Wall clock time and date at job start Tue Mar 31 2020 23:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47000 * 2 1 4 4 C 1.50698 * 109.47150 * 119.99804 * 2 1 3 5 5 O 1.21286 * 119.99998 * 113.21157 * 4 2 1 6 6 N 1.34780 * 120.00155 * 293.49126 * 4 2 1 7 7 C 1.39976 * 120.00234 * 184.06630 * 6 4 2 8 8 C 1.38856 * 120.07275 * 333.49430 * 7 6 4 9 9 C 1.38114 * 119.94005 * 179.71715 * 8 7 6 10 10 C 1.38292 * 120.09199 * 0.53750 * 9 8 7 11 11 N 1.48022 * 119.92747 * 179.74275 * 10 9 8 12 12 O 1.21798 * 120.00166 * 180.02562 * 11 10 9 13 13 O 1.21799 * 119.99961 * 0.02562 * 11 10 9 14 14 C 1.38268 * 120.15211 * 359.75659 * 10 9 8 15 15 C 1.38223 * 120.05286 * 359.96537 * 14 10 9 16 16 Cl 1.73598 * 120.04440 * 179.97438 * 15 14 10 17 17 N 1.46900 * 109.46647 * 239.99765 * 2 1 3 18 18 C 1.46898 * 111.00155 * 74.86117 * 17 2 1 19 19 C 1.46897 * 111.00170 * 310.90080 * 17 2 1 20 20 C 1.50700 * 109.47184 * 190.00346 * 19 17 2 21 21 H 1.08001 * 119.99698 * 359.97438 * 20 19 17 22 22 C 1.37876 * 120.00110 * 180.02562 * 20 19 17 23 23 N 1.31514 * 119.99969 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 119.99987 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47404 * 89.99996 * 24 22 20 26 26 H 1.48503 * 109.47268 * 210.00292 * 24 22 20 27 27 H 1.48500 * 109.47030 * 329.99985 * 24 22 20 28 28 H 1.09003 * 109.47051 * 300.00663 * 1 2 3 29 29 H 1.09000 * 109.47144 * 60.00109 * 1 2 3 30 30 H 1.08993 * 109.47400 * 180.02562 * 1 2 3 31 31 H 0.97005 * 119.99493 * 4.05783 * 6 4 2 32 32 H 1.08003 * 120.02654 * 359.97438 * 8 7 6 33 33 H 1.07998 * 119.95655 * 180.24612 * 9 8 7 34 34 H 1.07995 * 119.96919 * 179.97438 * 14 10 9 35 35 H 1.09004 * 109.47258 * 54.82678 * 18 17 2 36 36 H 1.08998 * 109.47234 * 174.83173 * 18 17 2 37 37 H 1.08997 * 109.47235 * 294.83045 * 18 17 2 38 38 H 1.08995 * 109.47318 * 310.00405 * 19 17 2 39 39 H 1.09002 * 109.46759 * 70.00545 * 19 17 2 40 40 H 0.97002 * 119.99820 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.6248 -1.7632 1.1235 6 7 1.8184 -0.1785 2.4503 7 6 2.3578 -0.7931 3.5863 8 6 2.6180 -2.1571 3.5821 9 6 3.1558 -2.7597 4.7025 10 6 3.4250 -2.0086 5.8320 11 7 3.9960 -2.6592 7.0327 12 8 4.2332 -1.9990 8.0284 13 8 4.2287 -3.8547 7.0250 14 6 3.1617 -0.6512 5.8425 15 6 2.6289 -0.0408 4.7227 16 17 2.2978 1.6633 4.7363 17 7 2.0196 -0.6926 -1.1994 18 6 1.8574 0.1460 -2.3946 19 6 1.3485 -1.9881 -1.3701 20 6 2.0397 -2.7728 -2.4552 21 1 2.8921 -2.3511 -2.9671 22 6 1.5833 -4.0287 -2.7951 23 7 2.1869 -4.7137 -3.7417 24 14 0.1087 -4.7577 -1.9102 25 1 -1.1353 -4.3827 -2.6294 26 1 0.2337 -6.2370 -1.8756 27 1 0.0552 -4.2329 -0.5221 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.2906 0.6303 2.5408 32 1 2.4040 -2.7454 2.7021 33 1 3.3620 -3.8198 4.6982 34 1 3.3727 -0.0676 6.7263 35 1 2.3454 1.1072 -2.2331 36 1 2.3102 -0.3519 -3.2520 37 1 0.7961 0.3049 -2.5856 38 1 1.3917 -2.5457 -0.4347 39 1 0.3072 -1.8240 -1.6475 40 1 1.8656 -5.5971 -3.9811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078636692.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:21 Heat of formation + Delta-G solvation = 7.993667 kcal Electronic energy + Delta-G solvation = -27260.532454 eV Core-core repulsion = 23105.700797 eV Total energy + Delta-G solvation = -4154.831657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 19.88 seconds Orbital eigenvalues (eV) -42.38038 -41.17402 -39.34055 -37.20941 -37.00783 -36.73298 -35.29588 -32.74878 -31.69874 -31.49415 -30.17964 -28.02316 -26.69056 -25.52167 -24.06623 -23.75533 -22.60121 -21.22463 -19.81246 -19.66743 -18.81102 -18.30869 -17.71381 -17.28174 -17.01202 -16.07131 -15.84125 -15.24839 -15.06486 -14.79983 -14.46499 -14.21917 -14.06664 -13.91685 -13.63295 -13.26369 -12.72064 -12.48289 -12.33698 -12.26824 -12.08470 -11.83574 -11.78888 -11.70751 -11.38454 -11.32658 -11.31247 -11.25016 -11.11599 -10.67038 -10.36597 -9.99980 -9.77568 -9.60082 -9.22767 -8.91788 -8.59904 -7.61534 -6.07882 -4.04275 -0.47254 0.37453 1.00463 1.02136 1.48063 2.33111 2.41026 2.88109 3.22334 3.31193 3.31710 3.93437 4.16915 4.21095 4.31233 4.37939 4.50034 4.58474 4.86543 4.98499 5.03441 5.12680 5.25011 5.29667 5.38851 5.46788 5.60189 5.69407 5.82657 5.98039 6.03794 6.10746 6.21388 6.51537 6.71827 6.79954 6.89857 7.45210 7.50918 7.67596 7.83439 7.90623 8.59125 8.99978 9.53333 11.05520 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.012510 B = 0.003335 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.688845 B = 8393.059766 C =10067.185361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.066 3.934 3 H 0.104 0.896 4 C 0.517 3.483 5 O -0.462 6.462 6 N -0.673 5.673 7 C 0.230 3.770 8 C -0.128 4.128 9 C -0.022 4.022 10 C -0.066 4.066 11 N 0.035 4.965 12 O -0.166 6.166 13 O -0.158 6.158 14 C -0.022 4.022 15 C -0.084 4.084 16 Cl -0.038 7.038 17 N -0.510 5.510 18 C 0.037 3.963 19 C 0.158 3.842 20 C -0.504 4.504 21 H 0.080 0.920 22 C 0.069 3.931 23 N -0.900 5.900 24 Si 0.873 3.127 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.269 1.269 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.416 0.584 32 H 0.187 0.813 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.019 0.981 38 H 0.043 0.957 39 H -0.015 1.015 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 13.955 17.260 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.047 4.047 3 H 0.122 0.878 4 C 0.304 3.696 5 O -0.330 6.330 6 N -0.318 5.318 7 C 0.129 3.871 8 C -0.149 4.149 9 C -0.042 4.042 10 C -0.151 4.151 11 N 0.554 4.446 12 O -0.380 6.380 13 O -0.374 6.374 14 C -0.043 4.043 15 C -0.115 4.115 16 Cl -0.009 7.009 17 N -0.234 5.234 18 C -0.111 4.111 19 C 0.032 3.968 20 C -0.542 4.542 21 H 0.098 0.902 22 C -0.132 4.132 23 N -0.539 5.539 24 Si 0.700 3.300 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.254 0.746 32 H 0.204 0.796 33 H 0.181 0.819 34 H 0.182 0.818 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.037 0.963 38 H 0.061 0.939 39 H 0.002 0.998 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.940 13.406 16.400 21.385 hybrid contribution -1.761 0.142 0.722 1.908 sum -4.701 13.547 17.122 22.333 Atomic orbital electron populations 1.22466 0.95369 1.03880 1.02747 1.21613 0.94068 0.98323 0.90669 0.87849 1.21312 0.78852 0.85959 0.83432 1.90716 1.36740 1.20555 1.84994 1.44057 1.52705 1.30329 1.04737 1.17964 0.91765 0.91616 0.85710 1.21863 1.00461 0.92457 1.00095 1.21167 0.91809 1.02075 0.89105 1.20867 1.12522 0.93549 0.88142 1.43452 0.98258 1.00971 1.01916 1.94532 1.55962 1.64407 1.23117 1.94563 1.55761 0.97612 1.89444 1.20536 0.93357 0.92073 0.98287 1.20294 1.08984 0.86791 0.95416 1.98399 1.93913 1.10118 1.98468 1.61955 1.57105 1.04386 0.99927 1.22299 0.98816 0.95946 0.94027 1.20366 0.91603 0.85948 0.98838 1.20953 1.15492 1.00453 1.17348 0.90203 1.24855 0.96696 0.96759 0.94898 1.69882 1.40940 1.12638 1.30446 0.86908 0.83518 0.78866 0.80700 1.20428 1.21038 1.19357 0.92403 0.90642 0.90970 0.74578 0.79620 0.81882 0.81784 0.93183 0.89553 0.96269 0.93933 0.99761 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.18 8.33 37.16 0.31 -1.87 16 2 C 0.07 0.91 2.70 -68.86 -0.19 0.72 16 3 H 0.10 1.10 7.90 -51.93 -0.41 0.69 16 4 C 0.52 7.36 6.74 -10.98 -0.07 7.28 16 5 O -0.46 -8.54 11.46 5.55 0.06 -8.48 16 6 N -0.67 -6.94 5.16 -9.83 -0.05 -6.99 16 7 C 0.23 2.46 6.44 -83.64 -0.54 1.92 16 8 C -0.13 -1.51 8.79 -39.40 -0.35 -1.86 16 9 C -0.02 -0.23 9.55 -39.61 -0.38 -0.61 16 10 C -0.07 -0.73 6.85 -79.91 -0.55 -1.27 16 11 N 0.04 0.45 4.45 33.98 0.15 0.60 16 12 O -0.17 -2.16 18.44 -29.46 -0.54 -2.70 16 13 O -0.16 -2.15 18.44 -29.46 -0.54 -2.70 16 14 C -0.02 -0.21 9.33 -39.58 -0.37 -0.58 16 15 C -0.08 -0.77 6.34 -39.32 -0.25 -1.02 16 16 Cl -0.04 -0.28 27.81 -51.86 -1.44 -1.73 16 17 N -0.51 -9.62 4.40 -237.73 -1.05 -10.67 16 18 C 0.04 0.61 9.10 60.06 0.55 1.16 16 19 C 0.16 3.60 2.33 -4.98 -0.01 3.59 16 20 C -0.50 -13.97 9.09 -34.44 -0.31 -14.28 16 21 H 0.08 2.42 7.34 -52.49 -0.39 2.03 16 22 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 23 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 24 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 28 H 0.06 0.47 7.92 -51.93 -0.41 0.06 16 29 H 0.07 0.85 7.00 -51.93 -0.36 0.49 16 30 H 0.07 1.03 6.53 -51.93 -0.34 0.69 16 31 H 0.42 3.07 7.57 -40.82 -0.31 2.76 16 32 H 0.19 2.59 5.58 -52.48 -0.29 2.30 16 33 H 0.16 1.58 7.60 -52.49 -0.40 1.18 16 34 H 0.16 1.27 7.60 -52.49 -0.40 0.87 16 35 H 0.05 0.67 7.98 -51.93 -0.41 0.25 16 36 H 0.09 1.66 6.89 -51.93 -0.36 1.30 16 37 H 0.02 0.29 7.03 -51.93 -0.36 -0.07 16 38 H 0.04 1.03 5.08 -51.93 -0.26 0.76 16 39 H -0.02 -0.34 6.26 -51.93 -0.33 -0.66 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 350.01 15.07 5.27 5.27 Total: -1.00 -32.61 350.01 -8.49 -41.10 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -4.20 Total: 1.25 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -2.26 Total: -4.93 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -0.17 Total: -43.57 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -1.02 Total: -13.88 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.44 Total: -1.73 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.61 -8.49 -41.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636692.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.094 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.88 seconds