Wall clock time and date at job start Tue Mar 31 2020 23:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00430 * 2 1 4 4 H 1.48501 * 109.47289 * 240.00168 * 3 2 1 5 5 H 1.48508 * 109.46881 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47382 * 119.99501 * 3 2 1 7 7 C 1.38801 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00234 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99839 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99782 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46835 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00031 * 0.02562 * 11 10 9 13 13 N 1.34769 * 119.99683 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00088 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47268 * 179.97438 * 14 13 11 16 16 C 1.31002 * 120.00248 * 127.00837 * 15 14 13 17 17 C 1.50699 * 119.99445 * 7.55720 * 16 15 14 18 18 N 1.46501 * 109.47078 * 127.15936 * 17 16 15 19 19 C 1.34773 * 119.99885 * 179.97438 * 18 17 16 20 20 O 1.21680 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.46690 * 119.99852 * 179.97438 * 19 18 17 22 22 C 1.35662 * 126.13115 * 179.71876 * 21 19 18 23 23 N 1.30943 * 114.19092 * 179.79045 * 22 21 19 24 24 C 1.29425 * 117.36285 * 0.52096 * 23 22 21 25 25 S 1.70960 * 110.39230 * 359.70960 * 24 23 22 26 26 H 0.97005 * 119.99691 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46661 * 60.00208 * 10 9 7 28 28 H 1.09001 * 109.47382 * 299.99811 * 10 9 7 29 29 H 0.97003 * 120.00316 * 359.97438 * 13 11 10 30 30 H 1.09005 * 109.46787 * 59.99950 * 14 13 11 31 31 H 1.08999 * 109.47236 * 300.00093 * 14 13 11 32 32 H 1.08005 * 120.00183 * 307.00367 * 15 14 13 33 33 H 1.07993 * 120.00245 * 187.83335 * 16 15 14 34 34 H 1.09000 * 109.46958 * 247.15872 * 17 16 15 35 35 H 1.08999 * 109.47495 * 7.15708 * 17 16 15 36 36 H 0.97001 * 119.99768 * 0.02562 * 18 17 16 37 37 H 1.08003 * 122.90174 * 359.96364 * 22 21 19 38 38 H 1.08002 * 124.80596 * 179.69128 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7909 -5.5023 -0.0010 13 7 2.8438 -6.3431 0.0003 14 6 2.3301 -7.7151 -0.0009 15 6 3.4845 -8.6838 -0.0007 16 6 3.5467 -9.6286 0.9046 17 6 2.3855 -9.8552 1.8381 18 7 1.9905 -11.2652 1.7926 19 6 0.9665 -11.7029 2.5517 20 8 0.3697 -10.9269 3.2745 21 6 0.5706 -13.1146 2.5058 22 6 -0.4324 -13.6876 3.2172 23 7 -0.5864 -14.9683 2.9918 24 6 0.2213 -15.5250 2.1475 25 16 1.3175 -14.3717 1.5225 26 1 -0.4850 0.8401 -0.0004 27 1 3.1243 -3.7314 0.8906 28 1 3.1244 -3.7315 -0.8895 29 1 3.8007 -6.1836 0.0006 30 1 1.7224 -7.8747 -0.8916 31 1 1.7205 -7.8757 0.8884 32 1 4.2605 -8.5993 -0.7472 33 1 4.4319 -10.2420 0.9850 34 1 2.6797 -9.5929 2.8543 35 1 1.5454 -9.2324 1.5308 36 1 2.4664 -11.8839 1.2168 37 1 -1.0523 -13.1347 3.9075 38 1 0.2052 -16.5704 1.8764 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759642662.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:20 Heat of formation + Delta-G solvation = -0.064267 kcal Electronic energy + Delta-G solvation = -22436.401498 eV Core-core repulsion = 18726.017000 eV Total energy + Delta-G solvation = -3710.384498 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65144 -39.61172 -39.18924 -36.94524 -34.81511 -33.02005 -32.42083 -31.25004 -29.59538 -27.59294 -26.22135 -25.53238 -25.06614 -22.29919 -20.71666 -20.46291 -19.84596 -18.95004 -17.82573 -17.34190 -16.85256 -16.39006 -16.20377 -15.81763 -15.47734 -15.09915 -14.86667 -14.79402 -14.55744 -14.46253 -14.12241 -13.90561 -13.79454 -13.21064 -13.07972 -12.68626 -12.51096 -12.18538 -11.84803 -11.27313 -11.04011 -11.03231 -10.78381 -10.76555 -10.35694 -10.16112 -9.99007 -9.82059 -9.69026 -9.52116 -9.35441 -9.05519 -8.83950 -8.23366 -6.49443 -6.20674 -3.91541 -0.32936 0.58251 0.95995 1.38432 1.94162 2.70965 2.72343 3.07781 3.09255 3.24106 3.28616 3.33715 3.70087 3.77790 4.17931 4.21192 4.34096 4.48650 4.56912 4.75429 4.80675 5.11774 5.14308 5.16182 5.36981 5.46386 5.50528 5.51294 5.72208 5.82633 5.88599 6.02716 6.13262 6.21375 6.56620 6.85350 7.02024 7.59788 7.62761 7.67076 8.35635 8.58612 9.24332 10.86676 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.029625 B = 0.001537 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.931628 B =18213.651422 C =18795.065414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.515 6.515 13 N -0.735 5.735 14 C 0.132 3.868 15 C -0.137 4.137 16 C -0.167 4.167 17 C 0.134 3.866 18 N -0.719 5.719 19 C 0.594 3.406 20 O -0.515 6.515 21 C -0.288 4.288 22 C 0.119 3.881 23 N -0.475 5.475 24 C 0.037 3.963 25 S 0.163 5.837 26 H 0.269 0.731 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.399 0.601 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.399 0.601 37 H 0.191 0.809 38 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.206 -32.908 1.048 34.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.389 6.389 13 N -0.390 5.390 14 C 0.009 3.991 15 C -0.156 4.156 16 C -0.186 4.186 17 C 0.012 3.988 18 N -0.371 5.371 19 C 0.379 3.621 20 O -0.392 6.392 21 C -0.412 4.412 22 C -0.039 4.039 23 N -0.188 5.188 24 C -0.258 4.258 25 S 0.416 5.584 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.233 0.767 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.233 0.767 37 H 0.208 0.792 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 8.004 -32.979 1.087 33.954 hybrid contribution 2.274 1.314 0.203 2.634 sum 10.277 -31.665 1.289 33.316 Atomic orbital electron populations 1.70010 1.05956 1.27576 1.46699 1.24991 0.95025 0.99016 0.94517 0.86222 0.79232 0.81245 0.78777 1.19958 1.20804 1.19939 1.22830 0.94879 0.91679 1.59150 0.90963 1.85427 1.04843 0.96289 1.96726 1.23530 1.06627 0.95229 1.04969 1.20349 0.86516 0.86272 0.75138 1.90717 1.15359 1.85530 1.47319 1.45933 1.10053 1.04869 1.78166 1.20504 0.94645 0.80598 1.03350 1.23057 0.99185 0.96145 0.97237 1.22822 0.98469 1.00977 0.96348 1.20659 0.96712 0.81241 1.00235 1.45810 1.34496 1.11340 1.45481 1.16694 0.80139 0.84988 0.80285 1.90912 1.53357 1.55191 1.39747 1.25813 1.06913 0.99241 1.09271 1.22342 0.95123 0.88654 0.97749 1.66283 1.25513 1.10493 1.16486 1.28885 0.94696 1.05284 0.96975 1.83931 1.33826 1.00164 1.40461 0.92114 0.89147 0.89178 0.76690 0.90570 0.90170 0.85669 0.85836 0.89953 0.89111 0.76688 0.79198 0.77624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 11 C 0.53 9.84 7.85 -10.99 -0.09 9.75 16 12 O -0.52 -11.79 15.86 5.56 0.09 -11.70 16 13 N -0.74 -9.39 5.55 -61.47 -0.34 -9.73 16 14 C 0.13 1.45 5.76 -5.19 -0.03 1.42 16 15 C -0.14 -0.94 9.63 -36.03 -0.35 -1.28 16 16 C -0.17 -0.99 9.63 -36.03 -0.35 -1.34 16 17 C 0.13 1.10 5.76 -5.19 -0.03 1.07 16 18 N -0.72 -5.38 5.54 -62.80 -0.35 -5.72 16 19 C 0.59 6.01 7.79 -12.85 -0.10 5.91 16 20 O -0.52 -7.32 16.87 5.21 0.09 -7.23 16 21 C -0.29 -2.31 6.48 -37.09 -0.24 -2.55 16 22 C 0.12 1.01 11.09 -18.85 -0.21 0.80 16 23 N -0.47 -3.80 10.51 -15.38 -0.16 -3.96 16 24 C 0.04 0.17 12.22 51.75 0.63 0.81 16 25 S 0.16 0.69 22.35 -107.50 -2.40 -1.71 16 26 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 28 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 29 H 0.40 3.82 8.46 -40.82 -0.35 3.48 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.98 5.30 -51.93 -0.28 0.71 16 32 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 33 H 0.12 0.47 8.06 -52.49 -0.42 0.05 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.94 5.30 -51.93 -0.28 0.66 16 36 H 0.40 1.89 7.65 -40.82 -0.31 1.58 16 37 H 0.19 1.55 8.06 -52.48 -0.42 1.13 16 38 H 0.21 0.21 8.06 -52.49 -0.42 -0.21 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -38.34 366.32 -8.53 -46.87 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -4.13 Total: 1.91 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -0.34 Total: -1.28 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.12 Total: -44.95 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.18 Total: -18.93 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -4.61 Total: -5.54 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.34 -8.53 -46.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759642662.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.807 kcal (2) G-P(sol) polarization free energy of solvation -38.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds