Wall clock time and date at job start Tue Mar 31 2020 23:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27938 * 1 3 3 Si 1.86803 * 119.99587 * 2 1 4 4 H 1.48498 * 109.47123 * 269.99915 * 3 2 1 5 5 H 1.48495 * 109.47178 * 30.00307 * 3 2 1 6 6 H 1.48508 * 109.46871 * 149.99991 * 3 2 1 7 7 C 1.50696 * 120.00341 * 179.97438 * 2 1 3 8 8 C 1.53304 * 109.74503 * 23.81089 * 7 2 1 9 9 N 1.46823 * 109.39869 * 186.49706 * 8 7 2 10 10 C 1.46900 * 110.99922 * 189.74882 * 9 8 7 11 11 C 1.50696 * 109.47072 * 301.36491 * 10 9 8 12 12 C 1.38420 * 119.87361 * 260.24949 * 11 10 9 13 13 C 1.37907 * 120.18254 * 180.29829 * 12 11 10 14 14 C 1.39450 * 119.94159 * 359.72788 * 13 12 11 15 Xx 1.57001 * 120.12142 * 180.02562 * 14 13 12 16 15 O 1.42000 * 120.00122 * 179.97438 * 15 14 13 17 16 O 1.41996 * 120.00348 * 359.97438 * 15 14 13 18 17 C 1.39471 * 119.75856 * 359.97438 * 14 13 12 19 18 Cl 1.73599 * 120.09764 * 180.02562 * 18 14 13 20 19 C 1.38404 * 119.81324 * 0.02562 * 18 14 13 21 20 F 1.35104 * 119.97384 * 180.02562 * 20 18 14 22 21 C 1.46826 * 111.56882 * 65.38584 * 9 8 7 23 22 C 1.53298 * 109.39647 * 294.61536 * 22 9 8 24 23 C 1.51426 * 108.24777 * 53.79004 * 23 22 9 25 24 O 1.20761 * 121.11423 * 130.99110 * 24 23 22 26 25 H 0.96997 * 120.00938 * 359.97438 * 1 2 3 27 26 H 1.09011 * 109.70518 * 144.41294 * 7 2 1 28 27 H 1.08995 * 109.48041 * 66.51686 * 8 7 2 29 28 H 1.08997 * 109.48025 * 306.47528 * 8 7 2 30 29 H 1.08999 * 109.47299 * 181.35976 * 10 9 8 31 30 H 1.09010 * 109.46794 * 61.36390 * 10 9 8 32 31 H 1.07992 * 119.90806 * 0.02562 * 12 11 10 33 32 H 1.08005 * 120.02712 * 179.70033 * 13 12 11 34 33 H 0.96699 * 114.00454 * 180.02562 * 16 15 14 35 34 H 0.96696 * 114.00619 * 179.97438 * 17 15 14 36 35 H 1.09009 * 109.48020 * 54.58810 * 22 9 8 37 36 H 1.08998 * 109.48969 * 174.63171 * 22 9 8 38 37 H 1.09005 * 109.70877 * 173.47754 * 23 22 9 39 38 H 1.09003 * 109.70674 * 294.09811 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2133 1.6178 0.0000 4 1 2.4608 2.0465 -1.4001 5 1 1.4107 2.6527 0.7001 6 1 3.5109 1.4403 0.7001 7 6 2.0329 -1.3050 0.0006 8 6 1.1487 -2.4139 -0.5814 9 7 1.8286 -3.7070 -0.4351 10 6 1.1255 -4.7588 -1.1817 11 6 -0.2918 -4.8679 -0.6816 12 6 -0.6316 -5.8660 0.2153 13 6 -1.9281 -5.9755 0.6724 14 6 -2.8988 -5.0751 0.2346 15 8 -5.3623 -4.2769 0.3057 16 8 -4.7258 -6.2229 1.6683 17 6 -2.5524 -4.0666 -0.6643 18 17 -3.7536 -2.9405 -1.2145 19 6 -1.2482 -3.9660 -1.1165 20 9 -0.9090 -2.9900 -1.9869 21 6 1.9841 -4.0783 0.9769 22 6 2.9249 -3.0824 1.6646 23 6 2.3960 -1.6846 1.4209 24 8 2.2682 -0.8987 2.3288 25 1 -0.4851 0.8399 0.0004 26 1 2.9395 -1.2062 -0.5967 27 1 0.9663 -2.2165 -1.6377 28 1 0.1992 -2.4398 -0.0469 29 1 1.6364 -5.7107 -1.0366 30 1 1.1183 -4.5084 -2.2426 31 1 0.1197 -6.5636 0.5547 32 1 -2.1915 -6.7582 1.3685 33 1 -6.2409 -4.4304 0.6793 34 1 -5.6566 -6.2165 1.9300 35 1 1.0109 -4.0574 1.4675 36 1 2.4042 -5.0818 1.0448 37 1 2.9535 -3.2831 2.7356 38 1 3.9272 -3.1744 1.2460 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250350991.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:06 Heat of formation + Delta-G solvation = 114.803155 kcal Electronic energy + Delta-G solvation = -27087.375278 eV Core-core repulsion = 22882.336834 eV Total energy + Delta-G solvation = -4205.038444 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.082 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -50.69597 -41.75064 -40.79644 -38.79539 -37.85882 -36.89746 -34.09295 -33.14066 -32.59423 -32.46540 -32.12795 -31.26736 -27.25231 -25.96275 -24.46970 -24.08862 -22.78749 -21.68421 -19.99540 -18.83354 -18.50027 -17.98733 -17.96702 -17.59893 -17.05205 -16.78714 -16.42679 -16.11990 -15.97639 -15.78855 -15.61362 -15.42259 -15.04318 -14.90125 -14.63741 -14.47816 -14.19223 -14.09560 -13.77793 -13.36053 -13.19454 -12.99768 -12.87199 -12.81446 -12.64373 -12.47309 -12.20502 -12.16045 -11.70479 -11.35979 -11.15386 -10.72246 -10.57788 -10.43662 -10.04599 -9.89723 -9.72690 -6.23790 -3.24766 -0.98577 -0.88176 0.53125 0.68434 0.81342 0.99604 1.35864 1.46034 1.62304 1.82991 2.22280 2.42839 2.69465 2.84699 2.88774 3.08205 3.16197 3.33217 3.54205 3.63647 3.70472 3.74682 3.95644 4.01712 4.03886 4.11897 4.26540 4.31329 4.37741 4.40749 4.49516 4.52492 4.65810 4.71278 4.79989 4.95987 5.48493 5.58480 6.34611 6.38850 6.62832 6.73573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C 0.004 3.996 3 Si 0.938 3.062 4 H -0.238 1.238 5 H -0.244 1.244 6 H -0.232 1.232 7 C -0.105 4.105 8 C 0.060 3.940 9 N -0.528 5.528 10 C 0.099 3.901 11 C -0.146 4.146 12 C -0.042 4.042 13 C -0.105 4.105 14 C 0.313 3.687 15 O -0.579 6.579 16 O -0.648 6.648 17 C -0.082 4.082 18 Cl 0.038 6.962 19 C 0.153 3.847 20 F -0.092 7.092 21 C 0.051 3.949 22 C -0.162 4.162 23 C 0.369 3.631 24 O -0.442 6.442 25 H 0.343 0.657 26 H 0.133 0.867 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.180 0.820 32 H 0.183 0.817 33 H 0.339 0.661 34 H 0.338 0.662 35 H 0.044 0.956 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.586 -3.454 -2.751 8.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.233 5.233 2 C -0.246 4.246 3 Si 0.753 3.247 4 H -0.162 1.162 5 H -0.166 1.166 6 H -0.154 1.154 7 C -0.125 4.125 8 C -0.068 4.068 9 N -0.250 5.250 10 C -0.029 4.029 11 C -0.150 4.150 12 C -0.060 4.060 13 C -0.123 4.123 14 C 0.297 3.703 15 O -0.408 6.408 16 O -0.476 6.476 17 C -0.110 4.110 18 Cl 0.067 6.933 19 C 0.131 3.869 20 F -0.070 7.070 21 C -0.077 4.077 22 C -0.200 4.200 23 C 0.242 3.758 24 O -0.314 6.314 25 H 0.160 0.840 26 H 0.150 0.850 27 H 0.119 0.881 28 H 0.077 0.923 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.197 0.803 32 H 0.200 0.800 33 H 0.176 0.824 34 H 0.174 0.826 35 H 0.063 0.937 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.946 -2.661 -3.022 9.810 hybrid contribution -3.075 0.644 0.802 3.242 sum 5.871 -2.017 -2.221 6.593 Atomic orbital electron populations 1.68076 1.09952 1.37510 1.07800 1.29833 0.96895 1.04899 0.92963 0.85622 0.81719 0.75061 0.82262 1.16153 1.16649 1.15449 1.21257 1.00657 0.93203 0.97413 1.22427 0.95127 0.86228 1.03013 1.62172 1.49019 1.02207 1.11555 1.21383 0.84566 0.97299 0.99644 1.21281 0.98984 0.95299 0.99403 1.21121 0.92618 0.97529 0.94744 1.21700 0.87807 1.00503 1.02308 1.28371 0.55479 0.94159 0.92326 1.93645 1.27427 1.51702 1.68064 1.93501 1.27355 1.56185 1.70518 1.21380 0.91510 0.97307 1.00850 1.98512 1.52153 1.55978 1.86615 1.16731 0.88311 0.89365 0.92472 1.91653 1.91179 1.58764 1.65429 1.22223 0.98715 0.99520 0.87245 1.22373 1.01755 0.92767 1.03113 1.24691 0.72858 0.89194 0.89038 1.90430 1.41083 1.53131 1.46732 0.84009 0.84996 0.88050 0.92317 0.87226 0.87674 0.80321 0.79991 0.82433 0.82579 0.93741 0.88558 0.88198 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 -0.58 12.57 56.22 0.71 0.12 16 2 C 0.00 0.00 4.37 -13.90 -0.06 -0.06 16 3 Si 0.94 -0.43 28.95 -169.99 -4.92 -5.35 16 4 H -0.24 0.17 7.11 56.52 0.40 0.57 16 5 H -0.24 -0.19 7.11 56.52 0.40 0.21 16 6 H -0.23 -0.07 7.11 56.52 0.40 0.33 16 7 C -0.11 0.17 2.55 -92.41 -0.24 -0.07 16 8 C 0.06 -0.13 2.69 -3.71 -0.01 -0.14 16 9 N -0.53 2.31 4.77 -235.81 -1.13 1.19 16 10 C 0.10 -0.58 5.36 -4.98 -0.03 -0.60 16 11 C -0.15 0.63 4.13 -104.47 -0.43 0.20 16 12 C -0.04 0.23 8.98 -39.64 -0.36 -0.12 16 13 C -0.11 0.26 9.75 -39.25 -0.38 -0.12 16 14 C 0.31 0.46 9.79 -38.67 -0.38 0.08 16 15 O -0.58 -3.54 14.63 -57.73 -0.84 -4.39 16 16 O -0.65 -4.26 17.25 -57.73 -1.00 -5.26 16 17 C -0.08 -0.09 6.36 -39.06 -0.25 -0.34 16 18 Cl 0.04 0.13 25.58 -51.86 -1.33 -1.20 16 19 C 0.15 -0.20 5.68 -39.44 -0.22 -0.43 16 20 F -0.09 0.07 13.10 2.25 0.03 0.10 16 21 C 0.05 -0.25 4.92 -3.71 -0.02 -0.27 16 22 C -0.16 0.59 6.35 -27.37 -0.17 0.41 16 23 C 0.37 -0.14 6.58 -28.32 -0.19 -0.33 16 24 O -0.44 -1.46 16.49 6.00 0.10 -1.36 16 25 H 0.34 -0.05 8.23 -40.82 -0.34 -0.39 16 26 H 0.13 -0.55 7.87 -51.92 -0.41 -0.95 16 27 H 0.10 -0.23 6.49 -51.93 -0.34 -0.56 16 28 H 0.06 -0.02 5.57 -51.93 -0.29 -0.31 16 29 H 0.11 -0.90 7.87 -51.93 -0.41 -1.31 16 30 H 0.11 -0.61 7.94 -51.92 -0.41 -1.02 16 31 H 0.18 -1.67 8.03 -52.49 -0.42 -2.10 16 32 H 0.18 -0.56 7.77 -52.48 -0.41 -0.97 16 33 H 0.34 1.14 8.90 45.56 0.41 1.55 16 34 H 0.34 1.33 8.90 45.56 0.41 1.74 16 35 H 0.04 -0.17 7.22 -51.92 -0.37 -0.55 16 36 H 0.10 -0.69 7.99 -51.93 -0.41 -1.11 16 37 H 0.10 -0.36 8.14 -51.93 -0.42 -0.78 16 38 H 0.11 -0.59 8.14 -51.93 -0.42 -1.01 16 LS Contribution 341.26 15.07 5.14 5.14 Total: 0.00 -10.86 341.26 -8.61 -19.47 By element: Atomic # 1 Polarization: -4.04 SS G_CDS: -2.64 Total: -6.68 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.73 Total: -1.79 kcal Atomic # 7 Polarization: 1.73 SS G_CDS: -0.42 Total: 1.31 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -1.74 Total: -11.01 kcal Atomic # 9 Polarization: 0.07 SS G_CDS: 0.03 Total: 0.10 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: -4.92 Total: -5.35 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.33 Total: -1.20 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -10.86 -8.61 -19.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250350991.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.276 kcal (2) G-P(sol) polarization free energy of solvation -10.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds