Wall clock time and date at job start Wed Apr 1 2020 00:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34233 * 116.99399 * 2 1 4 4 O 1.20822 * 120.00610 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99499 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.46753 * 186.59614 * 5 3 2 7 7 H 1.09000 * 109.47163 * 306.58412 * 6 5 3 8 8 N 1.46507 * 109.46811 * 186.58667 * 6 5 3 9 9 C 1.34775 * 120.00228 * 84.19290 * 8 6 5 10 10 O 1.21287 * 119.99471 * 354.96679 * 9 8 6 11 11 C 1.50699 * 120.00225 * 174.97040 * 9 8 6 12 12 S 1.80997 * 109.46982 * 179.97438 * 11 9 8 13 13 C 1.76206 * 99.99905 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99377 * 0.02562 * 13 12 11 15 15 C 1.38794 * 119.99941 * 179.97438 * 13 12 11 16 16 N 1.31635 * 119.99972 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00393 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47076 * 89.99428 * 17 15 13 19 19 H 1.48495 * 109.47512 * 209.99928 * 17 15 13 20 20 H 1.48499 * 109.46977 * 330.00046 * 17 15 13 21 21 C 1.50696 * 109.47245 * 66.58968 * 6 5 3 22 22 C 1.38244 * 119.97486 * 79.71953 * 21 6 5 23 23 C 1.38203 * 120.02196 * 179.76797 * 22 21 6 24 24 C 1.38465 * 119.97501 * 0.51078 * 23 22 21 25 25 F 1.35095 * 120.02126 * 179.76745 * 24 23 22 26 26 C 1.38461 * 119.94697 * 359.74242 * 24 23 22 27 27 C 1.38193 * 119.97627 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.46651 * 60.00563 * 1 2 3 29 29 H 1.08997 * 109.46829 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47281 * 300.00427 * 1 2 3 31 31 H 1.09007 * 109.46650 * 66.59791 * 5 3 2 32 32 H 1.08996 * 109.46951 * 306.59781 * 5 3 2 33 33 H 0.96995 * 119.99718 * 264.19238 * 8 6 5 34 34 H 1.08995 * 109.46890 * 300.00228 * 11 9 8 35 35 H 1.09006 * 109.46898 * 59.99970 * 11 9 8 36 36 H 0.96996 * 120.00212 * 179.97438 * 16 15 13 37 37 H 1.07989 * 119.98919 * 0.02562 * 22 21 6 38 38 H 1.07999 * 120.01072 * 180.25552 * 23 22 21 39 39 H 1.07998 * 120.00864 * 179.97438 * 26 24 23 40 40 H 1.07998 * 119.98981 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0004 2.7327 0.1662 7 1 3.5116 3.3456 -0.5911 8 7 5.4539 2.8301 0.0097 9 6 5.9941 2.9279 -1.2212 10 8 5.2863 2.8436 -2.2025 11 6 7.4775 3.1420 -1.3782 12 16 7.8915 3.2300 -3.1380 13 6 9.6328 3.4773 -3.0307 14 1 10.1122 3.5296 -2.0643 15 6 10.3883 3.6037 -4.1881 16 7 11.6893 3.7879 -4.1080 17 14 9.5592 3.5124 -5.8595 18 1 9.1418 4.8741 -6.2800 19 1 10.5112 2.9571 -6.8547 20 1 8.3654 2.6336 -5.7725 21 6 3.6090 3.2208 1.5371 22 6 4.3852 2.8953 2.6338 23 6 4.0297 3.3464 3.8909 24 6 2.8900 4.1158 4.0531 25 9 2.5392 4.5533 5.2821 26 6 2.1106 4.4368 2.9546 27 6 2.4706 3.9886 1.6979 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.9509 0.8862 -0.9424 32 1 3.9609 0.6823 0.8259 33 1 6.0273 2.8242 0.7919 34 1 7.7638 4.0736 -0.8902 35 1 8.0150 2.3117 -0.9199 36 1 12.2174 3.8759 -4.9168 37 1 5.2717 2.2917 2.5077 38 1 4.6385 3.0954 4.7469 39 1 1.2213 5.0365 3.0801 40 1 1.8631 4.2392 0.8409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052872396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:10 Heat of formation + Delta-G solvation = -163.374547 kcal Electronic energy + Delta-G solvation = -26480.263286 eV Core-core repulsion = 22300.124291 eV Total energy + Delta-G solvation = -4180.138996 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.93367 -41.90359 -40.84635 -39.87404 -37.62986 -36.43329 -34.64568 -33.24714 -32.13208 -30.92817 -30.50599 -28.36376 -27.82100 -25.46819 -24.21503 -22.81214 -21.97291 -21.25475 -19.95873 -18.92210 -18.76354 -18.15427 -17.84416 -17.54984 -17.20381 -17.04718 -16.97458 -16.61998 -16.36530 -16.07844 -15.61304 -15.26308 -15.01831 -14.87500 -14.66371 -14.50808 -14.30378 -14.19677 -13.83696 -13.63363 -13.41340 -13.31719 -13.06741 -12.99271 -12.80718 -12.64701 -12.29606 -11.93939 -11.84918 -11.78377 -11.56592 -11.14949 -11.04948 -10.49777 -10.36750 -10.08206 -9.65043 -8.95976 -8.49216 -6.19183 0.01695 0.25112 1.00168 1.15828 1.33424 1.44337 1.49978 1.54086 1.73983 2.24481 2.28006 2.56117 2.74677 2.89452 3.22203 3.39878 3.64519 3.72401 3.81856 3.94720 4.01946 4.13110 4.27841 4.29276 4.31221 4.33832 4.38628 4.52803 4.56301 4.71384 4.72516 4.93425 4.95458 5.11525 5.17321 5.25056 5.39874 5.51461 5.73356 5.85810 6.14781 6.40429 6.69274 6.96483 7.13899 8.63099 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.002697 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.517994 B =10378.465074 C =11981.712464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.468 3.532 4 O -0.522 6.522 5 C -0.122 4.122 6 C 0.210 3.790 7 H 0.084 0.916 8 N -0.704 5.704 9 C 0.541 3.459 10 O -0.554 6.554 11 C -0.112 4.112 12 S -0.176 6.176 13 C -0.526 4.526 14 H 0.064 0.936 15 C 0.045 3.955 16 N -0.918 5.918 17 Si 0.913 3.087 18 H -0.265 1.265 19 H -0.261 1.261 20 H -0.234 1.234 21 C -0.114 4.114 22 C -0.077 4.077 23 C -0.151 4.151 24 C 0.086 3.914 25 F -0.148 7.148 26 C -0.162 4.162 27 C -0.061 4.061 28 H 0.059 0.941 29 H 0.128 0.872 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.138 0.862 33 H 0.420 0.580 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.276 0.724 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.144 0.856 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.575 -6.592 17.821 28.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.282 6.282 3 C 0.311 3.689 4 O -0.411 6.411 5 C -0.161 4.161 6 C 0.104 3.896 7 H 0.102 0.898 8 N -0.359 5.359 9 C 0.327 3.673 10 O -0.431 6.431 11 C -0.263 4.263 12 S 0.051 5.949 13 C -0.674 4.674 14 H 0.082 0.918 15 C -0.160 4.160 16 N -0.556 5.556 17 Si 0.735 3.265 18 H -0.190 1.190 19 H -0.186 1.186 20 H -0.158 1.158 21 C -0.115 4.115 22 C -0.095 4.095 23 C -0.170 4.170 24 C 0.067 3.933 25 F -0.127 7.127 26 C -0.181 4.181 27 C -0.080 4.080 28 H 0.078 0.922 29 H 0.146 0.854 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.156 0.844 33 H 0.259 0.741 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.086 0.914 37 H 0.181 0.819 38 H 0.177 0.823 39 H 0.162 0.838 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.811 -6.388 16.171 28.682 hybrid contribution 0.917 0.545 0.818 1.344 sum -21.894 -5.842 16.990 28.322 Atomic orbital electron populations 1.23515 0.74801 1.05544 1.02491 1.86500 1.24989 1.32890 1.83809 1.23676 0.92192 0.81418 0.71612 1.90630 1.67755 1.36682 1.46079 1.21827 0.87722 0.98856 1.07685 1.19277 0.80781 0.94555 0.94960 0.89806 1.45755 1.06770 1.75333 1.08044 1.19978 0.89030 0.74973 0.83279 1.90723 1.62993 1.49909 1.39456 1.23280 0.95341 1.07593 1.00073 1.84744 1.07270 1.95720 1.07172 1.22472 0.91664 1.56537 0.96699 0.91755 1.25552 0.94842 0.93053 1.02598 1.70016 1.06323 1.48379 1.30928 0.85886 0.80383 0.80468 0.79759 1.18960 1.18590 1.15799 1.19816 0.97041 1.00467 0.94141 1.21093 0.99738 0.98418 0.90297 1.21360 0.96489 0.99316 0.99804 1.18029 0.96633 0.98879 0.79789 1.91484 1.91959 1.88026 1.41195 1.21284 1.01693 1.03367 0.91731 1.21041 0.95482 0.94375 0.97060 0.92215 0.85365 0.91706 0.86977 0.84399 0.74096 0.86774 0.86039 0.91449 0.81879 0.82327 0.83842 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.57 16 2 O -0.37 -6.66 10.57 -51.44 -0.54 -7.21 16 3 C 0.47 9.50 7.64 71.24 0.54 10.04 16 4 O -0.52 -12.51 12.60 21.98 0.28 -12.24 16 5 C -0.12 -2.13 5.54 29.85 0.17 -1.96 16 6 C 0.21 4.12 1.91 44.24 0.08 4.20 16 7 H 0.08 2.17 7.20 -2.39 -0.02 2.15 16 8 N -0.70 -13.78 5.03 -446.09 -2.24 -16.03 16 9 C 0.54 16.32 7.79 87.66 0.68 17.00 16 10 O -0.55 -21.39 15.44 -3.05 -0.05 -21.44 16 11 C -0.11 -3.80 6.16 71.24 0.44 -3.36 16 12 S -0.18 -8.44 18.55 -56.49 -1.05 -9.49 16 13 C -0.53 -29.64 10.04 67.95 0.68 -28.95 16 14 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 15 C 0.04 2.58 5.50 84.86 0.47 3.04 16 16 N -0.92 -55.12 13.97 21.65 0.30 -54.82 16 17 Si 0.91 44.17 27.74 68.60 1.90 46.07 16 18 H -0.26 -12.59 7.11 99.48 0.71 -11.89 16 19 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.23 -11.21 6.74 99.48 0.67 -10.54 16 21 C -0.11 -1.92 4.51 -19.86 -0.09 -2.01 16 22 C -0.08 -0.95 9.01 22.26 0.20 -0.75 16 23 C -0.15 -2.02 10.03 22.32 0.22 -1.79 16 24 C 0.09 1.49 7.30 22.38 0.16 1.65 16 25 F -0.15 -2.84 17.27 44.97 0.78 -2.06 16 26 C -0.16 -2.85 10.03 22.31 0.22 -2.63 16 27 C -0.06 -1.16 8.15 22.26 0.18 -0.97 16 28 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 29 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 31 H 0.11 2.27 7.99 -2.38 -0.02 2.25 16 32 H 0.14 1.54 8.11 -2.39 -0.02 1.52 16 33 H 0.42 5.31 6.89 -92.71 -0.64 4.67 16 34 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 35 H 0.12 3.62 8.14 -2.39 -0.02 3.60 16 36 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.16 0.98 6.94 -2.92 -0.02 0.96 16 38 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 40 H 0.13 2.80 6.86 -2.91 -0.02 2.78 16 Total: -1.00 -74.94 363.41 4.95 -69.99 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.41 Total: 12.14 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 5.17 Total: -4.91 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -1.94 Total: -70.85 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.31 Total: -40.89 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.90 Total: 46.07 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.05 Total: -9.49 kcal Total: -74.94 4.95 -69.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052872396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.387 kcal (2) G-P(sol) polarization free energy of solvation -74.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds