Wall clock time and date at job start Tue Mar 31 2020 23:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00430 * 2 1 4 4 H 1.48501 * 109.47289 * 240.00168 * 3 2 1 5 5 H 1.48508 * 109.46881 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47382 * 119.99501 * 3 2 1 7 7 C 1.38801 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00234 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99839 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99782 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46835 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00031 * 0.02562 * 11 10 9 13 13 N 1.34769 * 119.99683 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00088 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47268 * 179.97438 * 14 13 11 16 16 C 1.31002 * 120.00248 * 127.00837 * 15 14 13 17 17 C 1.50699 * 119.99445 * 7.55720 * 16 15 14 18 18 N 1.46501 * 109.47078 * 127.15936 * 17 16 15 19 19 C 1.34773 * 119.99885 * 179.97438 * 18 17 16 20 20 O 1.21680 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.46690 * 119.99852 * 179.97438 * 19 18 17 22 22 C 1.35662 * 126.13115 * 179.71876 * 21 19 18 23 23 N 1.30943 * 114.19092 * 179.79045 * 22 21 19 24 24 C 1.29425 * 117.36285 * 0.52096 * 23 22 21 25 25 S 1.70960 * 110.39230 * 359.70960 * 24 23 22 26 26 H 0.97005 * 119.99691 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46661 * 60.00208 * 10 9 7 28 28 H 1.09001 * 109.47382 * 299.99811 * 10 9 7 29 29 H 0.97003 * 120.00316 * 359.97438 * 13 11 10 30 30 H 1.09005 * 109.46787 * 59.99950 * 14 13 11 31 31 H 1.08999 * 109.47236 * 300.00093 * 14 13 11 32 32 H 1.08005 * 120.00183 * 307.00367 * 15 14 13 33 33 H 1.07993 * 120.00245 * 187.83335 * 16 15 14 34 34 H 1.09000 * 109.46958 * 247.15872 * 17 16 15 35 35 H 1.08999 * 109.47495 * 7.15708 * 17 16 15 36 36 H 0.97001 * 119.99768 * 0.02562 * 18 17 16 37 37 H 1.08003 * 122.90174 * 359.96364 * 22 21 19 38 38 H 1.08002 * 124.80596 * 179.69128 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7909 -5.5023 -0.0010 13 7 2.8438 -6.3431 0.0003 14 6 2.3301 -7.7151 -0.0009 15 6 3.4845 -8.6838 -0.0007 16 6 3.5467 -9.6286 0.9046 17 6 2.3855 -9.8552 1.8381 18 7 1.9905 -11.2652 1.7926 19 6 0.9665 -11.7029 2.5517 20 8 0.3697 -10.9269 3.2745 21 6 0.5706 -13.1146 2.5058 22 6 -0.4324 -13.6876 3.2172 23 7 -0.5864 -14.9683 2.9918 24 6 0.2213 -15.5250 2.1475 25 16 1.3175 -14.3717 1.5225 26 1 -0.4850 0.8401 -0.0004 27 1 3.1243 -3.7314 0.8906 28 1 3.1244 -3.7315 -0.8895 29 1 3.8007 -6.1836 0.0006 30 1 1.7224 -7.8747 -0.8916 31 1 1.7205 -7.8757 0.8884 32 1 4.2605 -8.5993 -0.7472 33 1 4.4319 -10.2420 0.9850 34 1 2.6797 -9.5929 2.8543 35 1 1.5454 -9.2324 1.5308 36 1 2.4664 -11.8839 1.2168 37 1 -1.0523 -13.1347 3.9075 38 1 0.2052 -16.5704 1.8764 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759642662.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:20 Heat of formation + Delta-G solvation = -31.083520 kcal Electronic energy + Delta-G solvation = -22437.746593 eV Core-core repulsion = 18726.017000 eV Total energy + Delta-G solvation = -3711.729594 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30783 -40.67246 -40.16780 -37.79523 -35.82918 -34.58351 -33.99654 -31.87961 -31.00015 -28.36186 -27.68240 -26.83919 -25.92243 -22.96697 -21.84468 -21.35276 -20.47501 -19.95932 -19.33808 -18.14796 -17.84333 -17.40104 -17.11973 -16.87849 -16.80332 -16.56770 -16.12046 -15.72262 -15.53967 -15.13388 -14.99157 -14.87635 -14.76011 -14.52322 -14.38823 -14.08320 -13.53932 -13.18734 -13.16758 -12.85716 -12.67861 -12.62157 -11.98276 -11.73943 -11.58019 -11.12551 -11.09667 -10.84217 -10.74181 -10.49656 -10.34604 -10.27488 -10.10588 -9.85851 -8.67223 -8.34093 -6.12853 -0.83903 0.13708 0.50547 0.78048 1.29198 1.34575 1.44590 1.48544 1.58285 1.59685 2.02128 2.06662 2.27833 2.44616 3.00001 3.29217 3.33286 3.57567 3.72204 3.90904 4.02439 4.07983 4.10891 4.29590 4.31397 4.38456 4.51082 4.63263 4.68313 4.91603 4.95086 5.12616 5.34589 5.41773 5.45423 5.68965 6.19852 6.24105 6.50598 6.52778 6.93785 7.06836 7.23774 8.74921 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.029625 B = 0.001537 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.931628 B =18213.651422 C =18795.065414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.128 4.128 11 C 0.531 3.469 12 O -0.569 6.569 13 N -0.706 5.706 14 C 0.128 3.872 15 C -0.136 4.136 16 C -0.143 4.143 17 C 0.128 3.872 18 N -0.703 5.703 19 C 0.591 3.409 20 O -0.571 6.571 21 C -0.321 4.321 22 C 0.109 3.891 23 N -0.509 5.509 24 C 0.041 3.959 25 S 0.243 5.757 26 H 0.271 0.729 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.419 0.581 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.415 0.585 37 H 0.177 0.823 38 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.266 -34.807 -0.206 37.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.103 0.897 9 S 0.071 5.929 10 C -0.279 4.279 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.361 5.361 14 C 0.005 3.995 15 C -0.155 4.155 16 C -0.162 4.162 17 C 0.005 3.995 18 N -0.355 5.355 19 C 0.377 3.623 20 O -0.451 6.451 21 C -0.446 4.446 22 C -0.050 4.050 23 N -0.223 5.223 24 C -0.253 4.253 25 S 0.497 5.503 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.257 0.743 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.175 0.825 33 H 0.179 0.821 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.252 0.748 37 H 0.194 0.806 38 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 12.170 -34.945 -0.210 37.004 hybrid contribution 1.069 1.668 0.569 2.061 sum 13.239 -33.277 0.359 35.816 Atomic orbital electron populations 1.70188 1.08051 1.28668 1.47940 1.26155 0.95960 1.03403 0.93695 0.84984 0.77772 0.75569 0.79538 1.18507 1.20488 1.18648 1.23186 0.95403 0.91915 1.59005 0.89720 1.85644 1.10789 0.99433 1.97077 1.23367 1.03475 0.94071 1.07007 1.20143 0.86223 0.86851 0.75113 1.90705 1.17657 1.86137 1.50229 1.45647 1.10440 1.04516 1.75463 1.20607 0.96517 0.80266 1.02145 1.22958 0.98327 0.95481 0.98730 1.22938 0.98155 1.00794 0.94355 1.20626 0.97012 0.81244 1.00578 1.45659 1.33695 1.11345 1.44828 1.17051 0.79958 0.85630 0.79668 1.90874 1.55232 1.56900 1.42125 1.25693 1.08191 0.99341 1.11347 1.22298 0.95417 0.89314 0.97972 1.66320 1.27312 1.10188 1.18441 1.29606 0.93470 1.07006 0.95170 1.83563 1.31692 0.97185 1.37815 0.92019 0.87092 0.86827 0.74288 0.91667 0.91935 0.82505 0.82068 0.90792 0.91764 0.74780 0.80582 0.73858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.67 13.22 21.65 0.29 -56.38 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.70 29.55 68.60 2.03 45.72 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 7 C -0.55 -31.41 9.50 67.95 0.65 -30.76 16 8 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 9 S -0.16 -8.81 20.57 -56.49 -1.16 -9.97 16 10 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 11 C 0.53 19.66 7.85 87.66 0.69 20.35 16 12 O -0.57 -27.11 15.86 -3.02 -0.05 -27.16 16 13 N -0.71 -16.97 5.55 -466.79 -2.59 -19.56 16 14 C 0.13 2.69 5.76 85.63 0.49 3.18 16 15 C -0.14 -1.42 9.63 25.64 0.25 -1.18 16 16 C -0.14 -1.24 9.63 25.64 0.25 -0.99 16 17 C 0.13 2.05 5.76 85.63 0.49 2.54 16 18 N -0.70 -9.96 5.54 -470.82 -2.61 -12.57 16 19 C 0.59 12.44 7.79 86.45 0.67 13.12 16 20 O -0.57 -17.70 16.87 -4.29 -0.07 -17.77 16 21 C -0.32 -5.15 6.48 23.88 0.15 -5.00 16 22 C 0.11 1.97 11.09 84.23 0.93 2.90 16 23 N -0.51 -7.91 10.51 -202.56 -2.13 -10.03 16 24 C 0.04 0.29 12.22 130.60 1.60 1.89 16 25 S 0.24 1.43 22.35 -56.49 -1.26 0.17 16 26 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 27 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 28 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 29 H 0.42 6.71 8.46 -92.71 -0.78 5.93 16 30 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.06 1.60 5.30 -2.39 -0.01 1.58 16 32 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 33 H 0.16 0.34 8.06 -2.91 -0.02 0.31 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.41 5.30 -2.39 -0.01 1.40 16 36 H 0.41 2.92 7.65 -92.71 -0.71 2.21 16 37 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.25 -0.44 8.06 -2.91 -0.02 -0.47 16 Total: -1.00 -90.41 366.32 -0.85 -91.25 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -0.36 Total: 13.67 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 7.08 Total: 2.63 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -7.04 Total: -98.55 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -0.12 Total: -44.93 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -7.38 SS G_CDS: -2.42 Total: -9.81 kcal Total: -90.41 -0.85 -91.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759642662.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.170 kcal (2) G-P(sol) polarization free energy of solvation -90.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds