Wall clock time and date at job start Tue Mar 31 2020 22:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35930 * 116.99986 * 2 1 4 4 C 1.38707 * 120.05650 * 359.72179 * 3 2 1 5 5 C 1.38150 * 119.95366 * 180.29946 * 4 3 2 6 6 C 1.38282 * 120.07704 * 359.95953 * 5 4 3 7 7 C 1.50697 * 119.93922 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47110 * 270.01854 * 7 6 5 9 9 C 1.50702 * 109.47108 * 180.02562 * 8 7 6 10 10 O 1.20825 * 119.99998 * 359.97438 * 9 8 7 11 11 O 1.34227 * 120.00120 * 180.02562 * 9 8 7 12 12 C 1.45199 * 117.00163 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47108 * 179.97438 * 12 11 9 14 14 O 1.21297 * 120.00106 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99894 * 179.97438 * 13 12 11 16 16 C 1.37103 * 119.99864 * 180.02562 * 15 13 12 17 17 H 1.07999 * 119.99854 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99799 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00341 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99649 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47356 * 60.00187 * 20 18 16 22 22 H 1.48501 * 109.46800 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47101 * 299.99562 * 20 18 16 24 24 C 1.38249 * 120.12038 * 0.03767 * 6 5 4 25 25 C 1.38253 * 120.04031 * 359.97438 * 24 6 5 26 26 Cl 1.73601 * 120.03985 * 179.97438 * 25 24 6 27 27 H 1.08997 * 109.46894 * 300.00228 * 1 2 3 28 28 H 1.09001 * 109.46908 * 60.00014 * 1 2 3 29 29 H 1.09002 * 109.46907 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.02447 * 0.27659 * 4 3 2 31 31 H 1.07993 * 119.96357 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47317 * 30.02322 * 7 6 5 33 33 H 1.09000 * 109.47154 * 150.01851 * 7 6 5 34 34 H 1.08998 * 109.46958 * 299.99787 * 8 7 6 35 35 H 1.08992 * 109.47366 * 59.99952 * 8 7 6 36 36 H 1.08995 * 109.47297 * 299.99590 * 12 11 9 37 37 H 1.08999 * 109.46829 * 59.99805 * 12 11 9 38 38 H 0.96998 * 120.00310 * 0.02562 * 15 13 12 39 39 H 0.96991 * 120.00240 * 179.97438 * 19 18 16 40 40 H 1.07993 * 119.97937 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2919 2.3752 -0.0058 5 6 1.9213 3.6050 -0.0121 6 6 3.3022 3.6767 -0.0117 7 6 3.9856 5.0198 -0.0179 8 6 4.2172 5.4675 -1.4625 9 6 4.9011 6.8103 -1.4687 10 8 5.1748 7.3538 -0.4249 11 8 5.2054 7.4032 -2.6339 12 6 5.8630 8.6958 -2.5640 13 6 6.1246 9.2025 -3.9589 14 8 5.7894 8.5395 -4.9178 15 7 6.7302 10.3927 -4.1410 16 6 6.9678 10.8539 -5.4101 17 1 6.6693 10.2636 -6.2638 18 6 7.5925 12.0807 -5.5978 19 7 7.9552 12.7992 -4.5590 20 14 7.9156 12.7093 -7.3270 21 1 6.6271 12.8483 -8.0520 22 1 8.5877 14.0316 -7.2554 23 1 8.7883 11.7483 -8.0481 24 6 4.0571 2.5185 -0.0058 25 6 3.4323 1.2852 0.0002 26 17 4.3802 -0.1692 0.0069 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2133 2.3202 -0.0059 31 1 1.3342 4.5113 -0.0170 32 1 3.3570 5.7496 0.4923 33 1 4.9434 4.9425 0.4965 34 1 4.8458 4.7376 -1.9727 35 1 3.2595 5.5447 -1.9770 36 1 5.2222 9.4013 -2.0351 37 1 6.8085 8.5941 -2.0314 38 1 6.9979 10.9231 -3.3742 39 1 8.3917 13.6554 -4.6901 40 1 5.1354 2.5772 -0.0051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731237331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:16 Heat of formation + Delta-G solvation = -169.327040 kcal Electronic energy + Delta-G solvation = -25258.172783 eV Core-core repulsion = 21063.359172 eV Total energy + Delta-G solvation = -4194.813611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.67966 -41.18315 -40.04342 -38.87692 -37.59802 -37.37869 -36.02668 -34.62805 -33.41235 -31.90098 -30.94521 -29.78809 -28.24371 -26.69570 -25.45425 -23.74492 -22.47727 -21.48579 -21.38441 -20.06783 -19.24717 -18.85087 -17.92873 -17.85310 -17.45758 -17.25567 -16.74856 -16.65377 -16.28290 -15.99523 -15.75981 -15.39932 -15.02616 -14.90755 -14.67767 -14.41690 -14.29583 -13.70255 -13.64447 -13.54416 -13.24153 -12.95170 -12.92505 -12.72844 -12.48531 -12.46290 -12.20328 -12.12561 -11.91314 -11.86115 -11.79790 -11.77784 -11.58250 -11.56575 -10.50615 -10.11594 -9.89901 -9.12051 -8.51902 -6.02713 0.13412 0.23351 1.16195 1.18987 1.38162 1.40317 1.48256 1.58292 1.87850 2.27362 2.30526 2.56402 3.06736 3.13604 3.59389 3.74859 3.85188 3.99235 4.00690 4.07133 4.18082 4.23494 4.24832 4.29609 4.38955 4.41396 4.43869 4.61136 4.69858 4.76304 4.92348 5.02363 5.14302 5.19846 5.36481 5.42048 5.52976 5.64809 5.89434 6.28538 6.46521 6.69149 7.03207 7.40351 7.94010 8.64749 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.025100 B = 0.001589 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.278349 B =17616.159230 C =17685.833794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.123 3.877 4 C -0.194 4.194 5 C -0.066 4.066 6 C -0.109 4.109 7 C -0.056 4.056 8 C -0.102 4.102 9 C 0.459 3.541 10 O -0.534 6.534 11 O -0.347 6.347 12 C 0.072 3.928 13 C 0.435 3.565 14 O -0.619 6.619 15 N -0.558 5.558 16 C -0.340 4.340 17 H 0.084 0.916 18 C -0.008 4.008 19 N -0.915 5.915 20 Si 0.998 3.002 21 H -0.270 1.270 22 H -0.269 1.269 23 H -0.270 1.270 24 C -0.072 4.072 25 C -0.088 4.088 26 Cl -0.070 7.070 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.400 0.600 39 H 0.281 0.719 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.694 -21.988 13.928 29.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.076 3.924 4 C -0.213 4.213 5 C -0.083 4.083 6 C -0.110 4.110 7 C -0.093 4.093 8 C -0.139 4.139 9 C 0.303 3.697 10 O -0.423 6.423 11 O -0.263 6.263 12 C -0.006 4.006 13 C 0.222 3.778 14 O -0.506 6.506 15 N -0.195 5.195 16 C -0.469 4.469 17 H 0.102 0.898 18 C -0.209 4.209 19 N -0.554 5.554 20 Si 0.821 3.179 21 H -0.195 1.195 22 H -0.194 1.194 23 H -0.195 1.195 24 C -0.091 4.091 25 C -0.115 4.115 26 Cl -0.041 7.041 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.135 0.865 30 H 0.179 0.821 31 H 0.174 0.826 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.234 0.766 39 H 0.090 0.910 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.565 -22.376 13.615 29.970 hybrid contribution 0.502 0.741 -0.272 0.935 sum -14.063 -21.635 13.344 29.050 Atomic orbital electron populations 1.23406 0.76002 1.05735 1.02624 1.86140 1.23738 1.26050 1.88207 1.18929 0.90552 0.86023 0.96850 1.21488 1.01514 0.90886 1.07373 1.21303 0.93729 0.98379 0.94939 1.19629 0.93862 0.93918 1.03585 1.20271 1.02004 0.92953 0.94064 1.21532 1.03080 0.88791 1.00486 1.24590 0.75787 0.88668 0.80614 1.90648 1.51928 1.66062 1.33706 1.86568 1.70575 1.33665 1.35476 1.22480 0.99616 0.83505 0.94970 1.20177 0.83850 0.83194 0.90611 1.90525 1.57400 1.58786 1.43882 1.41745 1.51838 1.16884 1.09052 1.19694 1.38588 1.03609 0.85024 0.89773 1.26120 0.95615 0.95551 1.03616 1.69662 1.40015 1.14026 1.31737 0.84914 0.78724 0.77583 0.76676 1.19491 1.19383 1.19546 1.20992 1.01248 0.89225 0.97621 1.20367 0.89289 0.88809 1.13083 1.98359 1.71827 1.36730 1.97226 0.91196 0.91317 0.86543 0.82064 0.82619 0.89196 0.90026 0.86173 0.85546 0.87571 0.87726 0.76562 0.90962 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.23 16 2 O -0.33 -5.27 9.96 -92.76 -0.92 -6.19 16 3 C 0.12 2.04 6.68 22.52 0.15 2.20 16 4 C -0.19 -2.34 9.04 22.36 0.20 -2.13 16 5 C -0.07 -0.77 9.69 22.26 0.22 -0.56 16 6 C -0.11 -1.56 5.13 -19.85 -0.10 -1.66 16 7 C -0.06 -0.84 4.63 29.85 0.14 -0.70 16 8 C -0.10 -1.80 5.79 29.85 0.17 -1.63 16 9 C 0.46 12.67 7.96 71.24 0.57 13.23 16 10 O -0.53 -16.56 15.73 21.97 0.35 -16.22 16 11 O -0.35 -12.27 9.75 -45.03 -0.44 -12.71 16 12 C 0.07 2.64 5.94 71.24 0.42 3.06 16 13 C 0.43 21.13 7.86 87.66 0.69 21.82 16 14 O -0.62 -35.12 16.08 15.72 0.25 -34.87 16 15 N -0.56 -28.49 5.29 -306.98 -1.62 -30.12 16 16 C -0.34 -19.04 9.68 84.04 0.81 -18.23 16 17 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 18 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 19 N -0.91 -48.30 13.05 21.66 0.28 -48.02 16 20 Si 1.00 41.83 29.55 68.60 2.03 43.85 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 C -0.07 -1.17 9.48 22.28 0.21 -0.96 16 25 C -0.09 -1.63 6.33 22.41 0.14 -1.49 16 26 Cl -0.07 -1.37 28.50 -2.72 -0.08 -1.45 16 27 H 0.07 0.31 7.67 -2.39 -0.02 0.29 16 28 H 0.07 0.34 7.65 -2.39 -0.02 0.32 16 29 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.16 1.05 6.30 -2.91 -0.02 1.03 16 31 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 32 H 0.09 1.31 8.04 -2.39 -0.02 1.29 16 33 H 0.08 1.31 8.04 -2.39 -0.02 1.30 16 34 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.11 3.49 8.13 -2.39 -0.02 3.47 16 37 H 0.10 3.47 8.13 -2.39 -0.02 3.45 16 38 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 39 H 0.28 13.87 8.31 -92.71 -0.77 13.09 16 40 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -72.76 370.65 5.41 -67.36 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.36 Total: 24.15 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 5.20 Total: 14.22 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -1.34 Total: -78.14 kcal Atomic # 8 Polarization: -69.22 SS G_CDS: -0.76 Total: -69.99 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -72.76 5.41 -67.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.972 kcal (2) G-P(sol) polarization free energy of solvation -72.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds