Wall clock time and date at job start Tue Mar 31 2020 23:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.46497 * 120.00129 * 269.99599 * 3 2 1 5 5 C 1.50709 * 109.47273 * 270.00327 * 4 3 2 6 6 H 1.07999 * 119.99476 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00210 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99914 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00074 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46996 * 90.00193 * 9 7 5 11 11 H 1.48502 * 109.46931 * 210.00078 * 9 7 5 12 12 H 1.48498 * 109.47167 * 330.00145 * 9 7 5 13 13 C 1.34777 * 120.00345 * 90.00092 * 3 2 1 14 14 O 1.21283 * 120.00463 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99675 * 359.72090 * 13 3 2 16 16 N 1.46499 * 109.47257 * 180.27849 * 15 13 3 17 17 C 1.39742 * 120.00153 * 180.02562 * 16 15 13 18 18 C 1.38914 * 120.06394 * 359.97438 * 17 16 15 19 19 C 1.38088 * 119.94127 * 180.02562 * 18 17 16 20 20 C 1.38397 * 120.05913 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 119.94012 * 180.02562 * 20 19 18 22 22 C 1.38363 * 120.12800 * 359.97438 * 20 19 18 23 23 N 1.47998 * 119.97330 * 180.02562 * 22 20 19 24 24 O 1.21796 * 120.00318 * 180.02562 * 23 22 20 25 25 O 1.21800 * 120.00073 * 0.02562 * 23 22 20 26 26 C 1.38130 * 120.05716 * 359.77354 * 22 20 19 27 27 H 1.08997 * 109.46656 * 60.00331 * 1 2 3 28 28 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46999 * 300.00039 * 1 2 3 30 30 H 1.08995 * 109.47592 * 239.99526 * 2 1 3 31 31 H 1.09002 * 109.47093 * 119.99833 * 2 1 3 32 32 H 1.09000 * 109.46889 * 29.99981 * 4 3 2 33 33 H 1.09001 * 109.47460 * 150.00590 * 4 3 2 34 34 H 0.97000 * 120.00447 * 179.97438 * 8 7 5 35 35 H 1.09009 * 109.47352 * 300.27556 * 15 13 3 36 36 H 1.08998 * 109.47585 * 60.27844 * 15 13 3 37 37 H 0.97002 * 119.99778 * 0.02562 * 16 15 13 38 38 H 1.08002 * 120.02776 * 0.02562 * 18 17 16 39 39 H 1.08000 * 119.96788 * 180.02562 * 19 18 17 40 40 H 1.08001 * 120.03260 * 180.27561 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0956 7 6 4.1493 2.3895 -2.8779 8 7 3.3493 3.1257 -3.6180 9 14 5.9137 2.0966 -3.4167 10 1 5.9777 0.8752 -4.2589 11 1 6.3923 3.2638 -4.2001 12 1 6.7737 1.9178 -2.2193 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9859 1.3083 2.4723 16 7 2.2981 2.2077 3.5858 17 6 2.1373 1.7705 4.9033 18 6 1.6810 0.4835 5.1587 19 6 1.5226 0.0543 6.4615 20 6 1.8174 0.9052 7.5124 21 17 1.6177 0.3622 9.1492 22 6 2.2721 2.1876 7.2611 23 7 2.5869 3.0945 8.3875 24 8 2.9867 4.2236 8.1669 25 8 2.4462 2.7117 9.5352 26 6 2.4374 2.6204 5.9598 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0283 33 1 2.0957 3.1410 -1.1384 34 1 3.6753 3.5162 -4.4439 35 1 0.9376 1.0142 2.5258 36 1 2.6158 0.4209 2.5344 37 1 2.6164 3.1067 3.4085 38 1 1.4504 -0.1808 4.3389 39 1 1.1682 -0.9463 6.6606 40 1 2.7965 3.6200 5.7641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088522699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:41 Heat of formation + Delta-G solvation = -25.502907 kcal Electronic energy + Delta-G solvation = -26470.887355 eV Core-core repulsion = 22314.603177 eV Total energy + Delta-G solvation = -4156.284178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 16.64 seconds Orbital eigenvalues (eV) -43.27474 -41.23008 -40.45989 -37.99362 -37.56804 -37.13600 -36.30036 -34.91682 -33.01902 -31.83127 -31.36238 -29.43649 -27.77083 -27.38694 -24.84658 -24.21157 -24.02775 -22.85336 -20.31968 -20.28155 -19.72631 -18.71283 -18.66506 -18.36766 -17.83906 -17.69038 -16.88524 -16.71641 -16.59291 -16.11831 -15.33070 -15.24859 -15.09673 -14.71279 -14.60547 -14.28598 -13.99469 -13.66019 -13.56268 -13.26607 -13.17002 -13.09591 -13.01128 -12.85569 -12.67823 -12.51914 -12.47936 -12.28300 -12.17488 -11.88778 -11.73963 -11.41504 -11.26517 -10.78072 -10.66058 -10.65522 -9.51155 -8.77267 -8.24951 -6.39312 -1.32061 -0.06466 0.23754 0.26814 0.92246 1.35587 1.38465 1.47818 1.68671 1.86135 2.22007 2.33604 2.48843 3.05723 3.25020 3.47024 3.67718 3.70046 3.79648 4.06881 4.23873 4.26092 4.31357 4.42055 4.46134 4.67962 4.77262 4.81843 4.92381 5.01506 5.02860 5.07986 5.20648 5.27535 5.44079 5.54585 5.78402 5.88731 6.02915 6.30776 6.46120 6.66443 6.74631 7.23142 7.37575 8.82074 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.018193 B = 0.002260 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.692313 B =12388.770440 C =13204.356991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.261 3.739 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.263 1.263 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.489 3.511 14 O -0.594 6.594 15 C 0.111 3.889 16 N -0.726 5.726 17 C 0.232 3.768 18 C -0.123 4.123 19 C -0.043 4.043 20 C -0.058 4.058 21 Cl -0.026 7.026 22 C -0.005 4.005 23 N 0.027 4.973 24 O -0.202 6.202 25 O -0.141 6.141 26 C -0.141 4.141 27 H 0.033 0.967 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.024 0.976 33 H -0.004 1.004 34 H 0.266 0.734 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.409 0.591 38 H 0.189 0.811 39 H 0.193 0.807 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.797 -14.290 18.886 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.326 5.326 4 C 0.140 3.860 5 C -0.579 4.579 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.789 3.211 10 H -0.188 1.188 11 H -0.211 1.211 12 H -0.197 1.197 13 C 0.277 3.723 14 O -0.475 6.475 15 C -0.015 4.015 16 N -0.355 5.355 17 C 0.124 3.876 18 C -0.146 4.146 19 C -0.063 4.063 20 C -0.089 4.089 21 Cl 0.003 6.997 22 C -0.090 4.090 23 N 0.542 4.458 24 O -0.408 6.408 25 O -0.363 6.363 26 C -0.165 4.165 27 H 0.052 0.948 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.042 0.958 33 H 0.014 0.986 34 H 0.075 0.925 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.247 0.753 38 H 0.206 0.794 39 H 0.210 0.790 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.799 -14.158 18.053 24.232 hybrid contribution 1.229 1.458 -0.432 1.956 sum -6.569 -12.700 17.621 22.692 Atomic orbital electron populations 1.22189 0.94420 1.03779 1.01812 1.21895 0.95377 0.80787 1.04733 1.48221 1.63109 1.15363 1.05903 1.18722 0.95274 0.91585 0.80446 1.21703 0.97898 1.31914 1.06401 0.92566 1.25829 1.02147 0.94555 0.96612 1.70043 1.37757 1.34218 1.14822 0.85458 0.79269 0.78098 0.78248 1.18822 1.21063 1.19705 1.21129 0.77725 0.86665 0.86804 1.90672 1.48453 1.20749 1.87670 1.21440 1.04981 0.93189 0.81902 1.44677 1.71858 1.17796 1.01165 1.17616 0.93274 0.93106 0.83566 1.21526 1.00509 0.93928 0.98611 1.21308 0.95734 1.00441 0.88771 1.20736 1.06005 0.92154 0.89980 1.98438 1.95326 1.89070 1.16847 1.20565 1.11490 0.90725 0.86213 1.43804 0.97946 1.01392 1.02669 1.94552 1.49276 1.05577 1.91350 1.94567 1.55134 1.79789 1.06806 1.20298 1.05145 1.02533 0.88536 0.94795 0.88328 0.91544 0.90946 0.86843 0.95801 0.98552 0.92467 0.85206 0.85613 0.75348 0.79378 0.78958 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 10.24 71.98 0.74 -2.12 16 2 C 0.09 2.10 5.93 86.38 0.51 2.62 16 3 N -0.60 -21.08 2.46 -826.15 -2.03 -23.11 16 4 C 0.26 12.95 5.16 85.64 0.44 13.39 16 5 C -0.54 -29.20 9.39 25.60 0.24 -28.96 16 6 H 0.06 2.97 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.42 5.46 84.65 0.46 0.89 16 8 N -0.93 -54.38 13.29 21.45 0.28 -54.09 16 9 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 10 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 C 0.49 16.43 7.74 87.66 0.68 17.11 16 14 O -0.59 -26.79 15.25 -3.04 -0.05 -26.83 16 15 C 0.11 2.00 3.95 85.63 0.34 2.34 16 16 N -0.73 -14.53 5.71 -343.09 -1.96 -16.49 16 17 C 0.23 3.78 6.65 38.20 0.25 4.03 16 18 C -0.12 -1.12 9.31 22.40 0.21 -0.91 16 19 C -0.04 -0.40 9.82 22.27 0.22 -0.18 16 20 C -0.06 -0.98 6.32 22.34 0.14 -0.84 16 21 Cl -0.03 -0.46 25.92 -2.72 -0.07 -0.53 16 22 C -0.01 -0.11 6.85 36.38 0.25 0.14 16 23 N 0.03 0.73 4.45 -46.47 -0.21 0.52 16 24 O -0.20 -6.13 18.45 18.89 0.35 -5.78 16 25 O -0.14 -3.91 16.01 18.89 0.30 -3.61 16 26 C -0.14 -2.88 9.40 22.40 0.21 -2.66 16 27 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 0.96 7.20 -2.39 -0.02 0.94 16 30 H 0.07 1.86 8.07 -2.39 -0.02 1.84 16 31 H 0.11 1.46 6.45 -2.39 -0.02 1.44 16 32 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 33 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 34 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 35 H 0.13 1.39 6.97 -2.38 -0.02 1.37 16 36 H 0.13 1.47 7.21 -2.39 -0.02 1.45 16 37 H 0.41 10.39 7.45 -92.71 -0.69 9.70 16 38 H 0.19 0.29 6.73 -2.91 -0.02 0.27 16 39 H 0.19 0.39 8.06 -2.91 -0.02 0.36 16 40 H 0.15 3.25 7.61 -2.91 -0.02 3.23 16 Total: -1.00 -76.94 362.25 3.75 -73.19 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.41 Total: 6.70 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 4.69 Total: 4.84 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -3.91 Total: -93.17 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: 0.60 Total: -36.22 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.07 Total: -0.53 kcal Total: -76.94 3.75 -73.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088522699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.688 kcal (2) G-P(sol) polarization free energy of solvation -76.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.64 seconds