Wall clock time and date at job start Wed Apr 1 2020 00:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81408 * 103.00035 * 2 1 4 4 C 1.53001 * 109.46924 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46792 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47356 * 55.00242 * 5 4 3 7 7 C 1.53002 * 109.47091 * 175.00106 * 5 4 3 8 8 O 1.42902 * 109.46879 * 54.99656 * 7 5 4 9 9 N 1.46498 * 109.47491 * 295.00044 * 5 4 3 10 10 C 1.34774 * 120.00348 * 155.00334 * 9 5 4 11 11 O 1.21549 * 119.99904 * 359.97438 * 10 9 5 12 12 C 1.47867 * 120.00079 * 180.02562 * 10 9 5 13 13 C 1.39669 * 120.09925 * 0.02562 * 12 10 9 14 14 C 1.38043 * 120.03800 * 179.97438 * 13 12 10 15 15 C 1.38176 * 120.24168 * 359.75416 * 14 13 12 16 16 C 1.39179 * 120.20357 * 0.50266 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.76778 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25136 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31631 * 119.99738 * 180.02562 * 20 18 17 22 22 Si 1.86791 * 120.00147 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46962 * 89.99772 * 22 20 18 24 24 H 1.48502 * 109.47274 * 210.00042 * 22 20 18 25 25 H 1.48499 * 109.47299 * 330.00031 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.49916 * 16 15 14 27 27 H 1.08999 * 109.47167 * 59.99804 * 1 2 3 28 28 H 1.08989 * 109.47095 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46733 * 300.00461 * 1 2 3 30 30 H 1.09003 * 109.46955 * 60.00006 * 3 2 1 31 31 H 1.09001 * 109.46731 * 299.99883 * 3 2 1 32 32 H 1.08999 * 109.46853 * 60.00112 * 4 3 2 33 33 H 1.09006 * 109.47253 * 299.99972 * 4 3 2 34 34 H 1.08994 * 109.47353 * 175.00025 * 7 5 4 35 35 H 1.09002 * 109.46894 * 295.00085 * 7 5 4 36 36 H 0.96707 * 113.99604 * 180.02562 * 8 7 5 37 37 H 0.97008 * 119.99747 * 335.00134 * 9 5 4 38 38 H 1.08002 * 119.98588 * 359.96545 * 13 12 10 39 39 H 1.08000 * 119.87868 * 180.02562 * 14 13 12 40 40 H 1.08005 * 119.89464 * 180.25271 * 15 14 13 41 41 H 0.96995 * 120.00040 * 180.02562 * 21 20 18 42 42 H 1.07997 * 120.12436 * 180.27334 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7424 1.9400 -0.0006 5 6 4.0866 3.4307 -0.0013 6 1 3.5943 3.9176 0.8405 7 6 5.6015 3.6045 0.1238 8 8 6.2526 2.8688 -0.9141 9 7 3.6272 4.0375 -1.2531 10 6 3.3501 5.3556 -1.3012 11 8 3.4809 6.0408 -0.3059 12 6 2.8859 5.9678 -2.5646 13 6 2.7333 5.1820 -3.7091 14 6 2.2994 5.7548 -4.8878 15 6 2.0094 7.1048 -4.9400 16 6 2.1629 7.8983 -3.8069 17 16 1.7976 9.6204 -3.8805 18 6 3.4063 10.2609 -4.2062 19 1 4.2316 9.5859 -4.3790 20 6 3.6131 11.6323 -4.2408 21 7 4.8149 12.1107 -4.4846 22 14 2.1861 12.7998 -3.9414 23 1 2.0893 13.1013 -2.4905 24 1 2.4106 14.0596 -4.6949 25 1 0.9237 12.1667 -4.4006 26 6 2.5989 7.3308 -2.6168 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8032 2.2372 0.8900 31 1 1.8032 2.2371 -0.8900 32 1 4.1609 1.4704 -0.8909 33 1 4.1618 1.4702 0.8892 34 1 5.8547 4.6608 0.0342 35 1 5.9310 3.2328 1.0941 36 1 7.2173 2.9332 -0.8960 37 1 3.5225 3.4905 -2.0474 38 1 2.9551 4.1257 -3.6722 39 1 2.1819 5.1447 -5.7712 40 1 1.6663 7.5463 -5.8640 41 1 4.9595 13.0695 -4.5085 42 1 2.7148 7.9431 -1.7348 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119103547.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:41 Heat of formation + Delta-G solvation = -97.083933 kcal Electronic energy + Delta-G solvation = -24181.028124 eV Core-core repulsion = 20569.976881 eV Total energy + Delta-G solvation = -3611.051243 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.41105 -39.50758 -38.26397 -36.25176 -34.72739 -33.81676 -32.11437 -31.88103 -29.95890 -29.44850 -27.93126 -25.38784 -24.55188 -23.76906 -22.08517 -21.58042 -20.10226 -19.01697 -18.48824 -17.43687 -17.25520 -17.16077 -17.05220 -16.62610 -16.24952 -15.96818 -15.57532 -15.44725 -15.14895 -14.99283 -14.75966 -14.69299 -14.35045 -14.24225 -14.06294 -13.85044 -13.61113 -13.18244 -13.11787 -13.08182 -12.78202 -12.68223 -12.29365 -12.24374 -11.98868 -11.86175 -11.25880 -11.22190 -11.01478 -10.96065 -10.84922 -10.29304 -9.94128 -9.76360 -9.15564 -8.68732 -8.54884 -6.29101 -0.22753 0.19244 0.71371 1.05461 1.30465 1.43062 1.63985 1.65241 1.74895 2.02920 2.20722 2.58281 2.83206 2.95225 3.34983 3.55300 3.68386 3.88375 3.91581 3.91729 3.99842 4.29607 4.30391 4.32021 4.36404 4.40067 4.42739 4.52025 4.54763 4.62560 4.73597 4.87294 4.88603 4.89485 5.14061 5.18099 5.28586 5.39071 5.42208 5.67795 5.80940 6.09168 6.43105 6.82567 6.87459 7.09926 8.58779 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.016411 B = 0.002438 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.779944 B =11481.554660 C =12227.633368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.300 6.300 3 C -0.079 4.079 4 C -0.090 4.090 5 C 0.152 3.848 6 H 0.094 0.906 7 C 0.066 3.934 8 O -0.577 6.577 9 N -0.697 5.697 10 C 0.565 3.435 11 O -0.579 6.579 12 C -0.158 4.158 13 C -0.060 4.060 14 C -0.122 4.122 15 C -0.059 4.059 16 C -0.119 4.119 17 S -0.114 6.114 18 C -0.524 4.524 19 H 0.045 0.955 20 C 0.040 3.960 21 N -0.919 5.919 22 Si 0.923 3.077 23 H -0.262 1.262 24 H -0.257 1.257 25 H -0.226 1.226 26 C -0.042 4.042 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.028 0.972 35 H 0.079 0.921 36 H 0.396 0.604 37 H 0.414 0.586 38 H 0.169 0.831 39 H 0.176 0.824 40 H 0.140 0.860 41 H 0.278 0.722 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.639 -26.971 6.698 28.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.075 6.075 3 C -0.227 4.227 4 C -0.129 4.129 5 C 0.046 3.954 6 H 0.112 0.888 7 C -0.013 4.013 8 O -0.385 6.385 9 N -0.350 5.350 10 C 0.353 3.647 11 O -0.459 6.459 12 C -0.163 4.163 13 C -0.078 4.078 14 C -0.141 4.141 15 C -0.079 4.079 16 C -0.230 4.230 17 S 0.119 5.881 18 C -0.670 4.670 19 H 0.064 0.936 20 C -0.165 4.165 21 N -0.557 5.557 22 Si 0.743 3.257 23 H -0.187 1.187 24 H -0.181 1.181 25 H -0.150 1.150 26 C -0.064 4.064 27 H 0.102 0.898 28 H 0.129 0.871 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.046 0.954 35 H 0.097 0.903 36 H 0.245 0.755 37 H 0.252 0.748 38 H 0.187 0.813 39 H 0.193 0.807 40 H 0.158 0.842 41 H 0.087 0.913 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.386 -26.783 7.359 28.501 hybrid contribution 1.015 1.597 -0.055 1.893 sum -5.371 -25.187 7.305 26.769 Atomic orbital electron populations 1.23434 0.91829 1.07399 1.05650 1.86986 1.10106 1.12176 1.98183 1.23412 1.00246 0.93528 1.05562 1.21391 0.92664 0.93290 1.05543 1.21184 0.92998 0.93940 0.87298 0.88777 1.22530 0.92454 0.94660 0.91650 1.86383 1.25595 1.73157 1.53365 1.45745 1.67151 1.07518 1.14584 1.18327 0.76374 0.82593 0.87400 1.90754 1.54878 1.62854 1.37460 1.19963 1.07193 0.93894 0.95239 1.21723 0.94747 1.00603 0.90774 1.21553 0.99224 0.93869 0.99467 1.22083 0.94401 0.94594 0.96860 1.22070 1.05980 0.98381 0.96547 1.82606 1.14096 0.97518 1.93837 1.22372 0.93723 0.95282 1.55671 0.93647 1.25745 0.98770 0.99014 0.92992 1.70034 1.22969 1.14809 1.47908 0.85761 0.80552 0.79446 0.79927 1.18694 1.18147 1.14956 1.21641 0.93401 0.94402 0.96918 0.89794 0.87055 0.89939 0.89883 0.89645 0.89324 0.88516 0.95383 0.90285 0.75464 0.74800 0.81324 0.80674 0.84201 0.91255 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.76 113.37 1.22 0.10 16 2 S -0.30 -4.34 22.38 -56.49 -1.26 -5.60 16 3 C -0.08 -1.03 5.83 71.98 0.42 -0.61 16 4 C -0.09 -1.15 4.48 30.59 0.14 -1.02 16 5 C 0.15 2.64 2.37 44.99 0.11 2.74 16 6 H 0.09 1.86 7.58 -2.39 -0.02 1.84 16 7 C 0.07 1.13 6.85 71.98 0.49 1.63 16 8 O -0.58 -8.92 12.83 -148.98 -1.91 -10.84 16 9 N -0.70 -14.01 4.43 -445.40 -1.97 -15.98 16 10 C 0.56 17.07 7.74 86.79 0.67 17.74 16 11 O -0.58 -22.36 16.00 -3.87 -0.06 -22.42 16 12 C -0.16 -5.02 5.87 -20.11 -0.12 -5.14 16 13 C -0.06 -1.37 9.54 22.57 0.22 -1.15 16 14 C -0.12 -2.89 10.02 22.21 0.22 -2.66 16 15 C -0.06 -1.95 9.79 22.48 0.22 -1.73 16 16 C -0.12 -5.03 5.45 22.65 0.12 -4.91 16 17 S -0.11 -5.70 19.38 -56.49 -1.09 -6.80 16 18 C -0.52 -31.54 10.01 67.94 0.68 -30.86 16 19 H 0.05 3.04 8.02 -2.91 -0.02 3.01 16 20 C 0.04 2.37 5.50 84.84 0.47 2.83 16 21 N -0.92 -57.29 13.97 21.64 0.30 -56.98 16 22 Si 0.92 44.14 27.74 68.60 1.90 46.04 16 23 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 25 H -0.23 -10.26 6.74 99.48 0.67 -9.59 16 26 C -0.04 -1.72 9.34 22.70 0.21 -1.51 16 27 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.11 0.85 8.14 -2.40 -0.02 0.83 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.09 7.75 -2.39 -0.02 1.07 16 32 H 0.09 1.21 7.73 -2.39 -0.02 1.19 16 33 H 0.10 1.11 8.14 -2.38 -0.02 1.10 16 34 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.40 3.34 9.12 -74.05 -0.68 2.66 16 37 H 0.41 6.16 6.63 -92.70 -0.61 5.55 16 38 H 0.17 2.19 6.40 -2.91 -0.02 2.17 16 39 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 41 H 0.28 15.89 8.31 -92.71 -0.77 15.12 16 42 H 0.11 5.00 7.65 -2.91 -0.02 4.98 16 Total: -1.00 -79.38 383.49 0.69 -78.69 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -0.28 Total: 18.45 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 5.07 Total: -24.55 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -1.67 Total: -72.96 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -1.97 Total: -33.26 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.90 Total: 46.04 kcal Atomic # 16 Polarization: -10.04 SS G_CDS: -2.36 Total: -12.40 kcal Total: -79.38 0.69 -78.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119103547.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.396 kcal (2) G-P(sol) polarization free energy of solvation -79.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds