Wall clock time and date at job start Wed Apr 1 2020 00:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81399 * 102.99898 * 2 1 4 4 C 1.53002 * 109.47325 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47172 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47282 * 304.99869 * 5 4 3 7 7 C 1.52998 * 109.47156 * 184.99941 * 5 4 3 8 8 O 1.42900 * 109.47075 * 305.00196 * 7 5 4 9 9 N 1.46493 * 109.47096 * 64.99989 * 5 4 3 10 10 C 1.34783 * 120.00266 * 204.99727 * 9 5 4 11 11 O 1.21554 * 119.99505 * 0.02562 * 10 9 5 12 12 C 1.47857 * 120.00551 * 180.02562 * 10 9 5 13 13 C 1.39674 * 120.09834 * 0.02598 * 12 10 9 14 14 C 1.38046 * 120.04015 * 179.97438 * 13 12 10 15 15 C 1.38176 * 120.23908 * 359.76355 * 14 13 12 16 16 C 1.39179 * 120.20513 * 0.51284 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.73865 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25136 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31616 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47076 * 59.99906 * 22 20 18 24 24 H 1.48496 * 109.46794 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46962 * 299.99839 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.47003 * 16 15 14 27 27 H 1.09003 * 109.47044 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47845 * 300.00348 * 1 2 3 29 29 H 1.09004 * 109.46691 * 60.00441 * 1 2 3 30 30 H 1.09000 * 109.47412 * 59.99548 * 3 2 1 31 31 H 1.08998 * 109.47158 * 300.00080 * 3 2 1 32 32 H 1.09000 * 109.47015 * 59.99585 * 4 3 2 33 33 H 1.09005 * 109.46979 * 300.00055 * 4 3 2 34 34 H 1.09008 * 109.47213 * 64.99781 * 7 5 4 35 35 H 1.09000 * 109.47294 * 184.99678 * 7 5 4 36 36 H 0.96708 * 114.00205 * 180.02562 * 8 7 5 37 37 H 0.97000 * 120.00523 * 25.00430 * 9 5 4 38 38 H 1.08002 * 119.98410 * 359.97438 * 13 12 10 39 39 H 1.07996 * 119.87866 * 180.02562 * 14 13 12 40 40 H 1.08006 * 119.89861 * 180.27092 * 15 14 13 41 41 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.12505 * 180.25503 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9400 0.0006 5 6 4.0864 3.4308 0.0000 6 1 3.5942 3.9170 -0.8423 7 6 5.6013 3.6045 -0.1251 8 8 6.2523 2.8698 0.9135 9 7 3.6268 4.0386 1.2512 10 6 3.3496 5.3567 1.2982 11 8 3.4805 6.0411 0.3022 12 6 2.8863 5.9703 2.5611 13 6 2.7357 5.1860 3.7070 14 6 2.3036 5.7602 4.8857 15 6 2.0231 7.1121 4.9392 16 6 2.1641 7.9021 3.8020 17 16 1.7985 9.6241 3.8740 18 6 0.1278 9.6059 3.3145 19 1 -0.3700 8.6652 3.1310 20 6 -0.5482 10.7999 3.1097 21 7 0.0582 11.9463 3.3339 22 14 -2.3197 10.7804 2.5171 23 1 -3.1628 10.0550 3.5010 24 1 -2.8102 12.1751 2.3773 25 1 -2.3941 10.0958 1.2014 26 6 2.5987 7.3332 2.6120 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8030 2.2372 0.8899 31 1 1.8031 2.2371 -0.8900 32 1 4.1616 1.4703 -0.8891 33 1 4.1608 1.4705 0.8909 34 1 5.9309 3.2320 -1.0951 35 1 5.8545 4.6610 -0.0365 36 1 7.2170 2.9349 0.8960 37 1 3.5221 3.4924 2.0460 38 1 2.9575 4.1296 3.6709 39 1 2.1885 5.1514 5.7702 40 1 1.6896 7.5565 5.8654 41 1 -0.4144 12.7812 3.1903 42 1 2.7130 7.9444 1.7290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119103652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:58 Heat of formation + Delta-G solvation = -97.541571 kcal Electronic energy + Delta-G solvation = -24197.362496 eV Core-core repulsion = 20586.291408 eV Total energy + Delta-G solvation = -3611.071088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -41.39018 -39.46833 -38.24600 -36.23793 -34.66404 -33.80306 -32.08134 -31.82774 -29.96729 -29.44716 -27.75260 -25.35903 -24.53631 -23.68931 -22.05584 -21.55638 -20.02794 -19.00032 -18.46784 -17.41774 -17.25628 -17.03383 -16.94200 -16.64564 -16.23262 -15.94581 -15.56457 -15.47495 -15.17512 -14.97089 -14.67039 -14.57049 -14.35501 -14.24935 -14.03563 -13.78575 -13.26860 -13.13185 -13.10621 -12.97059 -12.76214 -12.66510 -12.40216 -12.24775 -11.99049 -11.76713 -11.26311 -11.16971 -11.00961 -10.88788 -10.74326 -10.27736 -9.91268 -9.70786 -8.81723 -8.70150 -8.40053 -6.20308 -0.19255 0.24598 0.69907 1.28398 1.37842 1.44083 1.62685 1.63105 1.78997 2.02867 2.23889 2.79246 2.92966 3.36418 3.40991 3.56300 3.69912 3.89622 3.90636 3.94237 4.01943 4.29502 4.29692 4.34464 4.35185 4.41375 4.46335 4.53240 4.55075 4.66143 4.74988 4.87100 4.88171 4.91611 5.13933 5.21205 5.31433 5.37118 5.40198 5.49616 5.85114 6.14470 6.44462 6.86057 7.00034 7.11330 8.66872 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011577 B = 0.002677 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.067426 B =10455.786416 C =11537.461410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.296 6.296 3 C -0.081 4.081 4 C -0.090 4.090 5 C 0.151 3.849 6 H 0.091 0.909 7 C 0.069 3.931 8 O -0.576 6.576 9 N -0.697 5.697 10 C 0.565 3.435 11 O -0.579 6.579 12 C -0.157 4.157 13 C -0.063 4.063 14 C -0.121 4.121 15 C -0.063 4.063 16 C -0.128 4.128 17 S -0.095 6.095 18 C -0.537 4.537 19 H 0.067 0.933 20 C 0.020 3.980 21 N -0.906 5.906 22 Si 0.991 3.009 23 H -0.260 1.260 24 H -0.271 1.271 25 H -0.270 1.270 26 C -0.044 4.044 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.031 0.969 36 H 0.396 0.604 37 H 0.414 0.586 38 H 0.169 0.831 39 H 0.174 0.826 40 H 0.135 0.865 41 H 0.274 0.726 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.952 -26.722 -3.863 27.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.070 6.070 3 C -0.229 4.229 4 C -0.128 4.128 5 C 0.044 3.956 6 H 0.109 0.891 7 C -0.010 4.010 8 O -0.384 6.384 9 N -0.350 5.350 10 C 0.353 3.647 11 O -0.460 6.460 12 C -0.162 4.162 13 C -0.082 4.082 14 C -0.140 4.140 15 C -0.084 4.084 16 C -0.239 4.239 17 S 0.139 5.861 18 C -0.684 4.684 19 H 0.085 0.915 20 C -0.185 4.185 21 N -0.543 5.543 22 Si 0.813 3.187 23 H -0.185 1.185 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.066 4.066 27 H 0.131 0.869 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.246 0.754 37 H 0.252 0.748 38 H 0.186 0.814 39 H 0.192 0.808 40 H 0.153 0.847 41 H 0.083 0.917 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.728 -26.154 -4.103 27.578 hybrid contribution -1.934 0.862 -0.721 2.237 sum 5.794 -25.291 -4.824 26.391 Atomic orbital electron populations 1.23438 0.92054 1.07414 1.05555 1.86912 1.09869 1.12035 1.98171 1.23426 1.00521 0.93603 1.05396 1.21396 0.92378 0.93433 1.05624 1.21189 0.93304 0.93807 0.87258 0.89095 1.22494 0.92090 0.94837 0.91618 1.86390 1.25607 1.73224 1.53226 1.45742 1.67189 1.07507 1.14558 1.18339 0.76307 0.82612 0.87413 1.90754 1.54877 1.63007 1.37387 1.19967 1.07231 0.93857 0.95109 1.21682 0.95264 1.00479 0.90774 1.21538 0.99207 0.93769 0.99511 1.22070 0.94558 0.94476 0.97282 1.22491 1.04277 1.00750 0.96422 1.83491 1.17116 0.98840 1.86632 1.23029 0.97046 0.95556 1.52764 0.91452 1.26008 1.03964 0.93932 0.94628 1.70100 1.39239 0.98151 1.46767 0.85109 0.76660 0.77996 0.78956 1.18480 1.19557 1.19511 1.21621 0.93907 0.94386 0.96677 0.86946 0.89955 0.90054 0.89863 0.90115 0.88459 0.89140 0.90363 0.95015 0.75410 0.74802 0.81393 0.80848 0.84733 0.91673 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 10.76 113.37 1.22 -0.10 16 2 S -0.30 -4.56 22.38 -56.49 -1.26 -5.83 16 3 C -0.08 -1.16 5.83 71.98 0.42 -0.74 16 4 C -0.09 -1.17 4.48 30.59 0.14 -1.04 16 5 C 0.15 2.61 2.37 44.99 0.11 2.72 16 6 H 0.09 1.86 7.58 -2.39 -0.02 1.84 16 7 C 0.07 1.09 6.85 71.98 0.49 1.58 16 8 O -0.58 -7.94 12.83 -148.98 -1.91 -9.85 16 9 N -0.70 -14.07 4.43 -445.40 -1.97 -16.05 16 10 C 0.56 17.23 7.74 86.79 0.67 17.90 16 11 O -0.58 -22.59 16.01 -3.89 -0.06 -22.66 16 12 C -0.16 -5.07 5.87 -20.11 -0.12 -5.18 16 13 C -0.06 -1.48 9.54 22.57 0.22 -1.26 16 14 C -0.12 -2.96 10.02 22.21 0.22 -2.73 16 15 C -0.06 -2.19 9.79 22.48 0.22 -1.97 16 16 C -0.13 -5.67 5.45 22.65 0.12 -5.54 16 17 S -0.10 -5.24 21.40 -56.49 -1.21 -6.45 16 18 C -0.54 -31.57 9.46 67.94 0.64 -30.93 16 19 H 0.07 3.91 7.79 -2.91 -0.02 3.88 16 20 C 0.02 1.15 5.49 84.84 0.47 1.61 16 21 N -0.91 -54.84 13.22 21.64 0.29 -54.56 16 22 Si 0.99 44.55 29.55 68.60 2.03 46.58 16 23 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 26 C -0.04 -1.86 9.34 22.70 0.21 -1.65 16 27 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 1.21 7.75 -2.39 -0.02 1.19 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 1.22 7.73 -2.38 -0.02 1.20 16 34 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.40 2.50 9.12 -74.05 -0.68 1.82 16 37 H 0.41 6.20 6.63 -92.71 -0.61 5.59 16 38 H 0.17 2.24 6.40 -2.91 -0.02 2.22 16 39 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 40 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 41 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.10 4.98 7.65 -2.91 -0.02 4.96 16 Total: -1.00 -78.36 386.18 0.68 -77.68 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -0.24 Total: 18.47 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 5.03 Total: -27.33 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -1.69 Total: -70.60 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -1.97 Total: -32.51 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -9.80 SS G_CDS: -2.47 Total: -12.28 kcal Total: -78.36 0.68 -77.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119103652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.865 kcal (2) G-P(sol) polarization free energy of solvation -78.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds