Wall clock time and date at job start Tue Mar 31 2020 23:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47212 * 2 1 4 4 C 1.53000 * 109.47308 * 239.99779 * 2 1 3 5 5 S 1.81404 * 109.47226 * 179.97438 * 4 2 1 6 6 C 1.81399 * 102.99945 * 179.97438 * 5 4 2 7 7 O 1.42104 * 109.46633 * 63.61202 * 5 4 2 8 8 N 1.46500 * 109.47000 * 119.99677 * 2 1 3 9 9 C 1.46497 * 119.99977 * 60.00295 * 8 2 1 10 10 C 1.34773 * 120.00049 * 239.99886 * 8 2 1 11 11 O 1.21550 * 119.99965 * 355.46045 * 10 8 2 12 12 C 1.47861 * 120.00311 * 175.45775 * 10 8 2 13 13 C 1.39675 * 120.10520 * 221.16175 * 12 10 8 14 14 C 1.38040 * 120.04037 * 179.74333 * 13 12 10 15 15 C 1.38178 * 120.24078 * 0.55189 * 14 13 12 16 16 C 1.39177 * 120.20535 * 359.69678 * 15 14 13 17 17 S 1.76200 * 120.02049 * 179.97438 * 16 15 14 18 18 C 1.76201 * 99.99970 * 265.12277 * 17 16 15 19 19 H 1.07994 * 120.00232 * 5.01685 * 18 17 16 20 20 C 1.38732 * 119.99963 * 185.02660 * 18 17 16 21 21 N 1.31620 * 120.00168 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99715 * 359.97438 * 20 18 17 23 23 H 1.48508 * 109.46919 * 90.00665 * 22 20 18 24 24 H 1.48500 * 109.46856 * 210.00436 * 22 20 18 25 25 H 1.48491 * 109.47214 * 330.00678 * 22 20 18 26 26 C 1.38876 * 119.95761 * 0.02830 * 16 15 14 27 27 H 1.09000 * 109.47212 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46963 * 60.00737 * 1 2 3 29 29 H 1.08996 * 109.47168 * 300.00248 * 1 2 3 30 30 H 1.09001 * 109.46879 * 299.99783 * 4 2 1 31 31 H 1.08995 * 109.47431 * 59.99956 * 4 2 1 32 32 H 1.08999 * 109.46670 * 60.00326 * 6 5 4 33 33 H 1.09001 * 109.46698 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.47371 * 299.99824 * 6 5 4 35 35 H 1.08998 * 109.47759 * 95.17443 * 9 8 2 36 36 H 1.09000 * 109.47348 * 215.17316 * 9 8 2 37 37 H 1.09000 * 109.47363 * 335.17165 * 9 8 2 38 38 H 1.08005 * 119.97622 * 359.97438 * 13 12 10 39 39 H 1.08004 * 119.87573 * 180.27221 * 14 13 12 40 40 H 1.08000 * 119.89648 * 179.71980 * 15 14 13 41 41 H 0.97000 * 119.99797 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.11934 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 3.8541 -0.7206 -1.2496 6 6 4.2621 -1.6052 -2.7798 7 8 4.3281 -1.4619 -0.1337 8 7 2.0183 -0.6905 1.1962 9 6 1.6644 -2.0931 1.4281 10 6 2.7931 -0.0355 2.0833 11 8 3.1550 1.1014 1.8511 12 6 3.2030 -0.6999 3.3391 13 6 3.2049 0.0128 4.5404 14 6 3.5827 -0.6102 5.7129 15 6 3.9711 -1.9362 5.7025 16 6 3.9780 -2.6545 4.5104 17 16 4.4749 -4.3450 4.5026 18 6 6.1744 -4.1624 4.0746 19 1 6.6063 -3.1764 3.9869 20 6 6.9576 -5.2852 3.8499 21 7 8.2272 -5.1488 3.5307 22 14 6.2107 -6.9906 4.0020 23 1 5.6674 -7.4122 2.6857 24 1 7.2558 -7.9517 4.4369 25 1 5.1151 -6.9636 5.0040 26 6 3.5941 -2.0377 3.3268 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 0.5138 0.8899 30 1 1.6767 -1.7490 -1.2491 31 1 1.6768 -0.2076 -2.1392 32 1 3.8429 -1.0699 -3.6317 33 1 5.3452 -1.6658 -2.8865 34 1 3.8436 -2.6109 -2.7408 35 1 2.4609 -2.7357 1.0529 36 1 1.5337 -2.2630 2.4968 37 1 0.7353 -2.3243 0.9072 38 1 2.9069 1.0509 4.5525 39 1 3.5789 -0.0578 6.6410 40 1 4.2700 -2.4168 6.6223 41 1 8.7749 -5.9339 3.3740 42 1 3.5981 -2.5927 2.4004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135607816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:30 Heat of formation + Delta-G solvation = -34.341774 kcal Electronic energy + Delta-G solvation = -25682.905308 eV Core-core repulsion = 22074.574769 eV Total energy + Delta-G solvation = -3608.330539 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 20.79 seconds Orbital eigenvalues (eV) -40.26837 -38.00725 -36.40585 -35.51700 -32.87454 -32.44439 -30.50522 -30.26785 -29.06878 -27.58743 -26.97793 -25.62336 -23.91717 -22.27259 -21.29463 -19.45226 -17.89091 -17.44164 -17.16832 -16.59845 -15.99457 -15.67928 -15.25987 -15.02519 -14.79984 -14.56150 -14.39157 -14.25943 -13.55334 -13.44137 -13.35868 -13.04589 -12.92447 -12.88937 -12.66278 -12.51685 -12.34857 -12.10059 -11.99624 -11.79534 -11.67315 -11.29383 -11.24107 -11.08526 -10.99702 -10.50500 -10.07303 -9.89668 -9.70928 -9.09674 -9.02645 -8.68704 -8.47540 -8.23254 -8.04421 -7.08225 -6.27384 -4.01989 1.35104 1.48441 1.72277 2.59686 2.93280 2.96676 3.01238 3.27063 3.39048 3.52718 3.83694 4.10987 4.29178 4.42750 4.75455 4.85398 4.95017 4.98304 5.03651 5.07285 5.11121 5.12353 5.20356 5.28311 5.41951 5.43608 5.46537 5.59053 5.71120 5.79812 5.80877 5.84691 5.92762 5.97477 6.08268 6.30169 6.52407 6.68278 6.74169 6.93420 7.24557 7.38666 7.97023 8.27354 8.53461 9.16338 10.82454 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010959 B = 0.004376 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.286102 B = 6396.687398 C = 7885.073538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.112 0.888 4 C -0.469 4.469 5 S 1.244 4.756 6 C -0.497 4.497 7 O -0.814 6.814 8 N -0.608 5.608 9 C 0.070 3.930 10 C 0.582 3.418 11 O -0.545 6.545 12 C -0.147 4.147 13 C -0.066 4.066 14 C -0.141 4.141 15 C -0.056 4.056 16 C -0.089 4.089 17 S -0.117 6.117 18 C -0.504 4.504 19 H 0.091 0.909 20 C 0.095 3.905 21 N -0.877 5.877 22 Si 0.857 3.143 23 H -0.268 1.268 24 H -0.273 1.273 25 H -0.239 1.239 26 C -0.040 4.040 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.271 0.729 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.280 11.524 -10.622 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.130 0.870 4 C -0.605 4.605 5 S 1.440 4.560 6 C -0.654 4.654 7 O -0.809 6.809 8 N -0.341 5.341 9 C -0.073 4.073 10 C 0.372 3.628 11 O -0.423 6.423 12 C -0.152 4.152 13 C -0.086 4.086 14 C -0.161 4.161 15 C -0.077 4.077 16 C -0.199 4.199 17 S 0.117 5.883 18 C -0.651 4.651 19 H 0.109 0.891 20 C -0.114 4.114 21 N -0.513 5.513 22 Si 0.682 3.318 23 H -0.193 1.193 24 H -0.198 1.198 25 H -0.163 1.163 26 C -0.061 4.061 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.142 0.858 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.149 0.851 41 H 0.081 0.919 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.863 11.357 -9.927 21.890 hybrid contribution -0.120 -2.013 -0.543 2.088 sum -15.983 9.344 -10.471 21.270 Atomic orbital electron populations 1.22121 0.94265 1.02458 1.02578 1.20580 0.94590 0.97554 0.81965 0.87047 1.28212 1.22803 1.06053 1.03454 1.70999 0.85885 1.14230 0.84911 1.27733 1.08599 1.10664 1.18376 1.93290 1.71961 1.73104 1.42590 1.47747 1.51157 1.12758 1.22472 1.22125 1.00637 0.81493 1.02997 1.18338 0.76427 0.84938 0.83059 1.90697 1.55290 1.18638 1.77717 1.19744 1.07154 0.94960 0.93295 1.21077 0.97271 0.98924 0.91291 1.21040 1.02097 0.95158 0.97821 1.21838 0.94382 0.93378 0.98078 1.22121 1.02201 1.01083 0.94511 1.82926 1.14035 0.99761 1.91589 1.22259 0.90587 0.97928 1.54324 0.89081 1.24737 0.94337 0.98934 0.93388 1.69934 1.05788 1.30692 1.44896 0.86751 0.80503 0.84198 0.80379 1.19290 1.19820 1.16324 1.22232 0.92666 0.92505 0.98713 0.92286 0.91166 0.91906 0.89298 0.85804 0.87509 0.87752 0.90341 0.91197 0.90217 0.91496 0.85817 0.85682 0.85131 0.91937 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.18 37.16 0.34 -0.88 16 2 C 0.16 1.62 2.69 -67.93 -0.18 1.43 16 3 H 0.11 1.15 6.91 -51.93 -0.36 0.80 16 4 C -0.47 -3.86 5.30 37.16 0.20 -3.66 16 5 S 1.24 13.23 13.69 -107.50 -1.47 11.76 16 6 C -0.50 -4.39 10.74 101.05 1.09 -3.30 16 7 O -0.81 -14.98 15.72 -35.23 -0.55 -15.53 16 8 N -0.61 -8.53 1.58 -175.05 -0.28 -8.81 16 9 C 0.07 0.95 7.80 59.85 0.47 1.42 16 10 C 0.58 10.14 6.72 -12.32 -0.08 10.06 16 11 O -0.54 -10.22 16.28 5.32 0.09 -10.14 16 12 C -0.15 -2.74 5.16 -105.00 -0.54 -3.28 16 13 C -0.07 -1.12 9.65 -39.12 -0.38 -1.50 16 14 C -0.14 -2.29 10.02 -39.68 -0.40 -2.69 16 15 C -0.06 -1.06 9.79 -39.25 -0.38 -1.44 16 16 C -0.09 -1.94 5.45 -39.00 -0.21 -2.15 16 17 S -0.12 -2.92 19.38 -107.50 -2.08 -5.00 16 18 C -0.50 -15.09 10.01 30.91 0.31 -14.78 16 19 H 0.09 3.01 8.02 -52.49 -0.42 2.59 16 20 C 0.09 2.82 5.50 -17.46 -0.10 2.72 16 21 N -0.88 -27.22 13.97 55.49 0.78 -26.44 16 22 Si 0.86 21.55 27.74 -169.99 -4.71 16.84 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.24 -5.79 6.74 56.52 0.38 -5.41 16 26 C -0.04 -0.83 7.37 -38.92 -0.29 -1.12 16 27 H 0.06 0.46 6.66 -51.93 -0.35 0.11 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.79 7.67 -51.92 -0.40 0.39 16 31 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.11 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.10 0.99 8.14 -51.92 -0.42 0.56 16 34 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.07 1.10 6.19 -51.93 -0.32 0.78 16 36 H 0.08 1.13 5.99 -51.93 -0.31 0.81 16 37 H 0.07 0.69 6.44 -51.93 -0.33 0.36 16 38 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 39 H 0.13 1.60 8.06 -52.48 -0.42 1.17 16 40 H 0.13 2.32 8.06 -52.49 -0.42 1.90 16 41 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 42 H 0.14 3.09 5.51 -52.49 -0.29 2.80 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -38.43 369.39 -8.57 -47.00 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.74 Total: 3.94 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -0.16 Total: -19.18 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.50 Total: -35.25 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.47 Total: -25.67 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Atomic # 16 Polarization: 10.31 SS G_CDS: -3.55 Total: 6.75 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.43 -8.57 -47.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135607816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.661 kcal (2) G-P(sol) polarization free energy of solvation -38.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.79 seconds