Wall clock time and date at job start Tue Mar 31 2020 23:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47573 * 2 1 4 4 C 1.52994 * 109.47499 * 239.99552 * 2 1 3 5 5 S 1.81402 * 109.47356 * 180.02562 * 4 2 1 6 6 C 1.81402 * 103.00164 * 180.02562 * 5 4 2 7 7 O 1.42102 * 109.46869 * 296.38740 * 5 4 2 8 8 N 1.46510 * 109.46807 * 119.99911 * 2 1 3 9 9 C 1.46498 * 119.99957 * 59.99838 * 8 2 1 10 10 C 1.34774 * 119.99568 * 240.00066 * 8 2 1 11 11 O 1.21552 * 120.00589 * 354.80964 * 10 8 2 12 12 C 1.47866 * 119.99838 * 174.80833 * 10 8 2 13 13 C 1.39673 * 120.09964 * 335.41565 * 12 10 8 14 14 C 1.38039 * 120.04084 * 179.97438 * 13 12 10 15 15 C 1.38177 * 120.24135 * 359.74253 * 14 13 12 16 16 C 1.39187 * 120.20323 * 0.51549 * 15 14 13 17 17 S 1.76197 * 120.02265 * 179.76554 * 16 15 14 18 18 C 1.76207 * 99.99807 * 265.73775 * 17 16 15 19 19 H 1.07993 * 119.99627 * 5.21753 * 18 17 16 20 20 C 1.38722 * 119.99615 * 185.21904 * 18 17 16 21 21 N 1.31621 * 120.00442 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99714 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47332 * 59.99894 * 22 20 18 24 24 H 1.48505 * 109.47139 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47235 * 299.99672 * 22 20 18 26 26 C 1.38874 * 119.95452 * 359.48411 * 16 15 14 27 27 H 1.09002 * 109.46363 * 60.00337 * 1 2 3 28 28 H 1.08995 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47198 * 300.00476 * 1 2 3 30 30 H 1.08995 * 109.47482 * 300.00404 * 4 2 1 31 31 H 1.09002 * 109.47223 * 60.00638 * 4 2 1 32 32 H 1.09004 * 109.46717 * 60.00073 * 6 5 4 33 33 H 1.09000 * 109.46888 * 179.97438 * 6 5 4 34 34 H 1.08991 * 109.47210 * 299.99969 * 6 5 4 35 35 H 1.08990 * 109.47077 * 275.81487 * 9 8 2 36 36 H 1.09003 * 109.46966 * 35.81573 * 9 8 2 37 37 H 1.09005 * 109.46686 * 155.81402 * 9 8 2 38 38 H 1.08006 * 119.98364 * 359.95659 * 13 12 10 39 39 H 1.08000 * 119.88364 * 180.02562 * 14 13 12 40 40 H 1.08001 * 119.89960 * 180.25347 * 15 14 13 41 41 H 0.97006 * 120.00218 * 180.02562 * 21 20 18 42 42 H 1.07996 * 120.11943 * 180.27992 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 16 3.8541 -0.7219 -1.2487 6 6 4.2623 -1.6051 -2.7798 7 8 4.3282 0.6150 -1.3329 8 7 2.0183 -0.6907 1.1963 9 6 1.6643 -2.0932 1.4281 10 6 2.7931 -0.0356 2.0834 11 8 3.1648 1.0971 1.8459 12 6 3.1910 -0.6948 3.3458 13 6 2.4096 -1.7245 3.8749 14 6 2.7826 -2.3394 5.0531 15 6 3.9314 -1.9439 5.7112 16 6 4.7147 -0.9153 5.1959 17 16 6.1753 -0.4106 6.0422 18 6 5.5295 0.9196 7.0006 19 1 4.4695 1.1261 6.9923 20 6 6.3826 1.7014 7.7655 21 7 7.6745 1.4494 7.7759 22 14 5.6981 3.1120 8.7809 23 1 4.7174 2.5845 9.7633 24 1 6.8072 3.7871 9.5017 25 1 5.0256 4.0864 7.8846 26 6 4.3473 -0.2909 4.0110 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6768 -1.7489 -1.2491 31 1 1.6769 -0.2075 -2.1392 32 1 3.8437 -1.0684 -3.6313 33 1 5.3453 -1.6664 -2.8861 34 1 3.8430 -2.6104 -2.7421 35 1 0.6872 -2.1467 1.9081 36 1 1.6306 -2.6217 0.4754 37 1 2.4119 -2.5547 2.0734 38 1 1.5129 -2.0397 3.3620 39 1 2.1767 -3.1356 5.4598 40 1 4.2201 -2.4316 6.6306 41 1 8.2710 1.9960 8.3111 42 1 4.9556 0.5045 3.6064 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135607862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:20 Heat of formation + Delta-G solvation = -24.961401 kcal Electronic energy + Delta-G solvation = -24998.099695 eV Core-core repulsion = 21390.175920 eV Total energy + Delta-G solvation = -3607.923775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.46387 -38.04036 -36.55272 -35.79548 -33.14020 -32.47344 -30.63620 -30.22519 -29.25528 -27.69520 -27.30187 -25.53153 -23.97076 -22.34289 -21.28473 -19.53804 -18.06674 -17.66759 -17.08719 -16.76027 -16.11206 -15.84175 -15.49131 -14.97189 -14.82455 -14.80245 -14.36172 -14.22709 -13.80709 -13.45520 -13.37664 -13.35964 -13.21403 -13.00324 -12.76981 -12.67597 -12.55476 -12.31842 -12.03311 -11.83506 -11.31966 -11.20269 -11.11867 -11.04858 -11.03713 -10.65442 -10.29675 -9.92609 -9.74985 -9.11767 -8.94925 -8.92487 -8.56994 -8.37717 -7.98768 -6.68255 -6.25300 -3.99246 1.20682 1.28376 1.67659 2.42395 2.77772 2.95401 3.23409 3.27311 3.29659 3.49571 3.61425 4.06613 4.26711 4.34341 4.61249 4.72083 4.78258 4.83314 4.89739 4.95601 5.11025 5.12075 5.14866 5.23617 5.29738 5.31407 5.38327 5.50335 5.51789 5.60922 5.69441 5.77678 5.83465 5.89762 6.00286 6.27688 6.35741 6.59772 6.66240 6.94942 7.19879 7.28366 7.60989 8.20552 8.36039 9.20774 10.81337 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.002976 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.289353 B = 9404.900400 C = 9787.522486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.158 3.842 3 H 0.107 0.893 4 C -0.464 4.464 5 S 1.247 4.753 6 C -0.499 4.499 7 O -0.830 6.830 8 N -0.619 5.619 9 C 0.058 3.942 10 C 0.558 3.442 11 O -0.518 6.518 12 C -0.153 4.153 13 C -0.107 4.107 14 C -0.143 4.143 15 C -0.055 4.055 16 C -0.106 4.106 17 S -0.035 6.035 18 C -0.520 4.520 19 H 0.075 0.925 20 C 0.074 3.926 21 N -0.871 5.871 22 Si 0.920 3.080 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.021 4.021 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.139 0.861 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.270 0.730 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.657 -14.266 -16.528 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.125 0.875 4 C -0.601 4.601 5 S 1.444 4.556 6 C -0.656 4.656 7 O -0.825 6.825 8 N -0.355 5.355 9 C -0.084 4.084 10 C 0.348 3.652 11 O -0.394 6.394 12 C -0.158 4.158 13 C -0.125 4.125 14 C -0.163 4.163 15 C -0.076 4.076 16 C -0.217 4.217 17 S 0.199 5.801 18 C -0.667 4.667 19 H 0.093 0.907 20 C -0.135 4.135 21 N -0.506 5.506 22 Si 0.746 3.254 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.042 4.042 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.156 0.844 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.080 0.920 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.500 -13.576 -15.964 24.401 hybrid contribution -2.650 2.267 -1.280 3.715 sum -15.150 -11.309 -17.244 25.589 Atomic orbital electron populations 1.22095 0.94088 1.02487 1.02625 1.20530 0.94659 0.97749 0.81668 0.87525 1.28074 1.22076 1.07139 1.02786 1.71185 0.86200 0.98157 1.00092 1.27758 1.08662 1.10902 1.18280 1.93213 1.72506 1.35408 1.81400 1.47895 1.52097 1.12758 1.22748 1.22483 1.01572 0.81606 1.02742 1.18680 0.77398 0.85756 0.83362 1.90856 1.53527 1.18206 1.76773 1.19760 0.99156 1.00315 0.96524 1.21883 0.99571 0.94835 0.96242 1.21090 0.97911 1.01411 0.95871 1.21968 0.92520 0.94865 0.98282 1.22831 1.03114 0.98150 0.97590 1.83571 1.04757 1.41570 1.50189 1.22798 0.96245 1.17072 1.30598 0.90660 1.24985 0.94638 0.97377 0.96491 1.69974 1.02492 1.39067 1.39067 0.86193 0.78509 0.81037 0.79689 1.19834 1.20758 1.19764 1.21943 0.93558 0.96131 0.92588 0.91635 0.91934 0.91776 0.86168 0.88539 0.90427 0.87649 0.87136 0.92053 0.91138 0.88319 0.84401 0.85896 0.85196 0.92023 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.19 37.16 0.34 -0.84 16 2 C 0.16 1.61 2.69 -67.93 -0.18 1.43 16 3 H 0.11 1.52 6.91 -51.93 -0.36 1.16 16 4 C -0.46 -3.47 5.26 37.15 0.20 -3.27 16 5 S 1.25 12.35 13.38 -107.50 -1.44 10.91 16 6 C -0.50 -3.50 10.74 101.05 1.09 -2.42 16 7 O -0.83 -14.65 18.14 -35.23 -0.64 -15.29 16 8 N -0.62 -6.54 2.30 -175.04 -0.40 -6.94 16 9 C 0.06 0.35 7.78 59.85 0.47 0.82 16 10 C 0.56 8.70 7.49 -12.32 -0.09 8.61 16 11 O -0.52 -10.56 15.94 5.32 0.08 -10.48 16 12 C -0.15 -2.42 5.49 -105.00 -0.58 -3.00 16 13 C -0.11 -1.31 7.53 -39.12 -0.29 -1.61 16 14 C -0.14 -1.86 10.02 -39.68 -0.40 -2.26 16 15 C -0.06 -0.94 9.79 -39.25 -0.38 -1.32 16 16 C -0.11 -2.20 5.45 -38.99 -0.21 -2.41 16 17 S -0.04 -0.90 21.41 -107.50 -2.30 -3.20 16 18 C -0.52 -14.74 9.46 30.91 0.29 -14.45 16 19 H 0.08 2.12 7.79 -52.49 -0.41 1.71 16 20 C 0.07 2.09 5.49 -17.46 -0.10 2.00 16 21 N -0.87 -25.58 13.22 55.49 0.73 -24.85 16 22 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.02 -0.41 9.34 -38.92 -0.36 -0.77 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.12 0.45 6.70 -51.93 -0.35 0.11 16 31 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.10 0.76 8.14 -51.92 -0.42 0.33 16 34 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.29 7.13 -51.93 -0.37 -0.08 16 36 H 0.07 0.21 6.46 -51.93 -0.34 -0.13 16 37 H 0.10 0.62 5.12 -51.93 -0.27 0.35 16 38 H 0.14 1.16 4.43 -52.48 -0.23 0.93 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.14 2.97 7.84 -52.49 -0.41 2.56 16 LS Contribution 374.31 15.07 5.64 5.64 Total: -1.00 -38.73 374.31 -9.21 -47.94 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -5.65 Total: -0.96 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -0.22 Total: -19.49 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.33 Total: -31.79 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.55 Total: -25.77 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 11.45 SS G_CDS: -3.74 Total: 7.71 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.73 -9.21 -47.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135607862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.976 kcal (2) G-P(sol) polarization free energy of solvation -38.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds