Wall clock time and date at job start Tue Mar 31 2020 23:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47222 * 2 1 4 4 C 1.46897 * 110.99919 * 291.70160 * 3 2 1 5 5 C 1.50705 * 109.47343 * 298.16024 * 4 3 2 6 6 H 1.08000 * 119.99473 * 4.88698 * 5 4 3 7 7 C 1.37876 * 119.99978 * 184.87765 * 5 4 3 8 8 N 1.31515 * 119.99956 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99896 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47058 * 60.00321 * 9 7 5 11 11 H 1.48498 * 109.47046 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47202 * 300.00254 * 9 7 5 13 13 C 1.46893 * 110.99898 * 55.65805 * 3 2 1 14 14 C 1.50698 * 109.47302 * 66.04767 * 13 3 2 15 15 O 1.21295 * 119.99994 * 359.97438 * 14 13 3 16 16 N 1.34775 * 120.00201 * 180.02562 * 14 13 3 17 17 C 1.39925 * 120.00431 * 185.67665 * 16 14 13 18 18 C 1.38879 * 120.06139 * 34.91167 * 17 16 14 19 19 C 1.38203 * 119.91318 * 179.97438 * 18 17 16 20 20 Cl 1.73607 * 119.97562 * 179.97438 * 19 18 17 21 21 C 1.38419 * 120.04712 * 359.72468 * 19 18 17 22 22 C 1.38243 * 120.12711 * 0.55388 * 21 19 18 23 23 C 1.38143 * 120.08022 * 359.44783 * 22 21 19 24 24 N 1.48022 * 120.01771 * 180.25532 * 23 22 21 25 25 O 1.21799 * 120.00283 * 355.12278 * 24 23 22 26 26 O 1.21808 * 119.99686 * 175.12524 * 24 23 22 27 27 H 1.09005 * 109.46938 * 64.40586 * 1 2 3 28 28 H 1.08996 * 109.47611 * 184.40227 * 1 2 3 29 29 H 1.08998 * 109.46896 * 304.41114 * 1 2 3 30 30 H 1.09005 * 109.47183 * 239.99936 * 2 1 3 31 31 H 1.09002 * 109.46956 * 120.00283 * 2 1 3 32 32 H 1.08993 * 109.47541 * 58.16688 * 4 3 2 33 33 H 1.09000 * 109.46870 * 178.16438 * 4 3 2 34 34 H 0.96999 * 119.99711 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47449 * 306.04120 * 13 3 2 36 36 H 1.09001 * 109.47074 * 186.04335 * 13 3 2 37 37 H 0.96999 * 120.00187 * 5.67229 * 16 14 13 38 38 H 1.08001 * 120.04059 * 359.95764 * 18 17 16 39 39 H 1.07999 * 119.93887 * 180.29668 * 21 19 18 40 40 H 1.07995 * 119.95665 * 179.72072 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7171 2.0503 -1.2742 5 6 2.4184 1.3293 -2.3965 6 1 2.9631 0.4185 -2.1960 7 6 2.3645 1.8323 -3.6791 8 7 1.7014 2.9416 -3.9230 9 14 3.2332 0.9382 -5.0702 10 1 2.6791 -0.4336 -5.1993 11 1 3.0248 1.6783 -6.3407 12 1 4.6867 0.8593 -4.7766 13 6 1.4658 2.1391 1.1323 14 6 1.9977 1.5709 2.4227 15 8 2.7626 0.6298 2.4012 16 7 1.6226 2.1076 3.6007 17 6 2.2059 1.6596 4.7911 18 6 3.5413 1.2788 4.8112 19 6 4.1144 0.8373 5.9887 20 17 5.7835 0.3603 6.0155 21 6 3.3601 0.7801 7.1479 22 6 2.0291 1.1533 7.1287 23 6 1.4508 1.5954 5.9546 24 7 0.0271 2.0000 5.9369 25 8 -0.6583 1.8598 6.9339 26 8 -0.4591 2.4730 4.9252 27 1 -0.3633 0.4440 -0.9269 28 1 -0.3634 -1.0246 0.0789 29 1 -0.3633 0.5808 0.8478 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.6411 2.0322 -1.4471 33 1 2.0614 3.0838 -1.2352 34 1 1.6632 3.2952 -4.8254 35 1 0.3785 2.0630 1.1226 36 1 1.7574 3.1861 1.0490 37 1 0.9484 2.8046 3.6234 38 1 4.1310 1.3274 3.9077 39 1 3.8110 0.4394 8.0682 40 1 1.4419 1.1033 8.0337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081054079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:14 Heat of formation + Delta-G solvation = 4.606020 kcal Electronic energy + Delta-G solvation = -27287.030246 eV Core-core repulsion = 23132.051689 eV Total energy + Delta-G solvation = -4154.978557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.62583 -40.85278 -39.29009 -37.31050 -37.00044 -36.68365 -34.98406 -32.65168 -32.18735 -31.05078 -29.65923 -28.30010 -26.70297 -25.43372 -23.82098 -23.19600 -22.88373 -21.02674 -19.69888 -19.49127 -18.99939 -18.16657 -17.87641 -17.20699 -16.32156 -16.16564 -16.05613 -15.61698 -14.94308 -14.78557 -14.55134 -14.21540 -14.02340 -13.68685 -13.58341 -12.95823 -12.76426 -12.43230 -12.33180 -11.88551 -11.81896 -11.62009 -11.60343 -11.50119 -11.45662 -11.28544 -11.04160 -10.90033 -10.81767 -10.67985 -10.24474 -9.96597 -9.80510 -9.56695 -9.19940 -8.94382 -8.47778 -7.30916 -6.07049 -4.07720 -0.62170 0.38404 0.87606 0.98724 1.39789 2.36066 2.53033 2.82556 3.32430 3.36314 3.39794 3.77206 4.14824 4.21061 4.28723 4.40592 4.68698 4.89663 4.97601 5.03696 5.17719 5.30160 5.39085 5.52960 5.54698 5.60839 5.83295 5.93932 5.99204 6.08942 6.10186 6.43162 6.62293 6.91644 6.98842 7.21627 7.29701 7.32188 7.71365 7.90626 8.02204 8.12432 8.45288 8.98567 9.56207 11.04027 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.002881 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.291076 B = 9717.302663 C =11231.754613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.050 3.950 3 N -0.516 5.516 4 C 0.192 3.808 5 C -0.507 4.507 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.032 3.968 14 C 0.518 3.482 15 O -0.487 6.487 16 N -0.675 5.675 17 C 0.253 3.747 18 C -0.124 4.124 19 C 0.035 3.965 20 Cl -0.034 7.034 21 C -0.136 4.136 22 C -0.022 4.022 23 C -0.085 4.085 24 N 0.042 4.958 25 O -0.151 6.151 26 O -0.175 6.175 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.069 0.931 32 H -0.004 1.004 33 H 0.034 0.966 34 H 0.262 0.738 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.428 0.572 38 H 0.171 0.829 39 H 0.158 0.842 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 -1.740 24.375 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.078 4.078 3 N -0.240 5.240 4 C 0.067 3.933 5 C -0.546 4.546 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.099 4.099 14 C 0.307 3.693 15 O -0.358 6.358 16 N -0.328 5.328 17 C 0.151 3.849 18 C -0.145 4.145 19 C 0.007 3.993 20 Cl -0.004 7.004 21 C -0.157 4.157 22 C -0.042 4.042 23 C -0.173 4.173 24 N 0.557 4.443 25 O -0.369 6.369 26 O -0.383 6.383 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.014 0.986 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.273 0.727 38 H 0.188 0.812 39 H 0.175 0.825 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.438 -2.475 24.050 24.421 hybrid contribution -1.060 0.074 -0.873 1.375 sum 2.378 -2.402 23.177 23.422 Atomic orbital electron populations 1.22421 0.99698 1.01014 1.01715 1.22210 0.91537 0.91055 1.03030 1.62185 1.57379 1.01813 1.02647 1.19803 0.95061 0.94861 0.83546 1.21088 1.32272 1.09693 0.91544 0.91779 1.24957 0.95597 0.95080 0.98815 1.69937 1.42032 1.20623 1.21193 0.86553 0.80211 0.79608 0.81018 1.20252 1.21360 1.20138 1.22033 0.99037 0.99896 0.88939 1.21617 0.80490 0.82535 0.84646 1.90691 1.32968 1.25625 1.86546 1.44579 1.43290 1.41253 1.03720 1.17335 0.90620 0.92046 0.84879 1.21199 0.92369 1.01561 0.99400 1.21139 0.87537 0.96222 0.94409 1.98438 1.13922 1.89355 1.98704 1.21005 0.92598 1.03617 0.98457 1.20805 0.94678 0.92122 0.96586 1.21024 0.81867 1.16740 0.97659 1.43360 1.02665 0.98058 1.00171 1.94542 1.59475 1.58381 1.24532 1.94399 1.75171 1.46104 1.22600 0.91601 0.93200 0.93859 0.89507 0.91256 0.98638 0.94794 0.92820 0.91167 0.87636 0.72749 0.81199 0.82482 0.81748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.34 9.25 37.16 0.34 -3.00 16 2 C 0.05 0.98 5.50 -3.83 -0.02 0.96 16 3 N -0.52 -10.73 4.47 -237.52 -1.06 -11.79 16 4 C 0.19 4.73 4.54 -4.97 -0.02 4.70 16 5 C -0.51 -13.86 8.49 -34.44 -0.29 -14.15 16 6 H 0.06 1.75 6.67 -52.49 -0.35 1.40 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -25.97 13.29 55.43 0.74 -25.23 16 9 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.03 0.53 5.13 -4.98 -0.03 0.50 16 14 C 0.52 7.81 7.30 -10.99 -0.08 7.73 16 15 O -0.49 -8.61 12.12 5.54 0.07 -8.54 16 16 N -0.68 -8.21 4.69 -9.87 -0.05 -8.26 16 17 C 0.25 2.88 6.23 -83.70 -0.52 2.36 16 18 C -0.12 -1.36 8.43 -39.36 -0.33 -1.69 16 19 C 0.04 0.31 6.32 -39.53 -0.25 0.06 16 20 Cl -0.03 -0.28 28.95 -51.86 -1.50 -1.79 16 21 C -0.14 -0.90 9.83 -39.51 -0.39 -1.29 16 22 C -0.02 -0.17 9.55 -39.61 -0.38 -0.54 16 23 C -0.09 -0.88 6.86 -79.75 -0.55 -1.43 16 24 N 0.04 0.50 4.45 34.06 0.15 0.65 16 25 O -0.15 -1.83 18.46 -29.46 -0.54 -2.37 16 26 O -0.17 -2.22 15.95 -29.46 -0.47 -2.69 16 27 H 0.06 1.28 6.79 -51.93 -0.35 0.93 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.70 5.96 -51.93 -0.31 0.39 16 30 H 0.09 1.88 6.28 -51.93 -0.33 1.56 16 31 H 0.07 1.35 5.97 -51.93 -0.31 1.04 16 32 H 0.00 -0.10 6.57 -51.93 -0.34 -0.45 16 33 H 0.03 0.89 8.02 -51.93 -0.42 0.47 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.07 1.07 5.80 -51.93 -0.30 0.77 16 36 H 0.11 1.57 7.99 -51.93 -0.41 1.15 16 37 H 0.43 4.60 6.25 -40.82 -0.26 4.34 16 38 H 0.17 2.13 6.55 -52.49 -0.34 1.79 16 39 H 0.16 0.58 8.06 -52.49 -0.42 0.15 16 40 H 0.17 0.84 7.62 -52.49 -0.40 0.44 16 LS Contribution 351.10 15.07 5.29 5.29 Total: -1.00 -30.93 351.10 -9.11 -40.04 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.10 Total: 2.62 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.61 Total: -4.29 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.22 Total: -44.64 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.95 Total: -13.61 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.50 Total: -1.79 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.93 -9.11 -40.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081054079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.647 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds