Wall clock time and date at job start Tue Mar 31 2020 23:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47222 * 2 1 4 4 C 1.46897 * 110.99919 * 291.70160 * 3 2 1 5 5 C 1.50705 * 109.47343 * 298.16024 * 4 3 2 6 6 H 1.08000 * 119.99473 * 4.88698 * 5 4 3 7 7 C 1.37876 * 119.99978 * 184.87765 * 5 4 3 8 8 N 1.31515 * 119.99956 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99896 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47058 * 60.00321 * 9 7 5 11 11 H 1.48498 * 109.47046 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47202 * 300.00254 * 9 7 5 13 13 C 1.46893 * 110.99898 * 55.65805 * 3 2 1 14 14 C 1.50698 * 109.47302 * 66.04767 * 13 3 2 15 15 O 1.21295 * 119.99994 * 359.97438 * 14 13 3 16 16 N 1.34775 * 120.00201 * 180.02562 * 14 13 3 17 17 C 1.39925 * 120.00431 * 185.67665 * 16 14 13 18 18 C 1.38879 * 120.06139 * 34.91167 * 17 16 14 19 19 C 1.38203 * 119.91318 * 179.97438 * 18 17 16 20 20 Cl 1.73607 * 119.97562 * 179.97438 * 19 18 17 21 21 C 1.38419 * 120.04712 * 359.72468 * 19 18 17 22 22 C 1.38243 * 120.12711 * 0.55388 * 21 19 18 23 23 C 1.38143 * 120.08022 * 359.44783 * 22 21 19 24 24 N 1.48022 * 120.01771 * 180.25532 * 23 22 21 25 25 O 1.21799 * 120.00283 * 355.12278 * 24 23 22 26 26 O 1.21808 * 119.99686 * 175.12524 * 24 23 22 27 27 H 1.09005 * 109.46938 * 64.40586 * 1 2 3 28 28 H 1.08996 * 109.47611 * 184.40227 * 1 2 3 29 29 H 1.08998 * 109.46896 * 304.41114 * 1 2 3 30 30 H 1.09005 * 109.47183 * 239.99936 * 2 1 3 31 31 H 1.09002 * 109.46956 * 120.00283 * 2 1 3 32 32 H 1.08993 * 109.47541 * 58.16688 * 4 3 2 33 33 H 1.09000 * 109.46870 * 178.16438 * 4 3 2 34 34 H 0.96999 * 119.99711 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47449 * 306.04120 * 13 3 2 36 36 H 1.09001 * 109.47074 * 186.04335 * 13 3 2 37 37 H 0.96999 * 120.00187 * 5.67229 * 16 14 13 38 38 H 1.08001 * 120.04059 * 359.95764 * 18 17 16 39 39 H 1.07999 * 119.93887 * 180.29668 * 21 19 18 40 40 H 1.07995 * 119.95665 * 179.72072 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7171 2.0503 -1.2742 5 6 2.4184 1.3293 -2.3965 6 1 2.9631 0.4185 -2.1960 7 6 2.3645 1.8323 -3.6791 8 7 1.7014 2.9416 -3.9230 9 14 3.2332 0.9382 -5.0702 10 1 2.6791 -0.4336 -5.1993 11 1 3.0248 1.6783 -6.3407 12 1 4.6867 0.8593 -4.7766 13 6 1.4658 2.1391 1.1323 14 6 1.9977 1.5709 2.4227 15 8 2.7626 0.6298 2.4012 16 7 1.6226 2.1076 3.6007 17 6 2.2059 1.6596 4.7911 18 6 3.5413 1.2788 4.8112 19 6 4.1144 0.8373 5.9887 20 17 5.7835 0.3603 6.0155 21 6 3.3601 0.7801 7.1479 22 6 2.0291 1.1533 7.1287 23 6 1.4508 1.5954 5.9546 24 7 0.0271 2.0000 5.9369 25 8 -0.6583 1.8598 6.9339 26 8 -0.4591 2.4730 4.9252 27 1 -0.3633 0.4440 -0.9269 28 1 -0.3634 -1.0246 0.0789 29 1 -0.3633 0.5808 0.8478 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.6411 2.0322 -1.4471 33 1 2.0614 3.0838 -1.2352 34 1 1.6632 3.2952 -4.8254 35 1 0.3785 2.0630 1.1226 36 1 1.7574 3.1861 1.0490 37 1 0.9484 2.8046 3.6234 38 1 4.1310 1.3274 3.9077 39 1 3.8110 0.4394 8.0682 40 1 1.4419 1.1033 8.0337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081054079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:13 Heat of formation + Delta-G solvation = -14.339693 kcal Electronic energy + Delta-G solvation = -27287.851793 eV Core-core repulsion = 23132.051689 eV Total energy + Delta-G solvation = -4155.800104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.50565 -41.87698 -40.27555 -38.50201 -37.84958 -37.80913 -35.99805 -34.72458 -32.96059 -32.03288 -31.14165 -29.91894 -27.68382 -26.95897 -24.99866 -24.71383 -23.76434 -22.28215 -21.07559 -20.42007 -19.90590 -19.03997 -18.76836 -18.49224 -18.18960 -17.33509 -16.94696 -16.82119 -16.46948 -16.10964 -15.78114 -15.39883 -15.16681 -14.94610 -14.50934 -14.26302 -14.20374 -13.51627 -13.46205 -13.24414 -13.17085 -12.88287 -12.80223 -12.74052 -12.68087 -12.54408 -12.41809 -12.38487 -12.26561 -11.94353 -11.80648 -11.63676 -11.36677 -10.89741 -10.59518 -10.49584 -9.80815 -8.98126 -8.19710 -6.27366 -1.45293 -0.34005 0.03633 0.16215 0.69080 1.27914 1.41466 1.43814 1.50592 1.54568 2.01479 2.41340 3.01592 3.12529 3.26305 3.42067 3.47823 3.59603 3.75929 4.13955 4.18588 4.21038 4.32925 4.38373 4.46764 4.47280 4.60791 4.76421 4.81506 4.89030 4.98202 5.04233 5.21780 5.26401 5.34057 5.44069 5.64711 5.94799 6.06481 6.29761 6.38280 6.56319 6.81820 6.87584 7.40983 8.91158 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.002881 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.291076 B = 9717.302663 C =11231.754613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.055 3.945 3 N -0.530 5.530 4 C 0.208 3.792 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.962 3.038 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.272 1.272 13 C 0.030 3.970 14 C 0.528 3.472 15 O -0.518 6.518 16 N -0.666 5.666 17 C 0.230 3.770 18 C -0.137 4.137 19 C 0.036 3.964 20 Cl -0.030 7.030 21 C -0.113 4.113 22 C -0.009 4.009 23 C -0.089 4.089 24 N 0.041 4.959 25 O -0.143 6.143 26 O -0.205 6.205 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.075 0.925 32 H -0.020 1.020 33 H 0.013 0.987 34 H 0.264 0.736 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.434 0.566 38 H 0.149 0.851 39 H 0.197 0.803 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.988 -2.699 26.935 27.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.073 4.073 3 N -0.254 5.254 4 C 0.083 3.917 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.787 3.213 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.197 1.197 13 C -0.101 4.101 14 C 0.317 3.683 15 O -0.391 6.391 16 N -0.319 5.319 17 C 0.130 3.870 18 C -0.159 4.159 19 C 0.007 3.993 20 Cl 0.000 7.000 21 C -0.133 4.133 22 C -0.028 4.028 23 C -0.177 4.177 24 N 0.554 4.446 25 O -0.365 6.365 26 O -0.406 6.406 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.093 0.907 32 H -0.002 1.002 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.134 0.866 37 H 0.279 0.721 38 H 0.167 0.833 39 H 0.214 0.786 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.771 -3.408 26.610 27.091 hybrid contribution -1.118 0.352 -1.444 1.860 sum 2.653 -3.056 25.166 25.489 Atomic orbital electron populations 1.22303 0.97952 1.02413 1.01146 1.22110 0.92954 0.90286 1.01991 1.61993 1.58569 1.02447 1.02347 1.19425 0.93533 0.93692 0.85099 1.21405 1.32284 1.09708 0.92766 0.92364 1.25773 0.96264 0.95814 1.01274 1.70046 1.43240 1.21938 1.21812 0.85544 0.79092 0.78651 0.77988 1.19469 1.20745 1.19694 1.22076 0.99777 1.00031 0.88232 1.21138 0.80022 0.82118 0.85016 1.90678 1.34423 1.27017 1.87029 1.44237 1.43119 1.41160 1.03395 1.17402 0.91032 0.93754 0.84774 1.21055 0.92268 1.02840 0.99709 1.21277 0.87870 0.95657 0.94446 1.98446 1.13715 1.89210 1.98677 1.21440 0.91818 1.01178 0.98846 1.21255 0.95034 0.90128 0.96401 1.21193 0.80878 1.17336 0.98276 1.43571 1.03259 0.97808 0.99935 1.94517 1.59924 1.57723 1.24346 1.94402 1.75762 1.47521 1.22960 0.93851 0.91159 0.92265 0.91983 0.90654 1.00227 0.96934 0.92678 0.89820 0.86558 0.72069 0.83315 0.78565 0.78678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.31 9.25 71.98 0.67 -5.65 16 2 C 0.05 2.20 5.50 86.30 0.48 2.67 16 3 N -0.53 -22.64 4.47 -905.39 -4.05 -26.69 16 4 C 0.21 10.65 4.54 85.56 0.39 11.03 16 5 C -0.52 -29.35 8.49 25.60 0.22 -29.13 16 6 H 0.06 3.27 6.67 -2.91 -0.02 3.25 16 7 C 0.01 0.40 5.46 84.65 0.46 0.87 16 8 N -0.93 -54.79 13.29 21.45 0.28 -54.51 16 9 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 13 C 0.03 0.99 5.13 85.56 0.44 1.43 16 14 C 0.53 16.10 7.30 87.66 0.64 16.74 16 15 O -0.52 -18.61 12.12 -3.07 -0.04 -18.65 16 16 N -0.67 -16.16 4.69 -303.51 -1.42 -17.59 16 17 C 0.23 5.08 6.23 38.15 0.24 5.32 16 18 C -0.14 -2.93 8.43 22.42 0.19 -2.74 16 19 C 0.04 0.55 6.32 22.30 0.14 0.69 16 20 Cl -0.03 -0.45 28.95 -2.72 -0.08 -0.53 16 21 C -0.11 -1.03 9.83 22.31 0.22 -0.81 16 22 C -0.01 -0.10 9.55 22.25 0.21 0.11 16 23 C -0.09 -1.67 6.86 36.50 0.25 -1.42 16 24 N 0.04 0.91 4.45 -46.16 -0.21 0.70 16 25 O -0.14 -3.14 18.46 18.89 0.35 -2.79 16 26 O -0.21 -5.11 15.95 18.88 0.30 -4.81 16 27 H 0.04 1.71 6.79 -2.38 -0.02 1.70 16 28 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.06 1.87 5.96 -2.39 -0.01 1.85 16 30 H 0.06 2.78 6.28 -2.38 -0.01 2.76 16 31 H 0.08 2.96 5.97 -2.39 -0.01 2.95 16 32 H -0.02 -1.06 6.57 -2.39 -0.02 -1.08 16 33 H 0.01 0.69 8.02 -2.39 -0.02 0.67 16 34 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 35 H 0.08 2.55 5.80 -2.39 -0.01 2.53 16 36 H 0.12 3.54 7.99 -2.39 -0.02 3.52 16 37 H 0.43 9.33 6.25 -92.71 -0.58 8.75 16 38 H 0.15 3.85 6.55 -2.91 -0.02 3.83 16 39 H 0.20 0.32 8.06 -2.91 -0.02 0.30 16 40 H 0.20 1.00 7.62 -2.91 -0.02 0.98 16 Total: -1.00 -68.32 351.10 2.24 -66.08 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.54 Total: 13.34 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 4.54 Total: -0.89 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -5.39 Total: -98.08 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: 0.61 Total: -26.24 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -68.32 2.24 -66.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081054079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.736 kcal (2) G-P(sol) polarization free energy of solvation -68.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds