Wall clock time and date at job start Tue Mar 31 2020 23:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81408 * 102.99974 * 2 1 4 4 H 1.08997 * 109.46677 * 55.00199 * 3 2 1 5 5 C 1.53002 * 109.47111 * 295.00106 * 3 2 1 6 6 O 1.42895 * 109.47090 * 294.99850 * 5 3 2 7 7 C 1.52996 * 109.46945 * 174.99781 * 3 2 1 8 8 H 1.09000 * 109.47004 * 184.99605 * 7 3 2 9 9 C 1.53001 * 109.47627 * 305.00478 * 7 3 2 10 10 N 1.46506 * 109.46901 * 65.00394 * 7 3 2 11 11 C 1.34777 * 120.00152 * 154.99515 * 10 7 3 12 12 O 1.21559 * 119.99753 * 0.02562 * 11 10 7 13 13 C 1.47859 * 120.00444 * 179.97438 * 11 10 7 14 14 C 1.39672 * 120.09541 * 359.72954 * 13 11 10 15 15 C 1.38050 * 120.03326 * 179.74262 * 14 13 11 16 16 C 1.38175 * 120.24624 * 0.55673 * 15 14 13 17 17 C 1.39179 * 120.19882 * 359.69266 * 16 15 14 18 18 S 1.76198 * 120.01982 * 180.02562 * 17 16 15 19 19 C 1.76205 * 99.99956 * 265.52772 * 18 17 16 20 20 H 1.08000 * 120.00108 * 5.12328 * 19 18 17 21 21 C 1.38727 * 119.99746 * 185.11542 * 19 18 17 22 22 N 1.31622 * 120.00531 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99797 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47199 * 59.99926 * 23 21 19 25 25 H 1.48498 * 109.47163 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47077 * 300.00187 * 23 21 19 27 27 C 1.38877 * 119.96395 * 0.02717 * 17 16 15 28 28 H 1.09004 * 109.47369 * 60.00067 * 1 2 3 29 29 H 1.08995 * 109.47407 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46976 * 299.99872 * 1 2 3 31 31 H 1.09001 * 109.46973 * 54.99746 * 5 3 2 32 32 H 1.09003 * 109.46605 * 174.99505 * 5 3 2 33 33 H 0.96704 * 114.00070 * 179.97438 * 6 5 3 34 34 H 1.08995 * 109.46915 * 180.02562 * 9 7 3 35 35 H 1.09005 * 109.46589 * 299.99655 * 9 7 3 36 36 H 1.08991 * 109.47078 * 59.99554 * 9 7 3 37 37 H 0.96994 * 120.00210 * 335.00032 * 10 7 3 38 38 H 1.08000 * 119.98776 * 359.97438 * 14 13 11 39 39 H 1.08002 * 119.87280 * 180.26969 * 15 14 13 40 40 H 1.07995 * 119.89981 * 179.72045 * 16 15 14 41 41 H 0.96998 * 120.00070 * 179.97438 * 22 21 19 42 42 H 1.07997 * 120.12687 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7427 2.4017 -1.3074 6 8 2.4729 1.8452 -2.4024 7 6 3.7369 1.9412 0.1258 8 1 3.9749 3.0012 0.2150 9 6 4.2338 1.2003 1.3688 10 7 4.3918 1.3923 -1.0643 11 6 5.6046 1.8473 -1.4364 12 8 6.1553 2.7128 -0.7843 13 6 6.2659 1.2930 -2.6371 14 6 5.6379 0.2936 -3.3840 15 6 6.2541 -0.2193 -4.5078 16 6 7.4977 0.2441 -4.8924 17 6 8.1348 1.2359 -4.1525 18 16 9.7203 1.8238 -4.6476 19 6 10.7513 0.7984 -3.6523 20 1 10.3143 0.0159 -3.0497 21 6 12.1244 0.9961 -3.6430 22 7 12.6570 1.9499 -4.3771 23 14 13.2174 -0.0915 -2.5884 24 1 13.0616 -1.5069 -3.0098 25 1 14.6341 0.3217 -2.7539 26 1 12.8253 0.0466 -1.1628 27 6 7.5201 1.7620 -3.0238 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.6796 2.2010 -1.4401 32 1 1.9074 3.4786 -1.2706 33 1 2.2204 2.2016 -3.2652 34 1 5.3129 1.3245 1.4585 35 1 3.7466 1.6088 2.2542 36 1 3.9958 0.1405 1.2794 37 1 3.9525 0.7014 -1.5844 38 1 4.6681 -0.0754 -3.0844 39 1 5.7642 -0.9889 -5.0860 40 1 7.9766 -0.1643 -5.7700 41 1 13.6171 2.0884 -4.3702 42 1 8.0119 2.5320 -2.4479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126765733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:02 Heat of formation + Delta-G solvation = -80.703182 kcal Electronic energy + Delta-G solvation = -24814.995417 eV Core-core repulsion = 21204.654497 eV Total energy + Delta-G solvation = -3610.340920 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 14.76 seconds Orbital eigenvalues (eV) -41.27297 -39.39509 -38.31273 -36.27790 -34.64949 -33.49161 -31.94489 -31.56950 -30.39611 -29.20105 -27.73738 -25.41150 -24.23909 -23.63414 -22.20159 -21.52374 -20.01146 -19.04370 -18.41288 -17.75826 -17.17524 -16.92882 -16.67106 -16.33057 -16.09381 -15.74794 -15.68214 -15.51249 -15.17803 -14.69310 -14.59420 -14.51707 -14.11292 -13.92050 -13.70220 -13.65578 -13.31795 -13.23464 -13.03911 -12.96099 -12.84319 -12.64054 -12.44573 -12.36647 -11.93098 -11.74114 -11.23737 -11.16384 -10.99833 -10.71839 -10.59539 -10.09431 -9.80149 -9.65349 -8.79413 -8.55799 -8.38602 -6.18450 -0.12007 0.29033 0.66367 1.29474 1.38724 1.44657 1.65190 1.66781 1.89038 2.17823 2.26981 2.85806 2.94061 3.20037 3.42857 3.53892 3.74362 3.96995 3.98415 4.08526 4.23464 4.29913 4.35891 4.40771 4.41206 4.47265 4.52520 4.54707 4.61012 4.70330 4.75950 4.91998 4.96549 4.98456 5.25490 5.29414 5.36032 5.39629 5.52391 5.55628 5.90328 6.16101 6.64574 6.93809 7.01423 7.30134 8.68244 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.002640 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.902348 B =10601.569832 C =11076.767754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.269 6.269 3 C -0.061 4.061 4 H 0.134 0.866 5 C 0.084 3.916 6 O -0.573 6.573 7 C 0.163 3.837 8 H 0.082 0.918 9 C -0.163 4.163 10 N -0.676 5.676 11 C 0.560 3.440 12 O -0.591 6.591 13 C -0.152 4.152 14 C -0.058 4.058 15 C -0.121 4.121 16 C -0.064 4.064 17 C -0.128 4.128 18 S -0.094 6.094 19 C -0.537 4.537 20 H 0.066 0.934 21 C 0.020 3.980 22 N -0.906 5.906 23 Si 0.991 3.009 24 H -0.260 1.260 25 H -0.270 1.270 26 H -0.272 1.272 27 C -0.046 4.046 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.394 0.606 34 H 0.034 0.966 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.419 0.581 38 H 0.163 0.837 39 H 0.173 0.827 40 H 0.135 0.865 41 H 0.274 0.726 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.226 -4.613 7.020 32.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.043 6.043 3 C -0.189 4.189 4 H 0.152 0.848 5 C 0.004 3.996 6 O -0.381 6.381 7 C 0.057 3.943 8 H 0.100 0.900 9 C -0.221 4.221 10 N -0.331 5.331 11 C 0.348 3.652 12 O -0.474 6.474 13 C -0.157 4.157 14 C -0.077 4.077 15 C -0.140 4.140 16 C -0.084 4.084 17 C -0.240 4.240 18 S 0.141 5.859 19 C -0.684 4.684 20 H 0.084 0.916 21 C -0.185 4.185 22 N -0.542 5.542 23 Si 0.812 3.188 24 H -0.185 1.185 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.068 4.068 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.244 0.756 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.262 0.738 38 H 0.180 0.820 39 H 0.191 0.809 40 H 0.153 0.847 41 H 0.083 0.917 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -29.441 -4.298 7.126 30.594 hybrid contribution -0.335 0.147 0.788 0.869 sum -29.775 -4.151 7.914 31.088 Atomic orbital electron populations 1.23517 0.92099 1.07306 1.05824 1.87217 1.09603 1.09781 1.97705 1.23747 0.97501 0.95845 1.01844 0.84827 1.22221 0.95264 0.96482 0.85656 1.86398 1.64952 1.68480 1.18285 1.20683 0.89349 0.98907 0.85341 0.89990 1.22218 1.00618 1.01743 0.97560 1.45821 1.17035 1.41880 1.28356 1.18361 0.81763 0.81226 0.83840 1.90728 1.66043 1.34082 1.56528 1.19975 0.95917 1.01697 0.98124 1.21624 0.99690 0.92924 0.93427 1.21519 0.94180 1.00965 0.97352 1.22042 0.95229 0.92742 0.98430 1.22469 1.00705 1.01693 0.99093 1.83426 0.92838 1.53246 1.56423 1.23032 0.94117 1.19432 1.31808 0.91603 1.25998 0.98460 0.97147 0.96932 1.70099 1.13018 1.31663 1.39441 0.85117 0.76869 0.78581 0.78189 1.18487 1.19411 1.19667 1.21599 0.93706 0.97128 0.94363 0.89562 0.87489 0.89345 0.91230 0.92416 0.75557 0.94642 0.89356 0.90963 0.73829 0.81977 0.80912 0.84671 0.91681 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.45 113.37 1.18 0.45 16 2 S -0.27 -3.53 19.01 -56.49 -1.07 -4.60 16 3 C -0.06 -0.73 2.64 30.59 0.08 -0.65 16 4 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 5 C 0.08 0.79 6.58 71.98 0.47 1.26 16 6 O -0.57 -6.83 9.95 -148.98 -1.48 -8.31 16 7 C 0.16 3.30 2.38 44.99 0.11 3.41 16 8 H 0.08 1.94 7.58 -2.39 -0.02 1.92 16 9 C -0.16 -3.39 9.17 71.98 0.66 -2.73 16 10 N -0.68 -16.38 3.42 -445.38 -1.52 -17.91 16 11 C 0.56 19.31 7.74 86.79 0.67 19.98 16 12 O -0.59 -25.46 16.01 -3.90 -0.06 -25.52 16 13 C -0.15 -5.41 5.87 -20.11 -0.12 -5.53 16 14 C -0.06 -1.54 9.54 22.57 0.22 -1.32 16 15 C -0.12 -3.21 10.02 22.21 0.22 -2.99 16 16 C -0.06 -2.31 9.79 22.48 0.22 -2.09 16 17 C -0.13 -5.91 5.45 22.65 0.12 -5.79 16 18 S -0.09 -5.28 21.41 -56.49 -1.21 -6.49 16 19 C -0.54 -32.39 9.46 67.94 0.64 -31.75 16 20 H 0.07 3.94 7.79 -2.91 -0.02 3.92 16 21 C 0.02 1.17 5.49 84.84 0.47 1.63 16 22 N -0.91 -55.70 13.22 21.63 0.29 -55.42 16 23 Si 0.99 45.76 29.55 68.60 2.03 47.79 16 24 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 27 C -0.05 -2.07 9.34 22.70 0.21 -1.85 16 28 H 0.09 0.37 7.02 -2.39 -0.02 0.35 16 29 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.36 6.72 -2.39 -0.02 0.34 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.39 2.13 9.12 -74.05 -0.68 1.46 16 34 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.07 1.48 6.72 -2.39 -0.02 1.46 16 37 H 0.42 8.71 4.21 -92.71 -0.39 8.32 16 38 H 0.16 3.01 6.40 -2.91 -0.02 2.99 16 39 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 40 H 0.14 4.70 8.06 -2.91 -0.02 4.67 16 41 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 42 H 0.10 5.13 7.65 -2.91 -0.02 5.10 16 Total: -1.00 -80.93 374.29 2.11 -78.82 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -0.01 Total: 19.61 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 5.16 Total: -27.97 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -1.24 Total: -73.32 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -1.55 Total: -33.83 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -2.28 Total: -11.09 kcal Total: -80.93 2.11 -78.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126765733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.883 kcal (2) G-P(sol) polarization free energy of solvation -80.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.76 seconds