Wall clock time and date at job start Tue Mar 31 2020 23:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46892 * 109.47006 * 2 1 4 4 C 1.46896 * 111.00168 * 298.65162 * 3 2 1 5 5 C 1.50705 * 109.47530 * 170.91605 * 4 3 2 6 6 H 1.08001 * 119.99711 * 354.98388 * 5 4 3 7 7 C 1.37871 * 120.00440 * 174.98465 * 5 4 3 8 8 N 1.31517 * 120.00173 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00312 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46689 * 90.00203 * 9 7 5 11 11 H 1.48496 * 109.47371 * 210.00436 * 9 7 5 12 12 H 1.48498 * 109.46971 * 330.00546 * 9 7 5 13 13 C 1.46905 * 111.00026 * 174.69948 * 3 2 1 14 14 C 1.50700 * 109.46951 * 293.95331 * 13 3 2 15 15 O 1.21291 * 119.99978 * 0.02562 * 14 13 3 16 16 N 1.34772 * 119.99895 * 180.27384 * 14 13 3 17 17 C 1.39977 * 119.99991 * 174.09160 * 16 14 13 18 18 C 1.38883 * 120.05562 * 334.69889 * 17 16 14 19 19 C 1.38096 * 119.94139 * 179.97438 * 18 17 16 20 20 C 1.38409 * 120.05445 * 359.97438 * 19 18 17 21 21 Cl 1.73597 * 119.93902 * 180.02562 * 20 19 18 22 22 C 1.38359 * 120.11738 * 0.02562 * 20 19 18 23 23 C 1.38133 * 120.05574 * 359.74389 * 22 20 19 24 24 N 1.48022 * 120.02727 * 180.25935 * 23 22 20 25 25 O 1.21795 * 119.99914 * 5.15983 * 24 23 22 26 26 O 1.21799 * 119.99836 * 185.16294 * 24 23 22 27 27 H 1.09008 * 109.46917 * 305.10409 * 1 2 3 28 28 H 1.08997 * 109.47272 * 65.10358 * 1 2 3 29 29 H 1.09001 * 109.47008 * 185.10675 * 1 2 3 30 30 H 1.09000 * 109.46570 * 240.00210 * 2 1 3 31 31 H 1.09002 * 109.47227 * 120.00401 * 2 1 3 32 32 H 1.09004 * 109.47251 * 290.91399 * 4 3 2 33 33 H 1.08999 * 109.47345 * 50.91684 * 4 3 2 34 34 H 0.96996 * 120.00537 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.47260 * 173.95547 * 13 3 2 36 36 H 1.09001 * 109.47028 * 53.95156 * 13 3 2 37 37 H 0.97002 * 120.00408 * 354.09380 * 16 14 13 38 38 H 1.07994 * 120.03191 * 359.97438 * 18 17 16 39 39 H 1.07997 * 119.96737 * 179.97438 * 19 18 17 40 40 H 1.07997 * 119.97029 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5752 2.1005 -1.2035 5 6 1.9014 3.5654 -1.0663 6 1 2.3158 3.9421 -0.1428 7 6 1.6710 4.4246 -2.1196 8 7 1.1660 3.9660 -3.2440 9 14 2.0748 6.2405 -1.9492 10 1 3.4743 6.4793 -2.3846 11 1 1.1501 7.0349 -2.7972 12 1 1.9209 6.6508 -0.5304 13 6 3.4826 1.4261 0.1267 14 6 3.8843 0.9038 1.4820 15 8 3.0355 0.5333 2.2651 16 7 5.1865 0.8532 1.8258 17 6 5.5534 0.4859 3.1258 18 6 4.6687 0.6786 4.1789 19 6 5.0329 0.3149 5.4603 20 6 6.2781 -0.2417 5.6955 21 17 6.7326 -0.6984 7.3075 22 6 7.1613 -0.4347 4.6481 23 6 6.8001 -0.0770 3.3637 24 7 7.7433 -0.2890 2.2427 25 8 8.7994 -0.8640 2.4360 26 8 7.4632 0.1116 1.1271 27 1 -0.3633 0.5910 0.8408 28 1 -0.3634 0.4326 -0.9321 29 1 -0.3633 -1.0236 0.0915 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.0859 1.6948 -2.0768 33 1 0.4987 1.9776 -1.3224 34 1 1.0035 4.5705 -3.9849 35 1 3.8281 2.4541 0.0164 36 1 3.9321 0.8065 -0.6493 37 1 5.8695 1.0712 1.1725 38 1 3.6968 1.1124 3.9958 39 1 4.3454 0.4649 6.2796 40 1 8.1322 -0.8695 4.8342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039897.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:06 Heat of formation + Delta-G solvation = -14.207072 kcal Electronic energy + Delta-G solvation = -27195.917589 eV Core-core repulsion = 23040.123235 eV Total energy + Delta-G solvation = -4155.794353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 8.11 seconds Orbital eigenvalues (eV) -43.58269 -41.91439 -40.22240 -38.39122 -37.89503 -37.65265 -35.94903 -34.71056 -33.24445 -32.31172 -31.21049 -29.63673 -27.84605 -26.98869 -24.87045 -24.38268 -23.81464 -22.19350 -21.29486 -20.49320 -19.97497 -19.03723 -18.83787 -18.55181 -18.47208 -17.13115 -16.94188 -16.73103 -16.40087 -16.11541 -15.72897 -15.54091 -15.14370 -14.91046 -14.51777 -14.19665 -14.14027 -13.65017 -13.51619 -13.39001 -13.07436 -12.89578 -12.84536 -12.66521 -12.56680 -12.50576 -12.47203 -12.37142 -12.15907 -12.05640 -11.74844 -11.63387 -11.30161 -10.95296 -10.74115 -10.55396 -9.60179 -9.06929 -8.18812 -6.28696 -1.43849 -0.44297 0.04872 0.07673 0.84850 1.24853 1.43395 1.44783 1.50928 1.55620 2.03438 2.41538 2.99234 3.14695 3.19751 3.38755 3.47337 3.53589 3.72158 4.05525 4.23177 4.24926 4.37402 4.45573 4.48403 4.54027 4.67137 4.68954 4.84521 4.90337 5.01230 5.07198 5.26066 5.26342 5.30079 5.33794 5.66155 5.92950 6.05757 6.24674 6.32724 6.54907 6.78434 6.86920 7.41230 8.91882 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.002767 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.788326 B =10115.119894 C =10526.721475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.046 3.954 3 N -0.529 5.529 4 C 0.205 3.795 5 C -0.525 4.525 6 H 0.064 0.936 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.964 3.036 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.045 3.955 14 C 0.529 3.471 15 O -0.510 6.510 16 N -0.665 5.665 17 C 0.228 3.772 18 C -0.135 4.135 19 C -0.013 4.013 20 C -0.060 4.060 21 Cl -0.029 7.029 22 C -0.019 4.019 23 C -0.087 4.087 24 N 0.043 4.957 25 O -0.143 6.143 26 O -0.205 6.205 27 H 0.054 0.946 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.017 0.983 31 H 0.083 0.917 32 H -0.029 1.029 33 H 0.020 0.980 34 H 0.264 0.736 35 H 0.117 0.883 36 H 0.070 0.930 37 H 0.432 0.568 38 H 0.169 0.831 39 H 0.185 0.815 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.848 -9.452 19.564 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.082 4.082 3 N -0.254 5.254 4 C 0.080 3.920 5 C -0.563 4.563 6 H 0.082 0.918 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.789 3.211 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.190 1.190 13 C -0.086 4.086 14 C 0.318 3.682 15 O -0.384 6.384 16 N -0.318 5.318 17 C 0.127 3.873 18 C -0.156 4.156 19 C -0.032 4.032 20 C -0.089 4.089 21 Cl 0.001 6.999 22 C -0.039 4.039 23 C -0.175 4.175 24 N 0.556 4.444 25 O -0.365 6.365 26 O -0.405 6.405 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.101 0.899 32 H -0.011 1.011 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.135 0.865 36 H 0.088 0.912 37 H 0.279 0.721 38 H 0.186 0.814 39 H 0.203 0.797 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 10.490 -9.279 20.787 25.065 hybrid contribution 0.998 0.525 -1.820 2.141 sum 11.489 -8.754 18.967 23.840 Atomic orbital electron populations 1.21687 0.94540 1.01815 1.01350 1.22223 0.96989 0.89088 0.99883 1.61822 1.07811 1.14244 1.41504 1.19494 0.95092 0.92848 0.84602 1.21439 1.42173 0.93373 0.99320 0.91760 1.25827 0.95030 1.03534 0.94776 1.70072 1.45399 1.37056 1.04637 0.85466 0.78166 0.79230 0.78278 1.19643 1.21146 1.19048 1.21877 0.91241 1.03687 0.91824 1.21158 0.80924 0.76005 0.90082 1.90594 1.50274 1.45165 1.52384 1.44530 1.10196 1.65758 1.11328 1.17915 0.91149 0.91466 0.86808 1.21592 1.01437 1.02505 0.90040 1.21745 0.94064 0.89899 0.97508 1.20601 0.95292 1.05333 0.87689 1.98424 1.92335 1.90824 1.18358 1.20819 1.01700 0.94084 0.87329 1.20691 0.91984 1.16699 0.88087 1.43541 1.01085 0.97914 1.01873 1.94524 1.11796 1.40147 1.90021 1.94332 1.81127 1.54669 1.10322 0.92728 0.94204 0.90505 0.96448 0.89865 1.01143 0.96215 0.92698 0.86544 0.91200 0.72065 0.81423 0.79744 0.80099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 9.59 71.98 0.69 -4.02 16 2 C 0.05 1.68 5.34 86.31 0.46 2.14 16 3 N -0.53 -22.11 4.28 -905.35 -3.87 -25.99 16 4 C 0.21 10.39 4.54 85.56 0.39 10.78 16 5 C -0.52 -28.15 8.25 25.60 0.21 -27.94 16 6 H 0.06 3.36 7.32 -2.91 -0.02 3.34 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -54.16 13.29 21.45 0.28 -53.88 16 9 Si 0.96 42.58 29.54 68.60 2.03 44.61 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 13 C 0.04 1.59 5.30 85.56 0.45 2.04 16 14 C 0.53 16.25 7.31 87.66 0.64 16.89 16 15 O -0.51 -17.08 11.54 -3.06 -0.04 -17.11 16 16 N -0.66 -17.04 4.96 -303.48 -1.51 -18.54 16 17 C 0.23 5.17 6.41 38.14 0.24 5.41 16 18 C -0.13 -2.65 8.71 22.39 0.20 -2.46 16 19 C -0.01 -0.17 9.82 22.28 0.22 0.05 16 20 C -0.06 -0.80 6.32 22.34 0.14 -0.66 16 21 Cl -0.03 -0.32 28.95 -2.72 -0.08 -0.40 16 22 C -0.02 -0.30 9.33 22.27 0.21 -0.09 16 23 C -0.09 -1.81 6.86 36.49 0.25 -1.56 16 24 N 0.04 1.06 4.45 -46.17 -0.21 0.85 16 25 O -0.14 -3.47 18.46 18.89 0.35 -3.12 16 26 O -0.20 -5.50 15.82 18.89 0.30 -5.20 16 27 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.04 1.51 6.51 -2.39 -0.02 1.49 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 2.92 5.81 -2.39 -0.01 2.90 16 32 H -0.03 -1.60 8.13 -2.38 -0.02 -1.62 16 33 H 0.02 1.08 6.02 -2.39 -0.01 1.07 16 34 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.12 4.29 6.68 -2.38 -0.02 4.27 16 36 H 0.07 2.33 8.12 -2.39 -0.02 2.31 16 37 H 0.43 10.55 5.76 -92.71 -0.53 10.02 16 38 H 0.17 3.85 5.83 -2.91 -0.02 3.84 16 39 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 40 H 0.18 2.15 7.62 -2.91 -0.02 2.13 16 Total: -1.00 -63.54 354.45 2.40 -61.14 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.58 Total: 16.22 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 4.57 Total: 1.42 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -5.30 Total: -97.56 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: 0.61 Total: -25.43 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.40 kcal Total: -63.54 2.40 -61.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039897.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.933 kcal (2) G-P(sol) polarization free energy of solvation -63.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.11 seconds