Wall clock time and date at job start Tue Mar 31 2020 23:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47918 * 2 1 4 4 C 1.50696 * 109.47168 * 120.00666 * 2 1 3 5 5 H 1.07998 * 120.00721 * 119.99369 * 4 2 1 6 6 C 1.37879 * 119.99591 * 299.99279 * 4 2 1 7 7 N 1.31510 * 120.00349 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99918 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47183 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.46839 * 300.00145 * 8 6 4 11 11 H 1.48495 * 109.47076 * 59.99980 * 8 6 4 12 12 N 1.46906 * 109.46921 * 239.99892 * 2 1 3 13 13 C 1.46905 * 110.99970 * 306.05139 * 12 2 1 14 14 C 1.46903 * 110.99645 * 70.00299 * 12 2 1 15 15 C 1.50703 * 109.47104 * 170.00317 * 14 12 2 16 16 O 1.21288 * 119.99594 * 359.97438 * 15 14 12 17 17 N 1.34771 * 120.00143 * 180.02562 * 15 14 12 18 18 C 1.39969 * 120.00050 * 174.72783 * 17 15 14 19 19 C 1.38888 * 120.05785 * 326.54626 * 18 17 15 20 20 C 1.38087 * 119.94245 * 179.74519 * 19 18 17 21 21 C 1.38409 * 120.05776 * 0.50919 * 20 19 18 22 22 Cl 1.73600 * 119.94259 * 179.74324 * 21 20 19 23 23 C 1.38362 * 120.11122 * 359.77074 * 21 20 19 24 24 N 1.48021 * 119.96760 * 180.02562 * 23 21 20 25 25 O 1.21801 * 120.00104 * 179.97438 * 24 23 21 26 26 O 1.21804 * 119.99640 * 359.97208 * 24 23 21 27 27 C 1.38125 * 120.06204 * 359.96935 * 23 21 20 28 28 H 1.09001 * 109.46827 * 300.00220 * 1 2 3 29 29 H 1.09003 * 109.46962 * 59.99477 * 1 2 3 30 30 H 1.08994 * 109.47918 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00559 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47032 * 59.99808 * 13 12 2 33 33 H 1.09003 * 109.46802 * 179.97438 * 13 12 2 34 34 H 1.08991 * 109.47087 * 299.99565 * 13 12 2 35 35 H 1.09002 * 109.47118 * 290.00066 * 14 12 2 36 36 H 1.08994 * 109.46988 * 50.00122 * 14 12 2 37 37 H 0.97004 * 120.00177 * 354.71966 * 17 15 14 38 38 H 1.08000 * 120.02700 * 359.97438 * 19 18 17 39 39 H 1.08004 * 119.96996 * 180.23336 * 20 19 18 40 40 H 1.08000 * 120.02941 * 179.97438 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6531 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4826 7 7 0.9429 0.8296 2.6034 8 14 2.3214 -1.1206 4.0079 9 1 1.8261 -0.4208 5.2204 10 1 1.8256 -2.5204 4.0076 11 1 3.8063 -1.1213 4.0080 12 7 2.0196 -0.6926 -1.1995 13 6 1.4341 -2.0355 -1.3079 14 6 1.7529 0.0973 -2.4091 15 6 2.4772 -0.5163 -3.5795 16 8 3.1499 -1.5131 -3.4215 17 7 2.3784 0.0432 -4.8016 18 6 3.1371 -0.4596 -5.8650 19 6 4.4036 -0.9796 -5.6312 20 6 5.1478 -1.4799 -6.6812 21 6 4.6371 -1.4538 -7.9673 22 17 5.5781 -2.0774 -9.2862 23 6 3.3781 -0.9310 -8.2038 24 7 2.8348 -0.9052 -9.5804 25 8 1.7263 -0.4455 -9.7891 26 8 3.4962 -1.3436 -10.5044 27 6 2.6273 -0.4342 -7.1562 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 0.7089 1.1612 3.4844 32 1 0.3488 -1.9548 -1.3694 33 1 1.8131 -2.5258 -2.2046 34 1 1.7057 -2.6221 -0.4304 35 1 0.6813 0.1054 -2.6087 36 1 2.1025 1.1188 -2.2603 37 1 1.7814 0.7944 -4.9444 38 1 4.8044 -0.9961 -4.6284 39 1 6.1312 -1.8878 -6.4993 40 1 1.6448 -0.0259 -7.3414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129556438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:32 Heat of formation + Delta-G solvation = 13.216798 kcal Electronic energy + Delta-G solvation = -26650.392326 eV Core-core repulsion = 22495.787161 eV Total energy + Delta-G solvation = -4154.605165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -42.46650 -40.99532 -39.22900 -37.33519 -36.84973 -36.67042 -35.07620 -32.85655 -32.44866 -30.74543 -29.13389 -27.51783 -26.90524 -25.34518 -24.50443 -23.49668 -22.87250 -21.02669 -19.61869 -19.39434 -18.91726 -17.83431 -17.64908 -17.32446 -16.83160 -16.26315 -16.06481 -15.38359 -14.91362 -14.81182 -14.38722 -14.23757 -14.16254 -13.46376 -13.29820 -12.92007 -12.78711 -12.58918 -12.36927 -12.27116 -11.73333 -11.67077 -11.35497 -11.20708 -11.13928 -10.97694 -10.81546 -10.78726 -10.70576 -10.60206 -10.27740 -10.14952 -10.06230 -9.66727 -9.03212 -8.78620 -8.47854 -7.36828 -6.10897 -4.14451 -0.56901 0.26428 0.93974 0.98641 1.43267 2.30971 2.55008 2.85244 3.27786 3.32034 3.35538 3.75703 4.18139 4.22565 4.30773 4.35263 4.65020 4.85888 4.87237 4.90688 5.21674 5.24512 5.43456 5.48576 5.55459 5.60729 5.98643 6.10864 6.19092 6.25392 6.52624 6.66090 6.81243 6.91284 6.92649 7.25765 7.36961 7.56164 7.71213 7.86969 7.97706 8.20864 8.41705 8.91172 9.50948 10.96337 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.027543 B = 0.002101 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.361339 B =13322.926141 C =14030.546860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.212 3.788 3 H 0.040 0.960 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.276 1.276 12 N -0.517 5.517 13 C 0.028 3.972 14 C 0.038 3.962 15 C 0.517 3.483 16 O -0.491 6.491 17 N -0.680 5.680 18 C 0.172 3.828 19 C -0.061 4.061 20 C -0.087 4.087 21 C -0.008 4.008 22 Cl -0.012 7.012 23 C -0.020 4.020 24 N 0.029 4.971 25 O -0.164 6.164 26 O -0.136 6.136 27 C -0.083 4.083 28 H 0.091 0.909 29 H 0.005 0.995 30 H 0.034 0.966 31 H 0.262 0.738 32 H 0.016 0.984 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.417 0.583 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.677 -0.356 -20.254 20.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.107 3.893 3 H 0.058 0.942 4 C -0.538 4.538 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.202 1.202 12 N -0.241 5.241 13 C -0.120 4.120 14 C -0.094 4.094 15 C 0.306 3.694 16 O -0.362 6.362 17 N -0.328 5.328 18 C 0.075 3.925 19 C -0.082 4.082 20 C -0.107 4.107 21 C -0.037 4.037 22 Cl 0.018 6.982 23 C -0.105 4.105 24 N 0.549 4.451 25 O -0.377 6.377 26 O -0.356 6.356 27 C -0.105 4.105 28 H 0.109 0.891 29 H 0.024 0.976 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.123 0.877 37 H 0.254 0.746 38 H 0.184 0.816 39 H 0.179 0.821 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.885 -1.058 -19.247 20.154 hybrid contribution -1.097 0.073 0.247 1.126 sum 4.788 -0.985 -19.000 19.619 Atomic orbital electron populations 1.22446 1.00636 0.99711 1.00604 1.19382 0.89861 0.94469 0.85627 0.94189 1.21022 1.30764 1.12653 0.89365 0.91834 1.24915 0.95153 0.95129 0.99041 1.69852 1.36925 1.23028 1.23686 0.86545 0.79276 0.79622 0.81894 1.21373 1.20315 1.20174 1.62179 1.59150 1.02386 1.00383 1.22388 0.95833 0.91350 1.02399 1.21957 0.97940 0.99318 0.90187 1.21548 0.81370 0.83674 0.82852 1.90688 1.38705 1.23558 1.83277 1.43892 1.44817 1.36041 1.08029 1.17530 0.90887 0.97288 0.86811 1.21744 0.91112 0.93993 1.01334 1.21108 1.01619 0.99481 0.88510 1.20747 0.91247 0.99644 0.92089 1.98461 1.70595 1.84309 1.44847 1.20468 0.95555 1.11304 0.83180 1.43394 1.00542 0.98552 1.02600 1.94551 1.05889 1.47256 1.90001 1.94620 1.58476 1.46957 1.35579 1.20640 1.00672 0.99403 0.89787 0.89055 0.97557 0.94689 0.92851 0.96595 0.92346 0.90700 0.92097 0.87739 0.74554 0.81609 0.82146 0.81871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 8.22 37.16 0.31 -3.53 16 2 C 0.21 4.89 2.31 -68.86 -0.16 4.73 16 3 H 0.04 0.99 7.93 -51.93 -0.41 0.58 16 4 C -0.50 -13.01 7.97 -34.44 -0.27 -13.29 16 5 H 0.06 1.69 7.10 -52.49 -0.37 1.32 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -24.24 11.32 55.43 0.63 -23.61 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.52 -10.14 4.44 -237.73 -1.06 -11.20 16 13 C 0.03 0.54 8.46 60.07 0.51 1.05 16 14 C 0.04 0.55 5.02 -4.97 -0.02 0.52 16 15 C 0.52 6.68 7.26 -10.99 -0.08 6.60 16 16 O -0.49 -7.90 12.03 5.55 0.07 -7.83 16 17 N -0.68 -6.05 5.34 -9.85 -0.05 -6.10 16 18 C 0.17 1.59 6.28 -83.68 -0.53 1.06 16 19 C -0.06 -0.58 8.65 -39.40 -0.34 -0.92 16 20 C -0.09 -0.72 9.82 -39.57 -0.39 -1.11 16 21 C -0.01 -0.07 6.32 -39.47 -0.25 -0.32 16 22 Cl -0.01 -0.11 25.93 -51.86 -1.34 -1.45 16 23 C -0.02 -0.21 6.85 -79.94 -0.55 -0.76 16 24 N 0.03 0.35 4.45 33.97 0.15 0.50 16 25 O -0.16 -2.06 18.45 -29.46 -0.54 -2.60 16 26 O -0.14 -1.73 16.01 -29.46 -0.47 -2.20 16 27 C -0.08 -0.73 9.47 -39.40 -0.37 -1.10 16 28 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 29 H 0.01 0.11 6.91 -51.93 -0.36 -0.25 16 30 H 0.03 0.76 6.33 -51.93 -0.33 0.43 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.02 0.29 6.21 -51.93 -0.32 -0.03 16 33 H 0.06 1.05 5.82 -51.93 -0.30 0.75 16 34 H 0.07 1.55 6.86 -51.93 -0.36 1.19 16 35 H 0.06 0.81 7.06 -51.93 -0.37 0.44 16 36 H 0.10 1.37 7.93 -51.93 -0.41 0.96 16 37 H 0.42 2.34 8.82 -40.82 -0.36 1.98 16 38 H 0.17 1.73 6.43 -52.49 -0.34 1.39 16 39 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.16 1.15 7.61 -52.49 -0.40 0.75 16 LS Contribution 348.20 15.07 5.25 5.25 Total: -1.00 -29.99 348.20 -8.84 -38.83 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.20 Total: 0.37 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.24 Total: -5.62 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.33 Total: -40.41 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.95 Total: -12.63 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.34 Total: -1.45 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.99 -8.84 -38.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129556438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.051 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds