Wall clock time and date at job start Wed Apr 1 2020 00:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34222 * 116.99926 * 2 1 4 4 O 1.20834 * 120.00114 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00288 * 179.97438 * 3 2 1 6 6 N 1.46491 * 109.47191 * 180.02562 * 5 3 2 7 7 C 1.37102 * 120.00040 * 269.99834 * 6 5 3 8 8 H 1.07999 * 120.00501 * 203.00220 * 7 6 5 9 9 C 1.38957 * 119.99955 * 22.99423 * 7 6 5 10 10 N 1.31411 * 119.99386 * 351.26298 * 9 7 6 11 11 Si 1.86791 * 119.99969 * 171.25773 * 9 7 6 12 12 H 1.48504 * 109.47240 * 90.00226 * 11 9 7 13 13 H 1.48497 * 109.47148 * 209.99903 * 11 9 7 14 14 H 1.48500 * 109.47598 * 330.00516 * 11 9 7 15 15 C 1.34783 * 120.00603 * 90.00012 * 6 5 3 16 16 O 1.21290 * 119.99353 * 5.01540 * 15 6 5 17 17 C 1.50696 * 120.00287 * 185.01498 * 15 6 5 18 18 C 1.52997 * 109.46747 * 174.79534 * 17 15 6 19 19 S 1.81411 * 109.46790 * 180.02562 * 18 17 15 20 20 C 1.76199 * 102.99836 * 180.02562 * 19 18 17 21 21 C 1.38943 * 120.05608 * 0.27592 * 20 19 18 22 22 C 1.38106 * 119.94318 * 180.21057 * 21 20 19 23 23 C 1.38478 * 120.05355 * 359.51411 * 22 21 20 24 24 F 1.35101 * 119.94468 * 180.27402 * 23 22 21 25 25 C 1.38478 * 120.11173 * 0.25478 * 23 22 21 26 26 C 1.38102 * 120.05435 * 359.97438 * 25 23 22 27 27 H 1.09001 * 109.46723 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47502 * 300.00309 * 1 2 3 29 29 H 1.09005 * 109.46724 * 60.00560 * 1 2 3 30 30 H 1.08998 * 109.47035 * 59.99213 * 5 3 2 31 31 H 1.09002 * 109.46664 * 299.99799 * 5 3 2 32 32 H 0.97001 * 119.99250 * 185.00991 * 10 9 7 33 33 H 1.09001 * 109.46822 * 54.79645 * 17 15 6 34 34 H 1.08994 * 109.46993 * 294.79573 * 17 15 6 35 35 H 1.09001 * 109.47369 * 60.00446 * 18 17 15 36 36 H 1.08994 * 109.47406 * 299.99786 * 18 17 15 37 37 H 1.08001 * 120.02782 * 359.97438 * 21 20 19 38 38 H 1.07994 * 119.96667 * 179.78639 * 22 21 20 39 39 H 1.07996 * 119.97484 * 180.02562 * 25 23 22 40 40 H 1.07997 * 120.02716 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1765 3.3374 -1.1860 8 1 4.8149 4.2077 -1.2228 9 6 3.5527 2.8841 -2.3420 10 7 2.9177 1.7336 -2.3378 11 14 3.6166 3.9101 -3.9016 12 1 4.8126 3.5299 -4.6955 13 1 2.3916 3.6667 -4.7048 14 1 3.6967 5.3493 -3.5445 15 6 4.1723 3.3258 1.1685 16 8 4.0891 2.7213 2.2167 17 6 4.4889 4.7991 1.1714 18 6 4.5286 5.3093 2.6132 19 16 4.9089 7.0831 2.6167 20 6 4.9128 7.4843 4.3324 21 6 4.6618 6.4979 5.2783 22 6 4.6610 6.8158 6.6222 23 6 4.9201 8.1143 7.0279 24 9 4.9243 8.4216 8.3434 25 6 5.1753 9.0981 6.0874 26 6 5.1725 8.7862 4.7420 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 3.9565 0.7805 -0.8891 31 1 3.9557 0.7810 0.8909 32 1 2.5447 1.3825 -3.1616 33 1 3.7201 5.3370 0.6166 34 1 5.4583 4.9634 0.7010 35 1 5.2974 4.7715 3.1680 36 1 3.5592 5.1451 3.0836 37 1 4.4636 5.4843 4.9625 38 1 4.4626 6.0502 7.3575 39 1 5.3775 10.1099 6.4062 40 1 5.3720 9.5538 4.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120594272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:27 Heat of formation + Delta-G solvation = -144.073224 kcal Electronic energy + Delta-G solvation = -26510.812468 eV Core-core repulsion = 22331.510441 eV Total energy + Delta-G solvation = -4179.302028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.91745 -41.35727 -40.21602 -39.80066 -37.39241 -36.52011 -34.00890 -33.47416 -32.20290 -31.58241 -30.31832 -27.98471 -26.90814 -25.30087 -23.86306 -23.67035 -22.01002 -21.11783 -19.15052 -18.75378 -18.54046 -18.35037 -18.02458 -17.32230 -17.30337 -16.98299 -16.63807 -16.48510 -16.29791 -16.11805 -15.58343 -15.34357 -14.85950 -14.62833 -14.45962 -14.36676 -14.22627 -14.05160 -13.65562 -13.43478 -13.17710 -13.01801 -12.93841 -12.83793 -12.62662 -12.38309 -12.34805 -12.15064 -12.12347 -11.58345 -11.47847 -11.27285 -10.92869 -10.59324 -10.55985 -10.20920 -9.91391 -8.41192 -8.34623 -6.03275 -0.06204 0.15601 0.38650 1.32803 1.39289 1.48222 1.57992 1.68358 1.82904 2.19396 2.34355 2.43879 2.91787 3.13061 3.22518 3.67408 3.80007 3.84071 3.90829 4.16029 4.19041 4.28672 4.31322 4.34907 4.39349 4.50217 4.63940 4.65649 4.71658 4.78423 4.85111 4.91870 4.97714 5.06087 5.09130 5.14652 5.41126 5.63238 5.74209 5.76492 6.30892 7.04320 7.21277 7.42747 7.81802 8.66471 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.002655 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.441577 B =10544.318721 C =11931.009839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.375 6.375 3 C 0.492 3.508 4 O -0.550 6.550 5 C 0.151 3.849 6 N -0.442 5.442 7 C -0.344 4.344 8 H 0.120 0.880 9 C 0.001 3.999 10 N -0.905 5.905 11 Si 0.995 3.005 12 H -0.265 1.265 13 H -0.294 1.294 14 H -0.259 1.259 15 C 0.464 3.536 16 O -0.628 6.628 17 C -0.094 4.094 18 C -0.078 4.078 19 S -0.099 6.099 20 C -0.105 4.105 21 C -0.117 4.117 22 C -0.136 4.136 23 C 0.076 3.924 24 F -0.144 7.144 25 C -0.128 4.128 26 C -0.074 4.074 27 H 0.133 0.867 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.135 0.865 31 H 0.082 0.918 32 H 0.272 0.728 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.132 0.868 38 H 0.150 0.850 39 H 0.167 0.833 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.211 8.331 8.495 12.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.292 6.292 3 C 0.336 3.664 4 O -0.439 6.439 5 C 0.025 3.975 6 N -0.160 5.160 7 C -0.470 4.470 8 H 0.137 0.863 9 C -0.200 4.200 10 N -0.545 5.545 11 Si 0.819 3.181 12 H -0.190 1.190 13 H -0.220 1.220 14 H -0.183 1.183 15 C 0.254 3.746 16 O -0.516 6.516 17 C -0.135 4.135 18 C -0.227 4.227 19 S 0.146 5.854 20 C -0.218 4.218 21 C -0.141 4.141 22 C -0.156 4.156 23 C 0.054 3.946 24 F -0.123 7.123 25 C -0.148 4.148 26 C -0.098 4.098 27 H 0.151 0.849 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.152 0.848 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.127 0.873 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.149 0.851 38 H 0.168 0.832 39 H 0.184 0.816 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.980 8.885 7.829 12.212 hybrid contribution -0.850 -0.802 0.355 1.221 sum 2.130 8.084 8.184 11.699 Atomic orbital electron populations 1.23285 0.76352 1.04822 1.01102 1.86430 1.23937 1.33850 1.84944 1.24051 0.92631 0.80653 0.69058 1.90470 1.67525 1.37689 1.48223 1.20670 0.86923 0.85886 1.04004 1.43544 1.57800 1.08706 1.05938 1.20096 1.28282 1.13610 0.85056 0.86282 1.26131 0.93746 0.97049 1.03046 1.69700 1.36766 1.18979 1.29047 0.84876 0.77456 0.78969 0.76822 1.18987 1.21978 1.18329 1.20684 0.81145 0.90014 0.82800 1.90510 1.59254 1.69624 1.32255 1.20985 1.05053 0.92018 0.95453 1.23283 1.05433 0.93638 1.00307 1.85304 1.87948 1.09731 1.02380 1.22029 1.04989 0.97755 0.97021 1.21226 1.00918 0.99412 0.92540 1.21216 1.01805 0.95934 0.96652 1.17855 1.04332 0.94461 0.77931 1.91487 1.94270 1.93735 1.32792 1.21329 1.01266 1.00440 0.91762 1.20878 0.98606 0.94359 0.95935 0.84874 0.93077 0.93744 0.84763 0.89997 0.91760 0.88739 0.87328 0.88845 0.90186 0.85051 0.83185 0.81558 0.82445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.27 10.56 113.37 1.20 2.47 16 2 O -0.37 -15.99 10.57 -51.34 -0.54 -16.54 16 3 C 0.49 24.33 5.92 71.24 0.42 24.75 16 4 O -0.55 -30.33 15.94 21.94 0.35 -29.98 16 5 C 0.15 7.22 5.29 85.64 0.45 7.67 16 6 N -0.44 -21.46 2.11 -639.60 -1.35 -22.81 16 7 C -0.34 -16.31 9.00 84.04 0.76 -15.56 16 8 H 0.12 5.11 6.72 -2.91 -0.02 5.09 16 9 C 0.00 0.04 5.41 84.93 0.46 0.50 16 10 N -0.90 -45.21 8.21 21.67 0.18 -45.04 16 11 Si 0.99 38.37 29.56 68.60 2.03 40.40 16 12 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 13 H -0.29 -11.80 7.11 99.48 0.71 -11.09 16 14 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 15 C 0.46 21.36 7.62 87.65 0.67 22.03 16 16 O -0.63 -31.29 15.54 -3.06 -0.05 -31.34 16 17 C -0.09 -3.43 4.26 29.85 0.13 -3.30 16 18 C -0.08 -2.47 3.64 71.98 0.26 -2.21 16 19 S -0.10 -2.63 21.92 -56.49 -1.24 -3.87 16 20 C -0.10 -2.53 6.11 22.61 0.14 -2.39 16 21 C -0.12 -2.86 9.36 22.41 0.21 -2.65 16 22 C -0.14 -2.95 10.02 22.30 0.22 -2.72 16 23 C 0.08 1.58 7.30 22.38 0.16 1.75 16 24 F -0.14 -3.09 17.26 44.97 0.78 -2.31 16 25 C -0.13 -2.25 10.02 22.29 0.22 -2.03 16 26 C -0.07 -1.43 9.79 22.40 0.22 -1.22 16 27 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 29 H 0.04 1.56 8.13 -2.38 -0.02 1.54 16 30 H 0.13 6.50 6.28 -2.39 -0.02 6.48 16 31 H 0.08 3.76 7.36 -2.39 -0.02 3.74 16 32 H 0.27 13.14 8.32 -92.71 -0.77 12.37 16 33 H 0.09 3.53 8.03 -2.39 -0.02 3.51 16 34 H 0.11 3.54 7.74 -2.39 -0.02 3.52 16 35 H 0.09 2.95 7.63 -2.39 -0.02 2.93 16 36 H 0.08 2.71 7.76 -2.39 -0.02 2.69 16 37 H 0.13 3.36 5.88 -2.91 -0.02 3.35 16 38 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -63.04 361.03 6.75 -56.29 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 1.08 Total: 28.08 kcal Atomic # 6 Polarization: 21.58 SS G_CDS: 5.52 Total: 27.10 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -1.17 Total: -67.85 kcal Atomic # 8 Polarization: -77.61 SS G_CDS: -0.24 Total: -77.85 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -1.24 Total: -3.87 kcal Total: -63.04 6.75 -56.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120594272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.781 kcal (2) G-P(sol) polarization free energy of solvation -63.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds