Wall clock time and date at job start Wed Apr 1 2020 00:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81399 * 102.99898 * 2 1 4 4 C 1.53002 * 109.47325 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47172 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47282 * 304.99869 * 5 4 3 7 7 C 1.52998 * 109.47156 * 184.99941 * 5 4 3 8 8 O 1.42900 * 109.47075 * 305.00196 * 7 5 4 9 9 N 1.46493 * 109.47096 * 64.99989 * 5 4 3 10 10 C 1.34783 * 120.00266 * 204.99727 * 9 5 4 11 11 O 1.21554 * 119.99505 * 0.02562 * 10 9 5 12 12 C 1.47857 * 120.00551 * 180.02562 * 10 9 5 13 13 C 1.39674 * 120.09834 * 0.02598 * 12 10 9 14 14 C 1.38046 * 120.04015 * 179.97438 * 13 12 10 15 15 C 1.38176 * 120.23908 * 359.76355 * 14 13 12 16 16 C 1.39179 * 120.20513 * 0.51284 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.73865 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25136 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31616 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47076 * 59.99906 * 22 20 18 24 24 H 1.48496 * 109.46794 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46962 * 299.99839 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.47003 * 16 15 14 27 27 H 1.09003 * 109.47044 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47845 * 300.00348 * 1 2 3 29 29 H 1.09004 * 109.46691 * 60.00441 * 1 2 3 30 30 H 1.09000 * 109.47412 * 59.99548 * 3 2 1 31 31 H 1.08998 * 109.47158 * 300.00080 * 3 2 1 32 32 H 1.09000 * 109.47015 * 59.99585 * 4 3 2 33 33 H 1.09005 * 109.46979 * 300.00055 * 4 3 2 34 34 H 1.09008 * 109.47213 * 64.99781 * 7 5 4 35 35 H 1.09000 * 109.47294 * 184.99678 * 7 5 4 36 36 H 0.96708 * 114.00205 * 180.02562 * 8 7 5 37 37 H 0.97000 * 120.00523 * 25.00430 * 9 5 4 38 38 H 1.08002 * 119.98410 * 359.97438 * 13 12 10 39 39 H 1.07996 * 119.87866 * 180.02562 * 14 13 12 40 40 H 1.08006 * 119.89861 * 180.27092 * 15 14 13 41 41 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.12505 * 180.25503 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9400 0.0006 5 6 4.0864 3.4308 0.0000 6 1 3.5942 3.9170 -0.8423 7 6 5.6013 3.6045 -0.1251 8 8 6.2523 2.8698 0.9135 9 7 3.6268 4.0386 1.2512 10 6 3.3496 5.3567 1.2982 11 8 3.4805 6.0411 0.3022 12 6 2.8863 5.9703 2.5611 13 6 2.7357 5.1860 3.7070 14 6 2.3036 5.7602 4.8857 15 6 2.0231 7.1121 4.9392 16 6 2.1641 7.9021 3.8020 17 16 1.7985 9.6241 3.8740 18 6 0.1278 9.6059 3.3145 19 1 -0.3700 8.6652 3.1310 20 6 -0.5482 10.7999 3.1097 21 7 0.0582 11.9463 3.3339 22 14 -2.3197 10.7804 2.5171 23 1 -3.1628 10.0550 3.5010 24 1 -2.8102 12.1751 2.3773 25 1 -2.3941 10.0958 1.2014 26 6 2.5987 7.3332 2.6120 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8030 2.2372 0.8899 31 1 1.8031 2.2371 -0.8900 32 1 4.1616 1.4703 -0.8891 33 1 4.1608 1.4705 0.8909 34 1 5.9309 3.2320 -1.0951 35 1 5.8545 4.6610 -0.0365 36 1 7.2170 2.9349 0.8960 37 1 3.5221 3.4924 2.0460 38 1 2.9575 4.1296 3.6709 39 1 2.1885 5.1514 5.7702 40 1 1.6896 7.5565 5.8654 41 1 -0.4144 12.7812 3.1903 42 1 2.7130 7.9444 1.7290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119103652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:00 Heat of formation + Delta-G solvation = -74.542717 kcal Electronic energy + Delta-G solvation = -24196.365191 eV Core-core repulsion = 20586.291408 eV Total energy + Delta-G solvation = -3610.073783 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -40.21538 -38.30342 -37.24897 -35.43702 -32.79279 -32.52113 -30.84853 -30.51093 -29.36552 -28.69796 -25.58272 -24.36122 -23.58934 -22.34259 -21.09205 -20.43257 -18.36679 -17.74989 -17.37699 -16.57709 -16.44768 -15.82493 -15.31267 -15.14065 -15.07802 -14.86423 -14.51546 -14.32647 -14.21570 -13.79262 -13.72538 -13.62702 -13.42000 -13.24743 -12.95592 -12.49643 -12.31483 -12.04390 -11.67526 -11.55235 -11.28219 -11.17669 -11.13994 -11.08695 -10.72508 -10.39514 -10.28106 -9.99582 -9.78604 -9.22262 -9.16677 -9.02827 -8.60150 -8.04389 -8.03793 -6.72616 -6.29757 -4.03827 1.14725 1.31108 1.65662 2.22861 2.98992 3.05037 3.19775 3.21786 3.25251 3.45325 3.97645 4.08468 4.24788 4.30690 4.55068 4.58223 4.79179 4.80351 4.84817 5.03314 5.05153 5.06577 5.11592 5.18049 5.23267 5.25115 5.36001 5.46262 5.47368 5.55501 5.72227 5.81669 5.86186 5.98196 6.24314 6.34261 6.57446 6.63132 6.91999 7.17911 7.31411 7.47445 7.55793 8.25001 8.30964 9.15835 10.76948 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011577 B = 0.002677 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.067426 B =10455.786416 C =11537.461410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.268 6.268 3 C -0.086 4.086 4 C -0.104 4.104 5 C 0.155 3.845 6 H 0.103 0.897 7 C 0.064 3.936 8 O -0.569 6.569 9 N -0.721 5.721 10 C 0.565 3.435 11 O -0.537 6.537 12 C -0.155 4.155 13 C -0.088 4.088 14 C -0.141 4.141 15 C -0.055 4.055 16 C -0.107 4.107 17 S -0.035 6.035 18 C -0.520 4.520 19 H 0.075 0.925 20 C 0.074 3.926 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.273 1.273 26 C -0.019 4.019 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.379 0.621 37 H 0.402 0.598 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.131 0.869 41 H 0.270 0.730 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.408 -22.812 -4.483 24.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.042 6.042 3 C -0.234 4.234 4 C -0.143 4.143 5 C 0.048 3.952 6 H 0.121 0.879 7 C -0.016 4.016 8 O -0.374 6.374 9 N -0.374 5.374 10 C 0.354 3.646 11 O -0.415 6.415 12 C -0.160 4.160 13 C -0.108 4.108 14 C -0.161 4.161 15 C -0.076 4.076 16 C -0.218 4.218 17 S 0.200 5.800 18 C -0.668 4.668 19 H 0.093 0.907 20 C -0.135 4.135 21 N -0.505 5.505 22 Si 0.746 3.254 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.198 1.198 26 C -0.040 4.040 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.226 0.774 37 H 0.238 0.762 38 H 0.135 0.865 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.080 0.920 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.152 -22.193 -4.745 24.114 hybrid contribution -2.192 -0.151 -0.544 2.264 sum 5.960 -22.344 -5.290 23.722 Atomic orbital electron populations 1.23382 0.93933 1.06488 1.05180 1.86834 1.07679 1.11546 1.98121 1.23464 1.00340 0.94056 1.05586 1.21510 0.92600 0.95157 1.05040 1.21033 0.92633 0.92932 0.88615 0.87904 1.22631 0.92717 0.96014 0.90202 1.86446 1.23917 1.73617 1.53420 1.45905 1.69001 1.09135 1.13339 1.18445 0.76324 0.81477 0.88381 1.90767 1.52873 1.61705 1.36146 1.19843 1.07716 0.95210 0.93236 1.21149 0.98494 0.98519 0.92601 1.21063 1.01958 0.95401 0.97653 1.21965 0.94268 0.92839 0.98530 1.22847 1.00935 1.03624 0.94355 1.83604 1.17253 0.92738 1.86423 1.22790 0.95909 0.95522 1.52561 0.90708 1.24998 0.99263 0.94514 0.94760 1.69975 1.37308 0.97477 1.45783 0.86183 0.82342 0.77409 0.79421 1.19813 1.20708 1.19818 1.21943 0.91433 0.92599 0.98074 0.88093 0.90325 0.90436 0.89715 0.89865 0.89519 0.89322 0.92717 0.92533 0.77418 0.76240 0.86511 0.85850 0.85079 0.91985 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.76 101.05 1.09 0.26 16 2 S -0.27 -2.37 22.38 -107.50 -2.41 -4.77 16 3 C -0.09 -0.72 5.83 37.16 0.22 -0.50 16 4 C -0.10 -0.82 4.48 -26.73 -0.12 -0.94 16 5 C 0.15 1.49 2.37 -67.94 -0.16 1.32 16 6 H 0.10 1.09 7.58 -51.93 -0.39 0.70 16 7 C 0.06 0.56 6.85 37.16 0.25 0.82 16 8 O -0.57 -4.73 12.83 -35.23 -0.45 -5.18 16 9 N -0.72 -8.10 4.43 -54.75 -0.24 -8.34 16 10 C 0.56 8.79 7.74 -12.32 -0.10 8.69 16 11 O -0.54 -10.13 16.01 5.32 0.09 -10.05 16 12 C -0.16 -2.58 5.87 -105.00 -0.62 -3.20 16 13 C -0.09 -1.21 9.54 -39.12 -0.37 -1.59 16 14 C -0.14 -2.02 10.02 -39.67 -0.40 -2.42 16 15 C -0.05 -0.98 9.79 -39.25 -0.38 -1.36 16 16 C -0.11 -2.28 5.45 -39.00 -0.21 -2.49 16 17 S -0.03 -0.89 21.40 -107.50 -2.30 -3.20 16 18 C -0.52 -14.66 9.46 30.92 0.29 -14.37 16 19 H 0.07 2.08 7.79 -52.49 -0.41 1.67 16 20 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 21 N -0.87 -25.42 13.22 55.49 0.73 -24.69 16 22 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.02 -0.38 9.34 -38.92 -0.36 -0.74 16 27 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.08 0.74 7.75 -51.92 -0.40 0.33 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.76 7.73 -51.93 -0.40 0.35 16 34 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.38 1.71 9.12 45.56 0.42 2.12 16 37 H 0.40 3.83 6.63 -40.82 -0.27 3.56 16 38 H 0.12 1.17 6.40 -52.49 -0.34 0.84 16 39 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.13 2.23 8.06 -52.48 -0.42 1.80 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.14 3.03 7.65 -52.49 -0.40 2.63 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -33.43 386.18 -9.89 -43.32 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.14 Total: 5.28 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -0.97 Total: -14.55 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.49 Total: -33.03 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.37 Total: -15.23 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -4.71 Total: -7.97 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.43 -9.89 -43.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119103652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.224 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds