918 1.27642 1.48468 1.24714 0.94443 0.98939 0.93296 0.86726 0.81949 0.83267 0.79864 1.19261 1.20044 1.15889 1.22341 0.88406 0.97499 1.58294 0.89434 1.84706 1.09103 1.00588 1.97418 1.23241 0.94287 1.03793 1.05760 1.20171 0.90487 0.82205 0.74997 1.90673 1.58804 1.42325 1.48607 1.45768 1.06711 1.08229 1.76927 1.21411 0.83110 0.92772 1.03002 1.23333 0.95782 0.94130 0.84246 0.87598 1.23606 0.94784 0.99275 1.00789 1.23179 0.84229 0.94686 0.98784 1.49954 1.28426 1.41883 1.15741 1.16367 0.81236 0.81712 0.80786 1.90953 1.31139 1.36006 1.79971 1.27669 0.98108 1.02568 1.00772 1.66861 1.21797 1.05986 1.19707 1.21724 1.00002 1.02499 0.89043 1.26986 1.02202 1.05832 1.07532 1.84394 1.25785 1.30634 1.07338 0.92043 0.88791 0.88352 0.76332 0.91181 0.90000 0.88288 0.88806 0.89462 0.88830 0.80594 0.79851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.44 13.97 55.49 0.78 -26.66 16 2 C 0.09 2.85 5.50 -17.43 -0.10 2.76 16 3 Si 0.86 22.53 27.74 -169.99 -4.71 17.81 16 4 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.23 -6.19 6.74 56.52 0.38 -5.81 16 7 C -0.52 -15.57 10.04 30.94 0.31 -15.26 16 8 H 0.09 2.75 8.03 -52.49 -0.42 2.33 16 9 S -0.14 -3.88 18.55 -107.50 -1.99 -5.87 16 10 C -0.12 -2.58 6.16 36.01 0.22 -2.36 16 11 C 0.54 10.59 7.85 -10.98 -0.09 10.50 16 12 O -0.53 -12.23 15.86 5.56 0.09 -12.14 16 13 N -0.72 -10.77 4.28 -60.29 -0.26 -11.03 16 14 C 0.12 1.44 5.33 -4.04 -0.02 1.42 16 15 C 0.13 1.02 4.29 -66.67 -0.29 0.73 16 16 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 17 C -0.15 -0.73 7.86 -25.80 -0.20 -0.93 16 18 C 0.11 0.68 7.85 -2.97 -0.02 0.66 16 19 N -0.62 -5.92 3.50 -171.42 -0.60 -6.52 16 20 C 0.61 7.58 7.94 -12.59 -0.10 7.48 16 21 O -0.51 -7.85 15.10 5.26 0.08 -7.77 16 22 C -0.02 -0.18 7.42 -14.43 -0.11 -0.29 16 23 N -0.43 -3.92 8.91 -11.51 -0.10 -4.02 16 24 C 0.02 0.17 11.24 -19.44 -0.22 -0.05 16 25 C -0.28 -1.81 11.09 29.32 0.33 -1.48 16 26 S 0.26 2.36 23.03 -107.50 -2.48 -0.11 16 27 H 0.27 7.77 8.31 -40.82 -0.34 7.44 16 28 H 0.09 1.86 8.14 -51.92 -0.42 1.44 16 29 H 0.10 2.08 8.14 -51.92 -0.42 1.66 16 30 H 0.40 5.47 7.56 -40.82 -0.31 5.16 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.59 7.47 -51.93 -0.39 0.20 16 37 H 0.18 0.73 8.06 -52.48 -0.42 0.30 16 38 H 0.18 0.63 8.06 -52.48 -0.42 0.20 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -38.07 357.04 -8.61 -46.67 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.50 Total: 1.08 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -0.28 Total: 3.18 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.19 Total: -48.23 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.17 Total: -19.91 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.81 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -4.47 Total: -5.99 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -38.07 -8.61 -46.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689509161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.561 kcal (2) G-P(sol) polarization free energy of solvation -38.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds