Wall clock time and date at job start Tue Mar 31 2020 22:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35930 * 116.99986 * 2 1 4 4 C 1.38707 * 120.05650 * 359.72179 * 3 2 1 5 5 C 1.38150 * 119.95366 * 180.29946 * 4 3 2 6 6 C 1.38282 * 120.07704 * 359.95953 * 5 4 3 7 7 C 1.50697 * 119.93922 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47110 * 270.01854 * 7 6 5 9 9 C 1.50702 * 109.47108 * 180.02562 * 8 7 6 10 10 O 1.20825 * 119.99998 * 359.97438 * 9 8 7 11 11 O 1.34227 * 120.00120 * 180.02562 * 9 8 7 12 12 C 1.45199 * 117.00163 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47108 * 179.97438 * 12 11 9 14 14 O 1.21297 * 120.00106 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99894 * 179.97438 * 13 12 11 16 16 C 1.37103 * 119.99864 * 180.02562 * 15 13 12 17 17 H 1.07999 * 119.99854 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99799 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00341 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99649 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47356 * 60.00187 * 20 18 16 22 22 H 1.48501 * 109.46800 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47101 * 299.99562 * 20 18 16 24 24 C 1.38249 * 120.12038 * 0.03767 * 6 5 4 25 25 C 1.38253 * 120.04031 * 359.97438 * 24 6 5 26 26 Cl 1.73601 * 120.03985 * 179.97438 * 25 24 6 27 27 H 1.08997 * 109.46894 * 300.00228 * 1 2 3 28 28 H 1.09001 * 109.46908 * 60.00014 * 1 2 3 29 29 H 1.09002 * 109.46907 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.02447 * 0.27659 * 4 3 2 31 31 H 1.07993 * 119.96357 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47317 * 30.02322 * 7 6 5 33 33 H 1.09000 * 109.47154 * 150.01851 * 7 6 5 34 34 H 1.08998 * 109.46958 * 299.99787 * 8 7 6 35 35 H 1.08992 * 109.47366 * 59.99952 * 8 7 6 36 36 H 1.08995 * 109.47297 * 299.99590 * 12 11 9 37 37 H 1.08999 * 109.46829 * 59.99805 * 12 11 9 38 38 H 0.96998 * 120.00310 * 0.02562 * 15 13 12 39 39 H 0.96991 * 120.00240 * 179.97438 * 19 18 16 40 40 H 1.07993 * 119.97937 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2919 2.3752 -0.0058 5 6 1.9213 3.6050 -0.0121 6 6 3.3022 3.6767 -0.0117 7 6 3.9856 5.0198 -0.0179 8 6 4.2172 5.4675 -1.4625 9 6 4.9011 6.8103 -1.4687 10 8 5.1748 7.3538 -0.4249 11 8 5.2054 7.4032 -2.6339 12 6 5.8630 8.6958 -2.5640 13 6 6.1246 9.2025 -3.9589 14 8 5.7894 8.5395 -4.9178 15 7 6.7302 10.3927 -4.1410 16 6 6.9678 10.8539 -5.4101 17 1 6.6693 10.2636 -6.2638 18 6 7.5925 12.0807 -5.5978 19 7 7.9552 12.7992 -4.5590 20 14 7.9156 12.7093 -7.3270 21 1 6.6271 12.8483 -8.0520 22 1 8.5877 14.0316 -7.2554 23 1 8.7883 11.7483 -8.0481 24 6 4.0571 2.5185 -0.0058 25 6 3.4323 1.2852 0.0002 26 17 4.3802 -0.1692 0.0069 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2133 2.3202 -0.0059 31 1 1.3342 4.5113 -0.0170 32 1 3.3570 5.7496 0.4923 33 1 4.9434 4.9425 0.4965 34 1 4.8458 4.7376 -1.9727 35 1 3.2595 5.5447 -1.9770 36 1 5.2222 9.4013 -2.0351 37 1 6.8085 8.5941 -2.0314 38 1 6.9979 10.9231 -3.3742 39 1 8.3917 13.6554 -4.6901 40 1 5.1354 2.5772 -0.0051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731237331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:17 Heat of formation + Delta-G solvation = -149.490137 kcal Electronic energy + Delta-G solvation = -25257.312591 eV Core-core repulsion = 21063.359172 eV Total energy + Delta-G solvation = -4193.953418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.73624 -40.29466 -38.39405 -38.06624 -36.77571 -36.16918 -34.00214 -33.87950 -31.38773 -31.33201 -30.09783 -28.45990 -27.67460 -25.15744 -24.28327 -23.17599 -21.68017 -20.46591 -19.57765 -18.70336 -18.07447 -17.66271 -17.05359 -16.48668 -16.34995 -16.23850 -16.05486 -15.40920 -14.93643 -14.69197 -14.48713 -14.40440 -14.12132 -14.02011 -13.73605 -13.35050 -13.01917 -12.68738 -12.51708 -12.24283 -12.10614 -11.91754 -11.85755 -11.63346 -11.61715 -11.30212 -11.23544 -11.11663 -11.11522 -10.49263 -10.42754 -10.40819 -10.28325 -9.59836 -9.30278 -8.54348 -8.49747 -8.08549 -6.50116 -3.92271 0.72412 0.83467 1.84710 2.31078 2.69835 2.74964 3.15341 3.17503 3.22699 3.27715 3.73712 4.10401 4.26424 4.32192 4.45520 4.65539 4.67750 4.71104 4.76616 4.81131 4.86695 5.01264 5.04788 5.14213 5.14795 5.26116 5.34176 5.55110 5.57319 5.61234 5.69837 5.74821 5.82445 6.05798 6.12661 6.20163 6.65010 6.78765 7.47362 7.84136 7.96203 8.48436 9.06808 9.39112 9.89193 10.66996 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.025100 B = 0.001589 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.278349 B =17616.159230 C =17685.833794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.133 3.867 4 C -0.196 4.196 5 C -0.068 4.068 6 C -0.106 4.106 7 C -0.065 4.065 8 C -0.109 4.109 9 C 0.458 3.542 10 O -0.516 6.516 11 O -0.326 6.326 12 C 0.061 3.939 13 C 0.437 3.563 14 O -0.576 6.576 15 N -0.552 5.552 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.897 5.897 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.067 4.067 25 C -0.067 4.067 26 Cl -0.058 7.058 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.395 0.605 39 H 0.274 0.726 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.589 -22.151 13.563 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.086 3.914 4 C -0.214 4.214 5 C -0.086 4.086 6 C -0.106 4.106 7 C -0.102 4.102 8 C -0.147 4.147 9 C 0.301 3.699 10 O -0.405 6.405 11 O -0.241 6.241 12 C -0.017 4.017 13 C 0.222 3.778 14 O -0.461 6.461 15 N -0.190 5.190 16 C -0.433 4.433 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.538 5.538 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.085 4.085 25 C -0.094 4.094 26 Cl -0.029 7.029 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.228 0.772 39 H 0.084 0.916 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.457 -22.540 13.209 29.387 hybrid contribution 0.228 0.847 -0.222 0.904 sum -13.229 -21.693 12.987 28.535 Atomic orbital electron populations 1.23128 0.77930 1.04331 1.01557 1.86164 1.21635 1.25904 1.88261 1.18706 0.90531 0.85231 0.96887 1.21207 1.00318 0.91587 1.08326 1.21008 0.93943 0.97467 0.96177 1.19681 0.93417 0.94610 1.02932 1.20358 1.02017 0.92669 0.95141 1.21367 1.02633 0.91554 0.99098 1.23725 0.76456 0.87834 0.81918 1.90657 1.51111 1.65346 1.33433 1.86556 1.70167 1.34083 1.33256 1.22738 0.97978 0.82260 0.98718 1.19344 0.85497 0.84107 0.88829 1.90563 1.55988 1.57777 1.41732 1.41702 1.51535 1.16257 1.09481 1.19682 1.36477 1.02599 0.84505 0.87668 1.25309 0.96663 0.96060 0.99689 1.69602 1.40325 1.13748 1.30087 0.85853 0.78824 0.77789 0.81386 1.19773 1.20870 1.19755 1.20880 1.00783 0.89222 0.97637 1.20161 0.88747 0.88940 1.11559 1.98373 1.71479 1.35961 1.97080 0.92435 0.92329 0.87932 0.84485 0.84782 0.89545 0.89582 0.87342 0.87386 0.89571 0.89561 0.77157 0.91576 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.61 9.96 -19.52 -0.19 -2.80 16 3 C 0.13 1.18 6.68 -39.19 -0.26 0.92 16 4 C -0.20 -1.40 9.04 -39.44 -0.36 -1.76 16 5 C -0.07 -0.49 9.69 -39.60 -0.38 -0.87 16 6 C -0.11 -0.85 5.13 -104.60 -0.54 -1.39 16 7 C -0.06 -0.55 4.63 -27.88 -0.13 -0.68 16 8 C -0.11 -1.08 5.79 -27.88 -0.16 -1.24 16 9 C 0.46 6.67 7.96 36.01 0.29 6.95 16 10 O -0.52 -8.41 15.73 -18.75 -0.29 -8.71 16 11 O -0.33 -5.91 9.75 -45.89 -0.45 -6.36 16 12 C 0.06 1.14 5.94 36.01 0.21 1.36 16 13 C 0.44 10.52 7.86 -10.98 -0.09 10.44 16 14 O -0.58 -16.02 16.08 -14.12 -0.23 -16.25 16 15 N -0.55 -13.94 5.29 -10.96 -0.06 -13.99 16 16 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 17 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.90 -23.97 13.05 55.50 0.72 -23.24 16 20 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 C -0.07 -0.57 9.48 -39.57 -0.38 -0.94 16 25 C -0.07 -0.63 6.33 -39.36 -0.25 -0.88 16 26 Cl -0.06 -0.56 28.50 -51.86 -1.48 -2.04 16 27 H 0.06 0.19 7.67 -51.93 -0.40 -0.21 16 28 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.14 0.66 6.30 -52.49 -0.33 0.33 16 31 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.09 0.73 8.04 -51.93 -0.42 0.31 16 33 H 0.09 0.75 8.04 -51.93 -0.42 0.34 16 34 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.47 8.13 -51.93 -0.42 1.05 16 37 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 38 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 40 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -33.66 370.65 -7.46 -41.11 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.75 Total: 6.00 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -1.29 Total: 5.07 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.67 Total: -37.24 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -1.16 Total: -34.12 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.48 Total: -2.04 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.66 -7.46 -41.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.378 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds