Wall clock time and date at job start Tue Mar 31 2020 23:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81402 * 103.00225 * 2 1 4 4 H 1.08998 * 109.47052 * 54.99900 * 3 2 1 5 5 C 1.52993 * 109.46911 * 294.99863 * 3 2 1 6 6 O 1.42908 * 109.47275 * 295.00095 * 5 3 2 7 7 C 1.52997 * 109.46901 * 174.99704 * 3 2 1 8 8 H 1.08998 * 109.47107 * 60.00230 * 7 3 2 9 9 C 1.53003 * 109.47468 * 299.99846 * 7 3 2 10 10 N 1.46500 * 109.46895 * 180.02562 * 7 3 2 11 11 C 1.34777 * 119.99909 * 205.00248 * 10 7 3 12 12 O 1.21555 * 120.00205 * 359.97438 * 11 10 7 13 13 C 1.47865 * 120.00264 * 179.97438 * 11 10 7 14 14 C 1.39678 * 120.09471 * 359.72133 * 13 11 10 15 15 C 1.38046 * 120.03359 * 179.74414 * 14 13 11 16 16 C 1.38175 * 120.24449 * 0.55985 * 15 14 13 17 17 C 1.39189 * 120.20392 * 359.69337 * 16 15 14 18 18 S 1.76191 * 120.02136 * 180.02562 * 17 16 15 19 19 C 1.76197 * 100.00030 * 265.52757 * 18 17 16 20 20 H 1.07997 * 120.00273 * 5.12049 * 19 18 17 21 21 C 1.38736 * 120.00069 * 185.11910 * 19 18 17 22 22 N 1.31624 * 119.99761 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99888 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47280 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47057 * 120.00278 * 23 21 19 26 26 H 1.48505 * 109.46979 * 239.99975 * 23 21 19 27 27 C 1.38874 * 119.95497 * 0.02562 * 17 16 15 28 28 H 1.09007 * 109.46761 * 60.00100 * 1 2 3 29 29 H 1.08997 * 109.47204 * 300.00089 * 1 2 3 30 30 H 1.08994 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47170 * 54.99854 * 5 3 2 32 32 H 1.09002 * 109.47247 * 175.00301 * 5 3 2 33 33 H 0.96693 * 113.99746 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.47270 * 300.00284 * 9 7 3 35 35 H 1.09001 * 109.46683 * 60.00299 * 9 7 3 36 36 H 1.08999 * 109.47309 * 179.97438 * 9 7 3 37 37 H 0.96998 * 120.00376 * 24.99890 * 10 7 3 38 38 H 1.07993 * 119.98388 * 0.02562 * 14 13 11 39 39 H 1.08000 * 119.87484 * 180.27586 * 15 14 13 40 40 H 1.08001 * 119.90301 * 179.71971 * 16 15 14 41 41 H 0.97001 * 119.99527 * 179.97438 * 22 21 19 42 42 H 1.07994 * 120.12070 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7429 2.4015 -1.3073 6 8 2.4731 1.8449 -2.4024 7 6 3.7370 1.9411 0.1258 8 1 4.2296 1.4544 -0.7160 9 6 4.2163 1.3070 1.4332 10 7 4.0666 3.3685 0.1264 11 6 5.2869 3.7786 -0.2727 12 8 6.1142 2.9640 -0.6327 13 6 5.6194 5.2193 -0.2726 14 6 4.6684 6.1576 0.1351 15 6 4.9819 7.5020 0.1397 16 6 6.2316 7.9266 -0.2692 17 6 7.1852 7.0007 -0.6825 18 16 8.7775 7.5474 -1.2022 19 6 8.5143 7.6465 -2.9416 20 1 7.5297 7.4719 -3.3496 21 6 9.5719 7.9487 -3.7871 22 7 10.7720 8.1610 -3.2899 23 14 9.2926 8.0545 -5.6310 24 1 7.8656 7.7754 -5.9324 25 1 9.6425 9.4168 -6.1073 26 1 10.1481 7.0546 -6.3194 27 6 6.8807 5.6457 -0.6849 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 0.6798 2.2009 -1.4401 32 1 1.9077 3.4784 -1.2707 33 1 2.2212 2.2019 -3.2650 34 1 3.7237 1.7936 2.2750 35 1 3.9710 0.2449 1.4331 36 1 5.2956 1.4303 1.5226 37 1 3.4066 4.0186 0.4140 38 1 3.6888 5.8308 0.4513 39 1 4.2461 8.2249 0.4597 40 1 6.4695 8.9800 -0.2677 41 1 11.5114 8.3719 -3.8811 42 1 7.6187 4.9250 -1.0046 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126765498.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:17 Heat of formation + Delta-G solvation = -89.872398 kcal Electronic energy + Delta-G solvation = -24443.703852 eV Core-core repulsion = 20832.965325 eV Total energy + Delta-G solvation = -3610.738527 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 36.65 seconds Orbital eigenvalues (eV) -41.37711 -39.43292 -38.36857 -36.55572 -34.66153 -33.51307 -31.97542 -31.58243 -30.55560 -29.25629 -27.75531 -25.47196 -24.36857 -23.66475 -22.21029 -21.66549 -20.06730 -19.08133 -18.66300 -17.50978 -17.23270 -16.94567 -16.85732 -16.62117 -16.20247 -15.88788 -15.63395 -15.53450 -15.27077 -14.85556 -14.61642 -14.44446 -14.16938 -13.99267 -13.80487 -13.58155 -13.32113 -13.20021 -13.10593 -12.99061 -12.92395 -12.65541 -12.39979 -12.37443 -12.14009 -11.74233 -11.27155 -11.14999 -11.01581 -10.75867 -10.67354 -10.30370 -9.91082 -9.70101 -8.81271 -8.58922 -8.40201 -6.20112 -0.17930 0.25671 0.55837 1.28800 1.35783 1.45970 1.63103 1.65686 1.81285 2.11830 2.24218 2.80704 2.92900 3.21906 3.41162 3.46163 3.66672 3.74804 3.94491 4.02465 4.14776 4.29332 4.34665 4.36489 4.37889 4.47284 4.49323 4.49824 4.57419 4.67012 4.72943 4.91824 4.94517 4.99805 5.21994 5.22998 5.31673 5.36347 5.37917 5.51284 5.86733 6.15091 6.44781 6.85341 7.00222 7.15019 8.67157 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.002509 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.477198 B =11157.589497 C =11782.986696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.274 6.274 3 C -0.058 4.058 4 H 0.135 0.865 5 C 0.076 3.924 6 O -0.582 6.582 7 C 0.171 3.829 8 H 0.065 0.935 9 C -0.160 4.160 10 N -0.697 5.697 11 C 0.566 3.434 12 O -0.580 6.580 13 C -0.155 4.155 14 C -0.061 4.061 15 C -0.119 4.119 16 C -0.063 4.063 17 C -0.128 4.128 18 S -0.098 6.098 19 C -0.533 4.533 20 H 0.067 0.933 21 C 0.018 3.982 22 N -0.906 5.906 23 Si 0.993 3.007 24 H -0.265 1.265 25 H -0.264 1.264 26 H -0.273 1.273 27 C -0.046 4.046 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.393 0.607 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.415 0.585 38 H 0.176 0.824 39 H 0.178 0.822 40 H 0.135 0.865 41 H 0.274 0.726 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.887 -9.300 9.354 31.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.048 6.048 3 C -0.187 4.187 4 H 0.153 0.847 5 C -0.003 4.003 6 O -0.390 6.390 7 C 0.065 3.935 8 H 0.084 0.916 9 C -0.219 4.219 10 N -0.350 5.350 11 C 0.354 3.646 12 O -0.461 6.461 13 C -0.160 4.160 14 C -0.080 4.080 15 C -0.138 4.138 16 C -0.084 4.084 17 C -0.240 4.240 18 S 0.137 5.863 19 C -0.681 4.681 20 H 0.085 0.915 21 C -0.187 4.187 22 N -0.543 5.543 23 Si 0.815 3.185 24 H -0.189 1.189 25 H -0.189 1.189 26 H -0.199 1.199 27 C -0.068 4.068 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.242 0.758 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.254 0.746 38 H 0.193 0.807 39 H 0.195 0.805 40 H 0.153 0.847 41 H 0.083 0.917 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -26.189 -10.821 10.158 30.102 hybrid contribution -1.458 1.178 -2.194 2.885 sum -27.647 -9.643 7.964 30.344 Atomic orbital electron populations 1.23523 0.91439 1.07486 1.05998 1.87319 1.10130 1.09566 1.97828 1.23557 0.97798 0.95908 1.01389 0.84688 1.22361 0.95199 0.96947 0.85833 1.86572 1.65415 1.68558 1.18431 1.20424 0.92912 0.80971 0.99145 0.91643 1.22214 1.00753 1.01991 0.96892 1.45610 1.13989 1.08443 1.67008 1.18369 0.82268 0.87901 0.76019 1.90774 1.49847 1.56200 1.49242 1.19934 0.95625 0.93048 1.07368 1.21711 0.98765 0.92277 0.95227 1.21565 0.96056 0.96569 0.99652 1.22085 0.92858 0.99587 0.93858 1.22488 1.01286 0.95586 1.04595 1.83501 1.09600 1.85831 1.07407 1.23081 0.98156 1.55507 0.91320 0.91472 1.26029 0.93929 0.93864 1.04901 1.70119 1.01008 1.45518 1.37650 0.84987 0.78691 0.78566 0.76279 1.18922 1.18925 1.19883 1.21613 0.95925 0.94787 0.94501 0.89744 0.88732 0.87309 0.91283 0.91376 0.75753 0.89872 0.90367 0.94422 0.74569 0.80659 0.80481 0.84710 0.91711 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.45 113.37 1.18 0.32 16 2 S -0.27 -4.38 20.10 -56.49 -1.14 -5.51 16 3 C -0.06 -0.76 2.28 30.59 0.07 -0.69 16 4 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 5 C 0.08 0.89 6.35 71.98 0.46 1.34 16 6 O -0.58 -10.75 12.53 -148.98 -1.87 -12.62 16 7 C 0.17 3.59 1.96 44.99 0.09 3.68 16 8 H 0.07 2.01 6.99 -2.39 -0.02 2.00 16 9 C -0.16 -3.26 9.25 71.98 0.67 -2.60 16 10 N -0.70 -14.12 4.41 -445.38 -1.96 -16.08 16 11 C 0.57 18.11 7.74 86.79 0.67 18.78 16 12 O -0.58 -24.90 16.01 -3.89 -0.06 -24.96 16 13 C -0.15 -4.99 5.87 -20.11 -0.12 -5.10 16 14 C -0.06 -1.31 9.54 22.57 0.22 -1.10 16 15 C -0.12 -2.71 10.02 22.21 0.22 -2.49 16 16 C -0.06 -2.14 9.79 22.48 0.22 -1.92 16 17 C -0.13 -5.68 5.45 22.65 0.12 -5.56 16 18 S -0.10 -5.42 21.41 -56.49 -1.21 -6.63 16 19 C -0.53 -31.61 9.46 67.94 0.64 -30.96 16 20 H 0.07 3.94 7.79 -2.91 -0.02 3.92 16 21 C 0.02 1.04 5.49 84.84 0.47 1.50 16 22 N -0.91 -55.27 13.22 21.64 0.29 -54.99 16 23 Si 0.99 45.08 29.55 68.60 2.03 47.10 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 C -0.05 -1.99 9.34 22.70 0.21 -1.78 16 28 H 0.08 0.50 7.02 -2.39 -0.02 0.49 16 29 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.50 6.72 -2.39 -0.02 0.48 16 32 H 0.07 0.61 7.61 -2.39 -0.02 0.60 16 33 H 0.39 4.35 9.12 -74.06 -0.68 3.68 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.57 6.91 -2.39 -0.02 1.55 16 36 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.42 4.66 6.43 -92.71 -0.60 4.06 16 38 H 0.18 1.66 6.40 -2.91 -0.02 1.64 16 39 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 40 H 0.14 4.41 8.06 -2.91 -0.02 4.38 16 41 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.10 4.92 7.65 -2.91 -0.02 4.90 16 Total: -1.00 -85.47 379.32 0.98 -84.49 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -0.21 Total: 15.78 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: 5.12 Total: -26.58 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -1.68 Total: -71.07 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.93 Total: -37.58 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: -9.80 SS G_CDS: -2.34 Total: -12.15 kcal Total: -85.47 0.98 -84.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126765498.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.380 kcal (2) G-P(sol) polarization free energy of solvation -85.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 36.65 seconds