Wall clock time and date at job start Tue Mar 31 2020 23:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47502 * 2 1 4 4 C 1.50705 * 109.46972 * 239.99796 * 2 1 3 5 5 O 1.21290 * 119.99829 * 245.72097 * 4 2 1 6 6 N 1.34769 * 119.99779 * 65.71999 * 4 2 1 7 7 C 1.39982 * 120.00041 * 175.90080 * 6 4 2 8 8 C 1.38853 * 120.07259 * 34.45253 * 7 6 4 9 9 C 1.38121 * 119.94017 * 179.77102 * 8 7 6 10 10 N 1.48012 * 119.95414 * 180.23584 * 9 8 7 11 11 O 1.21802 * 119.99754 * 180.25396 * 10 9 8 12 12 O 1.21800 * 120.00126 * 0.24653 * 10 9 8 13 13 C 1.38303 * 120.08849 * 0.48710 * 9 8 7 14 14 C 1.38255 * 120.15201 * 359.76627 * 13 9 8 15 15 C 1.38226 * 120.05593 * 0.02562 * 14 13 9 16 16 Cl 1.73603 * 120.04618 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.46631 * 120.00267 * 2 1 3 18 18 C 1.46901 * 110.99849 * 285.23353 * 17 2 1 19 19 C 1.46893 * 111.00442 * 49.19219 * 17 2 1 20 20 C 1.50703 * 109.47264 * 170.00020 * 19 17 2 21 21 H 1.07994 * 120.00186 * 359.97438 * 20 19 17 22 22 C 1.37875 * 119.99773 * 179.72480 * 20 19 17 23 23 N 1.31519 * 119.99603 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00441 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47152 * 89.99804 * 24 22 20 26 26 H 1.48495 * 109.47124 * 209.99977 * 24 22 20 27 27 H 1.48497 * 109.46642 * 330.00209 * 24 22 20 28 28 H 1.09003 * 109.47208 * 300.00422 * 1 2 3 29 29 H 1.08998 * 109.46946 * 59.99959 * 1 2 3 30 30 H 1.08995 * 109.47502 * 180.02562 * 1 2 3 31 31 H 0.96997 * 120.00730 * 355.89264 * 6 4 2 32 32 H 1.07998 * 120.03269 * 0.02562 * 8 7 6 33 33 H 1.08008 * 119.91986 * 179.74785 * 13 9 8 34 34 H 1.07997 * 119.96682 * 179.97438 * 14 13 9 35 35 H 1.09006 * 109.47146 * 189.04177 * 18 17 2 36 36 H 1.08998 * 109.47555 * 309.04003 * 18 17 2 37 37 H 1.08997 * 109.46692 * 69.04410 * 18 17 2 38 38 H 1.09007 * 109.47027 * 49.99894 * 19 17 2 39 39 H 1.08998 * 109.47422 * 290.00073 * 19 17 2 40 40 H 0.97003 * 119.99381 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.6417 -1.7536 -1.1222 6 7 1.8044 -0.1868 -2.4512 7 6 2.3440 -0.8002 -3.5878 8 6 2.4668 -2.1823 -3.6405 9 6 2.9952 -2.7851 -4.7653 10 7 3.1215 -4.2587 -4.8238 11 8 3.5916 -4.7907 -5.8135 12 8 2.7554 -4.9391 -3.8823 13 6 3.4112 -2.0133 -5.8349 14 6 3.2955 -0.6365 -5.7844 15 6 2.7636 -0.0271 -4.6635 16 17 2.6190 1.7017 -4.6001 17 7 2.0196 -0.6926 1.1994 18 6 1.8553 0.1451 2.3949 19 6 1.3501 -1.9890 1.3690 20 6 2.0415 -2.7734 2.4542 21 1 2.8934 -2.3512 2.9665 22 6 1.5834 -4.0279 2.7967 23 7 2.1871 -4.7126 3.7434 24 14 0.1051 -4.7551 1.9160 25 1 0.5633 -5.5188 0.7277 26 1 -0.6227 -5.6636 2.8379 27 1 -0.8001 -3.6608 1.4823 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.2665 0.6152 -2.5422 32 1 2.1458 -2.7857 -2.8043 33 1 3.8277 -2.4872 -6.7115 34 1 3.6216 -0.0367 -6.6212 35 1 2.3674 -0.3196 3.2375 36 1 2.2819 1.1309 2.2094 37 1 0.7946 0.2457 2.6251 38 1 1.3949 -2.5462 0.4331 39 1 0.3084 -1.8266 1.6456 40 1 1.8645 -5.5951 3.9846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078646285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:56 Heat of formation + Delta-G solvation = 8.788987 kcal Electronic energy + Delta-G solvation = -27704.883597 eV Core-core repulsion = 23550.086427 eV Total energy + Delta-G solvation = -4154.797170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -42.28745 -41.01050 -39.31224 -37.22770 -36.93409 -36.59122 -35.15576 -32.63680 -32.07685 -31.28061 -29.70909 -27.93462 -26.75044 -25.58001 -24.40678 -23.28703 -22.52747 -21.17564 -19.85361 -19.41049 -18.67330 -17.59460 -17.51206 -17.20014 -17.08418 -16.73916 -16.12502 -15.07408 -14.84016 -14.62667 -14.47237 -14.12406 -14.00312 -13.57819 -13.43267 -13.17657 -12.84712 -12.53722 -12.40465 -12.28548 -12.02846 -11.72445 -11.62864 -11.56694 -11.30152 -11.23099 -11.15056 -11.14502 -10.93157 -10.41791 -10.39988 -9.93830 -9.82729 -9.64632 -9.16338 -8.82670 -8.48314 -7.51162 -5.98573 -3.94766 -0.50171 0.43988 1.02173 1.13482 1.38017 2.43837 2.52532 2.87634 3.34717 3.39615 3.43815 3.91435 4.20390 4.22415 4.34041 4.48322 4.58380 4.62225 5.00113 5.03971 5.08051 5.12544 5.23780 5.34843 5.41898 5.54735 5.59481 5.68042 5.87462 6.06551 6.08848 6.18281 6.26574 6.57922 6.82568 6.90007 7.00185 7.55470 7.59710 7.77504 7.93333 8.04553 8.68438 9.08817 9.63143 11.14819 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.004266 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.040642 B = 6561.883459 C = 8751.797401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.068 3.932 3 H 0.103 0.897 4 C 0.515 3.485 5 O -0.466 6.466 6 N -0.678 5.678 7 C 0.176 3.824 8 C -0.053 4.053 9 C -0.019 4.019 10 N 0.025 4.975 11 O -0.159 6.159 12 O -0.139 6.139 13 C -0.068 4.068 14 C -0.089 4.089 15 C -0.028 4.028 16 Cl -0.038 7.038 17 N -0.511 5.511 18 C 0.039 3.961 19 C 0.159 3.841 20 C -0.504 4.504 21 H 0.079 0.921 22 C 0.071 3.929 23 N -0.901 5.901 24 Si 0.870 3.130 25 H -0.271 1.271 26 H -0.286 1.286 27 H -0.271 1.271 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.415 0.585 32 H 0.182 0.818 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.019 0.981 38 H 0.038 0.962 39 H -0.011 1.011 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 15.910 -20.740 26.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.045 4.045 3 H 0.120 0.880 4 C 0.302 3.698 5 O -0.335 6.335 6 N -0.326 5.326 7 C 0.077 3.923 8 C -0.075 4.075 9 C -0.102 4.102 10 N 0.547 4.453 11 O -0.374 6.374 12 O -0.358 6.358 13 C -0.088 4.088 14 C -0.109 4.109 15 C -0.058 4.058 16 Cl -0.009 7.009 17 N -0.234 5.234 18 C -0.109 4.109 19 C 0.033 3.967 20 C -0.542 4.542 21 H 0.097 0.903 22 C -0.131 4.131 23 N -0.540 5.540 24 Si 0.697 3.303 25 H -0.197 1.197 26 H -0.212 1.212 27 H -0.196 1.196 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.253 0.747 32 H 0.199 0.801 33 H 0.180 0.820 34 H 0.178 0.822 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.038 0.962 38 H 0.056 0.944 39 H 0.007 0.993 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.559 15.760 -20.441 25.858 hybrid contribution -1.842 -0.134 -0.377 1.885 sum -3.401 15.626 -20.818 26.251 Atomic orbital electron populations 1.22468 0.95507 1.03865 1.02583 1.21602 0.93980 0.98218 0.90737 0.87966 1.21285 0.79183 0.85889 0.83486 1.90812 1.36439 1.21059 1.85141 1.43838 1.53314 1.31311 1.04170 1.17121 0.97566 0.90098 0.87481 1.21233 0.95201 0.93572 0.97454 1.21000 1.10069 0.80508 0.98632 1.43507 0.98423 1.03184 1.00204 1.94511 1.45427 1.74498 1.22938 1.94668 1.50406 1.62212 1.28537 1.20935 0.97155 0.92873 0.97859 1.20850 0.99156 0.93389 0.97468 1.21152 1.02086 0.86036 0.96568 1.98410 1.96143 1.07965 1.98341 1.61938 1.57224 1.04355 0.99891 1.22272 0.99111 0.95603 0.93886 1.20357 0.91902 0.85897 0.98554 1.20935 1.15356 1.00540 1.17355 0.90272 1.24839 0.96662 0.96701 0.94880 1.69887 1.40938 1.12623 1.30555 0.86941 0.83522 0.79526 0.80278 1.19658 1.21244 1.19617 0.90790 0.92479 0.90979 0.74691 0.80135 0.81994 0.82209 0.89772 0.93326 0.96215 0.94393 0.99299 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 8.33 37.16 0.31 -2.03 16 2 C 0.07 0.99 2.70 -68.86 -0.19 0.81 16 3 H 0.10 1.17 7.85 -51.93 -0.41 0.76 16 4 C 0.51 7.95 6.69 -10.99 -0.07 7.88 16 5 O -0.47 -9.52 11.95 5.55 0.07 -9.45 16 6 N -0.68 -7.52 5.02 -9.83 -0.05 -7.57 16 7 C 0.18 1.99 6.31 -83.64 -0.53 1.47 16 8 C -0.05 -0.73 8.20 -39.40 -0.32 -1.06 16 9 C -0.02 -0.24 6.85 -79.97 -0.55 -0.78 16 10 N 0.03 0.39 4.45 33.95 0.15 0.54 16 11 O -0.16 -2.34 18.44 -29.46 -0.54 -2.88 16 12 O -0.14 -2.50 18.44 -29.46 -0.54 -3.05 16 13 C -0.07 -0.60 9.55 -39.55 -0.38 -0.98 16 14 C -0.09 -0.62 9.82 -39.58 -0.39 -1.01 16 15 C -0.03 -0.24 6.34 -39.32 -0.25 -0.49 16 16 Cl -0.04 -0.26 27.96 -51.86 -1.45 -1.71 16 17 N -0.51 -10.17 4.40 -237.73 -1.05 -11.22 16 18 C 0.04 0.68 9.02 60.07 0.54 1.22 16 19 C 0.16 3.81 2.33 -4.98 -0.01 3.80 16 20 C -0.50 -14.55 9.13 -34.44 -0.31 -14.87 16 21 H 0.08 2.48 7.34 -52.49 -0.39 2.10 16 22 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 23 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 24 Si 0.87 22.22 27.47 -169.99 -4.67 17.55 16 25 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.27 -6.53 6.53 56.52 0.37 -6.16 16 28 H 0.07 0.90 7.08 -51.93 -0.37 0.53 16 29 H 0.06 0.51 7.85 -51.93 -0.41 0.10 16 30 H 0.07 1.11 6.53 -51.93 -0.34 0.77 16 31 H 0.42 3.24 7.78 -40.82 -0.32 2.92 16 32 H 0.18 3.05 5.74 -52.49 -0.30 2.75 16 33 H 0.16 1.08 7.60 -52.48 -0.40 0.68 16 34 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.08 1.67 7.01 -51.93 -0.36 1.31 16 36 H 0.05 0.68 7.90 -51.93 -0.41 0.27 16 37 H 0.02 0.32 7.13 -51.93 -0.37 -0.05 16 38 H 0.04 0.97 5.49 -51.93 -0.29 0.68 16 39 H -0.01 -0.25 5.83 -51.93 -0.30 -0.55 16 40 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -35.20 351.11 -8.51 -43.71 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.25 Total: 0.30 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -2.25 Total: -4.04 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.17 Total: -45.72 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -1.02 Total: -15.38 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.45 Total: -1.71 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.20 -8.51 -43.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.499 kcal (2) G-P(sol) polarization free energy of solvation -35.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds