Wall clock time and date at job start Wed Apr 1 2020 00:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34222 * 116.99926 * 2 1 4 4 O 1.20834 * 120.00114 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00288 * 179.97438 * 3 2 1 6 6 N 1.46491 * 109.47191 * 180.02562 * 5 3 2 7 7 C 1.37102 * 120.00040 * 269.99834 * 6 5 3 8 8 H 1.07999 * 120.00501 * 203.00220 * 7 6 5 9 9 C 1.38957 * 119.99955 * 22.99423 * 7 6 5 10 10 N 1.31411 * 119.99386 * 351.26298 * 9 7 6 11 11 Si 1.86791 * 119.99969 * 171.25773 * 9 7 6 12 12 H 1.48504 * 109.47240 * 90.00226 * 11 9 7 13 13 H 1.48497 * 109.47148 * 209.99903 * 11 9 7 14 14 H 1.48500 * 109.47598 * 330.00516 * 11 9 7 15 15 C 1.34783 * 120.00603 * 90.00012 * 6 5 3 16 16 O 1.21290 * 119.99353 * 5.01540 * 15 6 5 17 17 C 1.50696 * 120.00287 * 185.01498 * 15 6 5 18 18 C 1.52997 * 109.46747 * 174.79534 * 17 15 6 19 19 S 1.81411 * 109.46790 * 180.02562 * 18 17 15 20 20 C 1.76199 * 102.99836 * 180.02562 * 19 18 17 21 21 C 1.38943 * 120.05608 * 0.27592 * 20 19 18 22 22 C 1.38106 * 119.94318 * 180.21057 * 21 20 19 23 23 C 1.38478 * 120.05355 * 359.51411 * 22 21 20 24 24 F 1.35101 * 119.94468 * 180.27402 * 23 22 21 25 25 C 1.38478 * 120.11173 * 0.25478 * 23 22 21 26 26 C 1.38102 * 120.05435 * 359.97438 * 25 23 22 27 27 H 1.09001 * 109.46723 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47502 * 300.00309 * 1 2 3 29 29 H 1.09005 * 109.46724 * 60.00560 * 1 2 3 30 30 H 1.08998 * 109.47035 * 59.99213 * 5 3 2 31 31 H 1.09002 * 109.46664 * 299.99799 * 5 3 2 32 32 H 0.97001 * 119.99250 * 185.00991 * 10 9 7 33 33 H 1.09001 * 109.46822 * 54.79645 * 17 15 6 34 34 H 1.08994 * 109.46993 * 294.79573 * 17 15 6 35 35 H 1.09001 * 109.47369 * 60.00446 * 18 17 15 36 36 H 1.08994 * 109.47406 * 299.99786 * 18 17 15 37 37 H 1.08001 * 120.02782 * 359.97438 * 21 20 19 38 38 H 1.07994 * 119.96667 * 179.78639 * 22 21 20 39 39 H 1.07996 * 119.97484 * 180.02562 * 25 23 22 40 40 H 1.07997 * 120.02716 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1765 3.3374 -1.1860 8 1 4.8149 4.2077 -1.2228 9 6 3.5527 2.8841 -2.3420 10 7 2.9177 1.7336 -2.3378 11 14 3.6166 3.9101 -3.9016 12 1 4.8126 3.5299 -4.6955 13 1 2.3916 3.6667 -4.7048 14 1 3.6967 5.3493 -3.5445 15 6 4.1723 3.3258 1.1685 16 8 4.0891 2.7213 2.2167 17 6 4.4889 4.7991 1.1714 18 6 4.5286 5.3093 2.6132 19 16 4.9089 7.0831 2.6167 20 6 4.9128 7.4843 4.3324 21 6 4.6618 6.4979 5.2783 22 6 4.6610 6.8158 6.6222 23 6 4.9201 8.1143 7.0279 24 9 4.9243 8.4216 8.3434 25 6 5.1753 9.0981 6.0874 26 6 5.1725 8.7862 4.7420 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 3.9565 0.7805 -0.8891 31 1 3.9557 0.7810 0.8909 32 1 2.5447 1.3825 -3.1616 33 1 3.7201 5.3370 0.6166 34 1 5.4583 4.9634 0.7010 35 1 5.2974 4.7715 3.1680 36 1 3.5592 5.1451 3.0836 37 1 4.4636 5.4843 4.9625 38 1 4.4626 6.0502 7.3575 39 1 5.3775 10.1099 6.4062 40 1 5.3720 9.5538 4.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120594272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:28 Heat of formation + Delta-G solvation = -130.532336 kcal Electronic energy + Delta-G solvation = -26510.225291 eV Core-core repulsion = 22331.510441 eV Total energy + Delta-G solvation = -4178.714851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.02337 -39.53398 -38.91960 -38.43580 -35.60031 -34.65841 -32.56377 -31.65461 -31.27910 -30.67319 -28.60569 -26.44983 -25.18887 -23.90774 -22.94284 -22.61443 -20.25899 -19.33292 -18.07665 -17.34444 -17.19698 -16.68172 -16.47950 -16.26246 -15.73683 -15.57165 -15.30064 -14.99100 -14.80866 -14.63794 -14.34307 -14.00486 -13.77230 -13.46083 -13.32763 -12.93170 -12.77634 -12.55530 -12.28038 -11.96539 -11.76587 -11.51401 -11.36096 -11.28824 -11.25867 -10.92797 -10.85873 -10.64391 -10.50402 -10.13260 -9.87040 -9.64001 -9.60162 -9.34965 -9.07890 -8.76144 -8.06626 -7.37341 -6.54198 -4.18072 0.85068 1.01772 1.49573 2.45270 3.01885 3.13449 3.16381 3.32387 3.40523 3.66897 3.90960 4.02830 4.09968 4.51531 4.60313 4.65843 4.92510 5.01524 5.12379 5.23542 5.24820 5.51838 5.66473 5.66748 5.73550 5.76830 5.91327 5.91794 5.97205 6.02367 6.04767 6.17618 6.24318 6.36139 6.45845 6.62312 6.82839 7.22068 7.41497 7.54887 8.13536 8.86798 9.06407 9.22713 9.61914 10.47036 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.002655 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.441577 B =10544.318721 C =11931.009839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.372 6.372 3 C 0.491 3.509 4 O -0.515 6.515 5 C 0.153 3.847 6 N -0.429 5.429 7 C -0.330 4.330 8 H 0.104 0.896 9 C 0.044 3.956 10 N -0.882 5.882 11 Si 0.933 3.067 12 H -0.276 1.276 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.476 3.524 16 O -0.605 6.605 17 C -0.104 4.104 18 C -0.083 4.083 19 S -0.112 6.112 20 C -0.088 4.088 21 C -0.105 4.105 22 C -0.131 4.131 23 C 0.083 3.917 24 F -0.142 7.142 25 C -0.136 4.136 26 C -0.076 4.076 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.139 0.861 31 H 0.078 0.922 32 H 0.274 0.726 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.729 6.724 8.402 11.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.290 6.290 3 C 0.333 3.667 4 O -0.401 6.401 5 C 0.028 3.972 6 N -0.147 5.147 7 C -0.457 4.457 8 H 0.122 0.878 9 C -0.159 4.159 10 N -0.522 5.522 11 Si 0.759 3.241 12 H -0.202 1.202 13 H -0.207 1.207 14 H -0.192 1.192 15 C 0.263 3.737 16 O -0.491 6.491 17 C -0.145 4.145 18 C -0.232 4.232 19 S 0.134 5.866 20 C -0.201 4.201 21 C -0.129 4.129 22 C -0.152 4.152 23 C 0.061 3.939 24 F -0.121 7.121 25 C -0.157 4.157 26 C -0.101 4.101 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.157 0.843 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.484 7.295 7.721 10.909 hybrid contribution -0.654 -0.263 0.272 0.755 sum 1.830 7.033 7.993 10.802 Atomic orbital electron populations 1.22927 0.78871 1.01813 1.01496 1.86463 1.21487 1.35445 1.85587 1.23947 0.92333 0.80436 0.69991 1.90505 1.66740 1.36473 1.46395 1.20665 0.86980 0.85437 1.04135 1.43298 1.57615 1.08469 1.05299 1.19688 1.27889 1.13147 0.85013 0.87834 1.25315 0.94045 0.96259 1.00323 1.69602 1.36067 1.17836 1.28696 0.85819 0.77822 0.80101 0.80322 1.20209 1.20735 1.19165 1.19929 0.81958 0.88306 0.83484 1.90542 1.58385 1.68626 1.31574 1.21071 1.04506 0.95210 0.93721 1.23505 1.06075 0.91479 1.02131 1.85483 1.87647 1.12361 1.01091 1.21926 1.03579 0.96734 0.97880 1.21235 1.00089 0.99627 0.91949 1.21068 1.02072 0.95226 0.96813 1.17675 1.04297 0.94181 0.77757 1.91488 1.94252 1.93749 1.32618 1.21032 1.02810 0.99384 0.92434 1.20624 0.99514 0.94801 0.95113 0.89580 0.93222 0.92773 0.84329 0.90429 0.91449 0.88324 0.89054 0.88695 0.88888 0.84223 0.84441 0.84420 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.56 101.05 1.07 1.81 16 2 O -0.37 -7.94 10.57 -39.24 -0.41 -8.36 16 3 C 0.49 11.91 5.92 36.01 0.21 12.13 16 4 O -0.51 -13.92 15.94 -18.76 -0.30 -14.21 16 5 C 0.15 3.59 5.29 -5.20 -0.03 3.56 16 6 N -0.43 -10.27 2.11 -116.10 -0.25 -10.52 16 7 C -0.33 -7.85 9.00 -14.93 -0.13 -7.99 16 8 H 0.10 2.27 6.72 -52.49 -0.35 1.92 16 9 C 0.04 1.06 5.41 -17.47 -0.09 0.96 16 10 N -0.88 -21.83 8.21 55.50 0.46 -21.38 16 11 Si 0.93 18.96 29.56 -169.99 -5.03 13.93 16 12 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 14 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 15 C 0.48 10.78 7.62 -10.98 -0.08 10.70 16 16 O -0.60 -14.74 15.54 5.55 0.09 -14.65 16 17 C -0.10 -1.90 4.26 -27.89 -0.12 -2.01 16 18 C -0.08 -1.32 3.64 37.16 0.14 -1.18 16 19 S -0.11 -1.55 21.92 -107.50 -2.36 -3.91 16 20 C -0.09 -1.12 6.11 -39.06 -0.24 -1.36 16 21 C -0.10 -1.31 9.36 -39.37 -0.37 -1.68 16 22 C -0.13 -1.49 10.02 -39.54 -0.40 -1.89 16 23 C 0.08 0.94 7.30 -39.40 -0.29 0.65 16 24 F -0.14 -1.66 17.26 2.25 0.04 -1.62 16 25 C -0.14 -1.39 10.02 -39.54 -0.40 -1.78 16 26 C -0.08 -0.83 9.79 -39.37 -0.39 -1.22 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 29 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.14 3.26 6.28 -51.93 -0.33 2.94 16 31 H 0.08 1.73 7.36 -51.93 -0.38 1.34 16 32 H 0.27 6.56 8.32 -40.82 -0.34 6.22 16 33 H 0.10 1.85 8.03 -51.93 -0.42 1.43 16 34 H 0.09 1.53 7.74 -51.93 -0.40 1.13 16 35 H 0.09 1.48 7.63 -51.92 -0.40 1.09 16 36 H 0.09 1.54 7.76 -51.93 -0.40 1.13 16 37 H 0.14 1.75 5.88 -52.49 -0.31 1.44 16 38 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 39 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 40 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -29.32 361.03 -8.10 -37.41 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.66 Total: 7.14 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -1.12 Total: 10.71 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.21 Total: -31.89 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.63 Total: -37.22 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.36 Total: -3.91 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.32 -8.10 -37.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120594272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.120 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds