Wall clock time and date at job start Tue Mar 31 2020 23:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81408 * 102.99974 * 2 1 4 4 H 1.08997 * 109.46677 * 55.00199 * 3 2 1 5 5 C 1.53002 * 109.47111 * 295.00106 * 3 2 1 6 6 O 1.42895 * 109.47090 * 294.99850 * 5 3 2 7 7 C 1.52996 * 109.46945 * 174.99781 * 3 2 1 8 8 H 1.09000 * 109.47004 * 184.99605 * 7 3 2 9 9 C 1.53001 * 109.47627 * 305.00478 * 7 3 2 10 10 N 1.46506 * 109.46901 * 65.00394 * 7 3 2 11 11 C 1.34777 * 120.00152 * 154.99515 * 10 7 3 12 12 O 1.21559 * 119.99753 * 0.02562 * 11 10 7 13 13 C 1.47859 * 120.00444 * 179.97438 * 11 10 7 14 14 C 1.39672 * 120.09541 * 359.72954 * 13 11 10 15 15 C 1.38050 * 120.03326 * 179.74262 * 14 13 11 16 16 C 1.38175 * 120.24624 * 0.55673 * 15 14 13 17 17 C 1.39179 * 120.19882 * 359.69266 * 16 15 14 18 18 S 1.76198 * 120.01982 * 180.02562 * 17 16 15 19 19 C 1.76205 * 99.99956 * 265.52772 * 18 17 16 20 20 H 1.08000 * 120.00108 * 5.12328 * 19 18 17 21 21 C 1.38727 * 119.99746 * 185.11542 * 19 18 17 22 22 N 1.31622 * 120.00531 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99797 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47199 * 59.99926 * 23 21 19 25 25 H 1.48498 * 109.47163 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47077 * 300.00187 * 23 21 19 27 27 C 1.38877 * 119.96395 * 0.02717 * 17 16 15 28 28 H 1.09004 * 109.47369 * 60.00067 * 1 2 3 29 29 H 1.08995 * 109.47407 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46976 * 299.99872 * 1 2 3 31 31 H 1.09001 * 109.46973 * 54.99746 * 5 3 2 32 32 H 1.09003 * 109.46605 * 174.99505 * 5 3 2 33 33 H 0.96704 * 114.00070 * 179.97438 * 6 5 3 34 34 H 1.08995 * 109.46915 * 180.02562 * 9 7 3 35 35 H 1.09005 * 109.46589 * 299.99655 * 9 7 3 36 36 H 1.08991 * 109.47078 * 59.99554 * 9 7 3 37 37 H 0.96994 * 120.00210 * 335.00032 * 10 7 3 38 38 H 1.08000 * 119.98776 * 359.97438 * 14 13 11 39 39 H 1.08002 * 119.87280 * 180.26969 * 15 14 13 40 40 H 1.07995 * 119.89981 * 179.72045 * 16 15 14 41 41 H 0.96998 * 120.00070 * 179.97438 * 22 21 19 42 42 H 1.07997 * 120.12687 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7427 2.4017 -1.3074 6 8 2.4729 1.8452 -2.4024 7 6 3.7369 1.9412 0.1258 8 1 3.9749 3.0012 0.2150 9 6 4.2338 1.2003 1.3688 10 7 4.3918 1.3923 -1.0643 11 6 5.6046 1.8473 -1.4364 12 8 6.1553 2.7128 -0.7843 13 6 6.2659 1.2930 -2.6371 14 6 5.6379 0.2936 -3.3840 15 6 6.2541 -0.2193 -4.5078 16 6 7.4977 0.2441 -4.8924 17 6 8.1348 1.2359 -4.1525 18 16 9.7203 1.8238 -4.6476 19 6 10.7513 0.7984 -3.6523 20 1 10.3143 0.0159 -3.0497 21 6 12.1244 0.9961 -3.6430 22 7 12.6570 1.9499 -4.3771 23 14 13.2174 -0.0915 -2.5884 24 1 13.0616 -1.5069 -3.0098 25 1 14.6341 0.3217 -2.7539 26 1 12.8253 0.0466 -1.1628 27 6 7.5201 1.7620 -3.0238 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.6796 2.2010 -1.4401 32 1 1.9074 3.4786 -1.2706 33 1 2.2204 2.2016 -3.2652 34 1 5.3129 1.3245 1.4585 35 1 3.7466 1.6088 2.2542 36 1 3.9958 0.1405 1.2794 37 1 3.9525 0.7014 -1.5844 38 1 4.6681 -0.0754 -3.0844 39 1 5.7642 -0.9889 -5.0860 40 1 7.9766 -0.1643 -5.7700 41 1 13.6171 2.0884 -4.3702 42 1 8.0119 2.5320 -2.4479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126765733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:19 Heat of formation + Delta-G solvation = -57.393786 kcal Electronic energy + Delta-G solvation = -24813.984646 eV Core-core repulsion = 21204.654497 eV Total energy + Delta-G solvation = -3609.330149 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = -0.40 seconds Orbital eigenvalues (eV) -40.00491 -38.22219 -37.33269 -35.39701 -32.45275 -32.34683 -30.61827 -30.36272 -29.59304 -28.68992 -25.51028 -24.29606 -23.33292 -22.23359 -21.22537 -20.26667 -18.37853 -17.77153 -17.38311 -16.85970 -15.95757 -15.50322 -15.32249 -15.07490 -14.84603 -14.78928 -14.49074 -14.34490 -13.95209 -13.72150 -13.64188 -13.27792 -13.18379 -12.97171 -12.85028 -12.54234 -12.14724 -12.05022 -11.82838 -11.52500 -11.15980 -11.09450 -11.03618 -10.99314 -10.64058 -10.58848 -10.08774 -9.89731 -9.59424 -9.09562 -8.94445 -8.84625 -8.44026 -7.98347 -7.93286 -6.64614 -6.22885 -3.96249 1.19570 1.32283 1.79396 2.13122 3.16237 3.26954 3.28844 3.30288 3.32012 3.55085 3.73100 4.17179 4.18689 4.36002 4.48193 4.66545 4.71868 4.87973 4.91791 4.98876 5.06675 5.13373 5.21933 5.23635 5.28976 5.30181 5.41132 5.54221 5.60133 5.80472 5.88868 6.00000 6.13957 6.16232 6.38552 6.63453 6.74673 6.77903 7.04860 7.25678 7.32476 7.63086 7.83912 8.38483 8.53982 9.22837 10.83780 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.002640 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.902348 B =10601.569832 C =11076.767754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.223 6.223 3 C -0.072 4.072 4 H 0.111 0.889 5 C 0.084 3.916 6 O -0.552 6.552 7 C 0.169 3.831 8 H 0.097 0.903 9 C -0.168 4.168 10 N -0.701 5.701 11 C 0.564 3.436 12 O -0.547 6.547 13 C -0.150 4.150 14 C -0.083 4.083 15 C -0.144 4.144 16 C -0.057 4.057 17 C -0.109 4.109 18 S -0.037 6.037 19 C -0.518 4.518 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.871 5.871 23 Si 0.920 3.080 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.273 1.273 27 C -0.021 4.021 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.380 0.620 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.411 0.589 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.129 0.871 41 H 0.270 0.730 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.606 -2.292 6.572 28.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.003 5.997 3 C -0.201 4.201 4 H 0.129 0.871 5 C 0.003 3.997 6 O -0.357 6.357 7 C 0.063 3.937 8 H 0.114 0.886 9 C -0.227 4.227 10 N -0.358 5.358 11 C 0.352 3.648 12 O -0.426 6.426 13 C -0.155 4.155 14 C -0.102 4.102 15 C -0.163 4.163 16 C -0.078 4.078 17 C -0.219 4.219 18 S 0.197 5.803 19 C -0.665 4.665 20 H 0.093 0.907 21 C -0.136 4.136 22 N -0.507 5.507 23 Si 0.746 3.254 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.198 1.198 27 C -0.043 4.043 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.228 0.772 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.252 0.748 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.079 0.921 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.764 -1.962 6.696 26.692 hybrid contribution -1.211 -0.552 0.911 1.613 sum -26.975 -2.514 7.607 28.140 Atomic orbital electron populations 1.23482 0.95406 1.06552 1.04641 1.87078 1.05962 1.09148 1.97542 1.23810 1.00424 0.95859 1.00018 0.87108 1.22158 0.94195 0.96671 0.86633 1.86497 1.64167 1.67941 1.17142 1.20525 0.86885 0.99900 0.86423 0.88552 1.22271 1.02581 1.01398 0.96429 1.45947 1.18785 1.42852 1.28174 1.18379 0.80719 0.81471 0.84188 1.90747 1.64686 1.31939 1.55201 1.19861 0.97099 1.01110 0.97408 1.21203 0.98837 0.95367 0.94830 1.21053 0.96163 1.01368 0.97763 1.21922 0.93752 0.93586 0.98581 1.22796 1.02893 0.99016 0.97235 1.83556 0.88978 1.51869 1.55900 1.22801 0.93075 1.19146 1.31524 0.90693 1.24993 0.97116 0.95720 0.95750 1.69979 1.12486 1.30122 1.38102 0.86189 0.78636 0.80168 0.80405 1.19835 1.20778 1.19797 1.21925 0.91732 0.96535 0.94070 0.90656 0.88035 0.90623 0.93595 0.92522 0.77233 0.91377 0.91713 0.91158 0.74793 0.86165 0.86046 0.85279 0.92070 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.67 10.45 101.05 1.06 0.39 16 2 S -0.22 -1.81 19.01 -107.50 -2.04 -3.86 16 3 C -0.07 -0.54 2.64 -26.73 -0.07 -0.61 16 4 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 5 C 0.08 0.53 6.58 37.16 0.24 0.77 16 6 O -0.55 -4.18 9.95 -35.23 -0.35 -4.53 16 7 C 0.17 1.81 2.38 -67.93 -0.16 1.65 16 8 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 9 C -0.17 -1.81 9.17 37.16 0.34 -1.47 16 10 N -0.70 -8.97 3.42 -54.74 -0.19 -9.16 16 11 C 0.56 9.63 7.74 -12.32 -0.10 9.54 16 12 O -0.55 -11.18 16.01 5.31 0.09 -11.09 16 13 C -0.15 -2.68 5.87 -105.00 -0.62 -3.30 16 14 C -0.08 -1.24 9.54 -39.11 -0.37 -1.62 16 15 C -0.14 -2.19 10.02 -39.67 -0.40 -2.58 16 16 C -0.06 -1.07 9.79 -39.25 -0.38 -1.45 16 17 C -0.11 -2.41 5.45 -39.00 -0.21 -2.62 16 18 S -0.04 -0.99 21.41 -107.50 -2.30 -3.29 16 19 C -0.52 -14.96 9.46 30.91 0.29 -14.67 16 20 H 0.07 2.15 7.79 -52.49 -0.41 1.74 16 21 C 0.07 2.09 5.49 -17.46 -0.10 1.99 16 22 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 23 Si 0.92 21.91 29.55 -169.99 -5.02 16.89 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 C -0.02 -0.44 9.34 -38.92 -0.36 -0.81 16 28 H 0.07 0.33 7.02 -51.92 -0.36 -0.04 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.31 8.14 -51.92 -0.42 -0.12 16 31 H 0.05 0.22 6.72 -51.93 -0.35 -0.13 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.38 1.64 9.12 45.56 0.42 2.06 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.76 6.72 -51.93 -0.35 0.42 16 37 H 0.41 4.86 4.21 -40.82 -0.17 4.69 16 38 H 0.12 1.44 6.40 -52.49 -0.34 1.11 16 39 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.14 3.15 7.65 -52.49 -0.40 2.75 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -34.32 374.29 -9.16 -43.48 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.88 Total: 5.88 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -0.84 Total: -14.77 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.55 Total: -34.35 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.27 Total: -15.62 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -4.34 Total: -7.15 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.32 -9.16 -43.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126765733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.918 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.40 seconds