Wall clock time and date at job start Tue Mar 31 2020 23:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81402 * 103.00225 * 2 1 4 4 H 1.08998 * 109.47052 * 54.99900 * 3 2 1 5 5 C 1.52993 * 109.46911 * 294.99863 * 3 2 1 6 6 O 1.42908 * 109.47275 * 295.00095 * 5 3 2 7 7 C 1.52997 * 109.46901 * 174.99704 * 3 2 1 8 8 H 1.08998 * 109.47107 * 60.00230 * 7 3 2 9 9 C 1.53003 * 109.47468 * 299.99846 * 7 3 2 10 10 N 1.46500 * 109.46895 * 180.02562 * 7 3 2 11 11 C 1.34777 * 119.99909 * 205.00248 * 10 7 3 12 12 O 1.21555 * 120.00205 * 359.97438 * 11 10 7 13 13 C 1.47865 * 120.00264 * 179.97438 * 11 10 7 14 14 C 1.39678 * 120.09471 * 359.72133 * 13 11 10 15 15 C 1.38046 * 120.03359 * 179.74414 * 14 13 11 16 16 C 1.38175 * 120.24449 * 0.55985 * 15 14 13 17 17 C 1.39189 * 120.20392 * 359.69337 * 16 15 14 18 18 S 1.76191 * 120.02136 * 180.02562 * 17 16 15 19 19 C 1.76197 * 100.00030 * 265.52757 * 18 17 16 20 20 H 1.07997 * 120.00273 * 5.12049 * 19 18 17 21 21 C 1.38736 * 120.00069 * 185.11910 * 19 18 17 22 22 N 1.31624 * 119.99761 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99888 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47280 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47057 * 120.00278 * 23 21 19 26 26 H 1.48505 * 109.46979 * 239.99975 * 23 21 19 27 27 C 1.38874 * 119.95497 * 0.02562 * 17 16 15 28 28 H 1.09007 * 109.46761 * 60.00100 * 1 2 3 29 29 H 1.08997 * 109.47204 * 300.00089 * 1 2 3 30 30 H 1.08994 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47170 * 54.99854 * 5 3 2 32 32 H 1.09002 * 109.47247 * 175.00301 * 5 3 2 33 33 H 0.96693 * 113.99746 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.47270 * 300.00284 * 9 7 3 35 35 H 1.09001 * 109.46683 * 60.00299 * 9 7 3 36 36 H 1.08999 * 109.47309 * 179.97438 * 9 7 3 37 37 H 0.96998 * 120.00376 * 24.99890 * 10 7 3 38 38 H 1.07993 * 119.98388 * 0.02562 * 14 13 11 39 39 H 1.08000 * 119.87484 * 180.27586 * 15 14 13 40 40 H 1.08001 * 119.90301 * 179.71971 * 16 15 14 41 41 H 0.97001 * 119.99527 * 179.97438 * 22 21 19 42 42 H 1.07994 * 120.12070 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7429 2.4015 -1.3073 6 8 2.4731 1.8449 -2.4024 7 6 3.7370 1.9411 0.1258 8 1 4.2296 1.4544 -0.7160 9 6 4.2163 1.3070 1.4332 10 7 4.0666 3.3685 0.1264 11 6 5.2869 3.7786 -0.2727 12 8 6.1142 2.9640 -0.6327 13 6 5.6194 5.2193 -0.2726 14 6 4.6684 6.1576 0.1351 15 6 4.9819 7.5020 0.1397 16 6 6.2316 7.9266 -0.2692 17 6 7.1852 7.0007 -0.6825 18 16 8.7775 7.5474 -1.2022 19 6 8.5143 7.6465 -2.9416 20 1 7.5297 7.4719 -3.3496 21 6 9.5719 7.9487 -3.7871 22 7 10.7720 8.1610 -3.2899 23 14 9.2926 8.0545 -5.6310 24 1 7.8656 7.7754 -5.9324 25 1 9.6425 9.4168 -6.1073 26 1 10.1481 7.0546 -6.3194 27 6 6.8807 5.6457 -0.6849 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 0.6798 2.2009 -1.4401 32 1 1.9077 3.4784 -1.2707 33 1 2.2212 2.2019 -3.2650 34 1 3.7237 1.7936 2.2750 35 1 3.9710 0.2449 1.4331 36 1 5.2956 1.4303 1.5226 37 1 3.4066 4.0186 0.4140 38 1 3.6888 5.8308 0.4513 39 1 4.2461 8.2249 0.4597 40 1 6.4695 8.9800 -0.2677 41 1 11.5114 8.3719 -3.8811 42 1 7.6187 4.9250 -1.0046 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126765498.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:51 Heat of formation + Delta-G solvation = -64.676968 kcal Electronic energy + Delta-G solvation = -24442.611297 eV Core-core repulsion = 20832.965325 eV Total energy + Delta-G solvation = -3609.645972 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.14960 -38.27717 -37.40715 -35.59532 -32.50821 -32.38340 -30.69627 -30.47251 -29.76748 -28.72141 -25.57198 -24.35878 -23.47810 -22.35534 -21.23001 -20.46908 -18.44023 -17.95995 -17.43412 -16.54900 -16.27230 -15.75440 -15.36369 -15.15696 -15.06392 -14.85204 -14.52381 -14.34154 -13.95271 -13.89594 -13.64105 -13.43330 -13.26815 -12.95121 -12.85720 -12.50134 -12.33761 -12.18178 -11.69042 -11.59923 -11.31993 -11.15267 -11.12022 -11.09935 -10.70798 -10.42595 -10.15276 -9.95276 -9.72664 -9.18844 -9.16757 -9.01696 -8.59916 -8.03619 -7.94563 -6.71289 -6.28703 -4.02539 1.13728 1.18222 1.65269 2.15090 3.05475 3.14979 3.19959 3.23951 3.29229 3.47541 3.79304 4.08495 4.14498 4.25659 4.35575 4.66700 4.71726 4.80770 4.87094 4.93197 5.01963 5.05276 5.08116 5.20373 5.22851 5.29471 5.33765 5.47480 5.61819 5.70253 5.86181 5.88686 6.00919 6.10723 6.23883 6.38018 6.57644 6.61708 6.92417 7.17833 7.31329 7.47971 7.57787 8.31579 8.32906 9.17277 10.78120 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.002509 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.477198 B =11157.589497 C =11782.986696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.211 6.211 3 C -0.071 4.071 4 H 0.101 0.899 5 C 0.082 3.918 6 O -0.551 6.551 7 C 0.169 3.831 8 H 0.108 0.892 9 C -0.166 4.166 10 N -0.726 5.726 11 C 0.567 3.433 12 O -0.527 6.527 13 C -0.153 4.153 14 C -0.091 4.091 15 C -0.141 4.141 16 C -0.056 4.056 17 C -0.106 4.106 18 S -0.035 6.035 19 C -0.518 4.518 20 H 0.076 0.924 21 C 0.073 3.927 22 N -0.870 5.870 23 Si 0.921 3.079 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.278 1.278 27 C -0.018 4.018 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.381 0.619 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.394 0.606 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.269 0.731 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.593 -10.193 8.535 27.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.015 5.985 3 C -0.201 4.201 4 H 0.120 0.880 5 C 0.001 3.999 6 O -0.356 6.356 7 C 0.063 3.937 8 H 0.126 0.874 9 C -0.225 4.225 10 N -0.379 5.379 11 C 0.356 3.644 12 O -0.403 6.403 13 C -0.158 4.158 14 C -0.111 4.111 15 C -0.161 4.161 16 C -0.077 4.077 17 C -0.216 4.216 18 S 0.199 5.801 19 C -0.666 4.666 20 H 0.094 0.906 21 C -0.136 4.136 22 N -0.505 5.505 23 Si 0.747 3.253 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.204 1.204 27 C -0.040 4.040 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.228 0.772 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.229 0.771 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.079 0.921 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.836 -11.731 9.312 25.661 hybrid contribution -2.925 1.543 -2.063 3.898 sum -23.761 -10.188 7.249 26.850 Atomic orbital electron populations 1.23488 0.95306 1.06612 1.04696 1.87027 1.05865 1.07985 1.97644 1.23602 1.00510 0.96411 0.99533 0.88041 1.22163 0.94183 0.96553 0.86952 1.86589 1.64354 1.67660 1.17018 1.20519 0.90628 0.81961 1.00553 0.87369 1.22284 1.02519 1.01402 0.96247 1.45911 1.15403 1.07592 1.69021 1.18353 0.81408 0.88457 0.76221 1.90787 1.47848 1.55044 1.46667 1.19866 0.96465 0.91888 1.07535 1.21102 0.97631 0.93354 0.98972 1.21045 0.97286 0.95266 1.02502 1.21960 0.91864 1.00024 0.93842 1.22861 1.02964 0.94575 1.01237 1.83617 1.03771 1.85098 1.07585 1.22870 0.98302 1.55379 0.90033 0.90592 1.25010 0.94342 0.94521 0.99760 1.69997 1.00088 1.44651 1.35780 0.86063 0.78614 0.77939 0.82663 1.19517 1.20494 1.20405 1.21961 0.94440 0.95765 0.91834 0.90617 0.90592 0.87902 0.93656 0.92650 0.77192 0.92479 0.90577 0.91426 0.77059 0.86740 0.85928 0.85084 0.92100 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.72 10.45 101.05 1.06 0.33 16 2 S -0.21 -1.88 20.10 -107.50 -2.16 -4.04 16 3 C -0.07 -0.58 2.28 -26.74 -0.06 -0.64 16 4 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 5 C 0.08 0.62 6.35 37.15 0.24 0.85 16 6 O -0.55 -5.45 12.53 -35.23 -0.44 -5.89 16 7 C 0.17 1.88 1.96 -67.93 -0.13 1.75 16 8 H 0.11 1.61 6.99 -51.93 -0.36 1.24 16 9 C -0.17 -1.77 9.25 37.16 0.34 -1.42 16 10 N -0.73 -8.31 4.41 -54.74 -0.24 -8.55 16 11 C 0.57 9.17 7.74 -12.32 -0.10 9.07 16 12 O -0.53 -10.65 16.01 5.32 0.09 -10.57 16 13 C -0.15 -2.54 5.87 -104.99 -0.62 -3.16 16 14 C -0.09 -1.21 9.54 -39.11 -0.37 -1.59 16 15 C -0.14 -1.97 10.02 -39.68 -0.40 -2.37 16 16 C -0.06 -0.99 9.79 -39.25 -0.38 -1.37 16 17 C -0.11 -2.25 5.45 -38.99 -0.21 -2.47 16 18 S -0.04 -0.91 21.41 -107.50 -2.30 -3.21 16 19 C -0.52 -14.64 9.46 30.92 0.29 -14.35 16 20 H 0.08 2.13 7.79 -52.49 -0.41 1.72 16 21 C 0.07 2.04 5.49 -17.46 -0.10 1.95 16 22 N -0.87 -25.51 13.22 55.49 0.73 -24.77 16 23 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 C -0.02 -0.37 9.34 -38.92 -0.36 -0.74 16 28 H 0.07 0.37 7.02 -51.92 -0.36 0.01 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.27 6.72 -51.93 -0.35 -0.08 16 32 H 0.06 0.39 7.61 -51.93 -0.40 -0.01 16 33 H 0.38 2.34 9.12 45.56 0.42 2.75 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.78 6.91 -51.93 -0.36 0.42 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.39 3.30 6.43 -40.82 -0.26 3.04 16 38 H 0.11 1.03 6.40 -52.49 -0.34 0.69 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.14 3.10 7.65 -52.49 -0.40 2.70 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -34.59 379.32 -9.36 -43.95 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -4.92 Total: 5.02 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -0.81 Total: -14.15 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.49 Total: -33.32 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.36 Total: -16.45 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -4.46 Total: -7.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.59 -9.36 -43.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126765498.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.730 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds