Wall clock time and date at job start Tue Mar 31 2020 23:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47162 * 2 1 4 4 C 1.50695 * 109.47151 * 239.99319 * 2 1 3 5 5 H 1.07997 * 120.00425 * 239.99760 * 4 2 1 6 6 C 1.37875 * 119.99547 * 60.00269 * 4 2 1 7 7 N 1.31510 * 120.00611 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99876 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47089 * 270.00137 * 8 6 4 10 10 H 1.48503 * 109.47207 * 29.99662 * 8 6 4 11 11 H 1.48498 * 109.47232 * 149.99979 * 8 6 4 12 12 N 1.46900 * 109.46792 * 119.99554 * 2 1 3 13 13 C 1.46903 * 110.99784 * 176.04872 * 12 2 1 14 14 C 1.46901 * 111.00088 * 300.00116 * 12 2 1 15 15 C 1.50707 * 109.46987 * 170.00283 * 14 12 2 16 16 O 1.21290 * 119.99932 * 0.02562 * 15 14 12 17 17 N 1.34773 * 119.99742 * 179.97438 * 15 14 12 18 18 C 1.39979 * 119.99931 * 174.45568 * 17 15 14 19 19 C 1.38889 * 120.05431 * 334.73698 * 18 17 15 20 20 C 1.38090 * 119.94189 * 179.97438 * 19 18 17 21 21 C 1.38409 * 120.05420 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 119.94100 * 179.97438 * 21 20 19 23 23 C 1.38363 * 120.11852 * 359.97438 * 21 20 19 24 24 C 1.38132 * 120.05159 * 359.74767 * 23 21 20 25 25 N 1.48023 * 120.02558 * 180.27500 * 24 23 21 26 26 O 1.21802 * 119.99972 * 5.17072 * 25 24 23 27 27 O 1.21800 * 120.00026 * 185.17163 * 25 24 23 28 28 H 1.08999 * 109.47034 * 60.00386 * 1 2 3 29 29 H 1.09005 * 109.46597 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47037 * 299.99759 * 1 2 3 31 31 H 0.97000 * 120.00617 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47229 * 60.00216 * 13 12 2 33 33 H 1.08999 * 109.47269 * 179.97438 * 13 12 2 34 34 H 1.09000 * 109.46883 * 299.99620 * 13 12 2 35 35 H 1.09001 * 109.47339 * 289.99894 * 14 12 2 36 36 H 1.08995 * 109.47196 * 50.00507 * 14 12 2 37 37 H 0.97000 * 120.00514 * 354.46061 * 17 15 14 38 38 H 1.08002 * 120.03230 * 0.02562 * 19 18 17 39 39 H 1.07999 * 119.96925 * 180.02562 * 20 19 18 40 40 H 1.07994 * 119.96790 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9429 0.8294 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 3.6306 -0.5443 -4.4117 10 1 2.4881 -2.5656 -3.7120 11 1 1.3445 -0.9493 -5.1121 12 7 2.0197 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1872 14 6 1.5486 -0.0262 2.4211 15 6 1.8579 -0.8909 3.6160 16 8 2.4163 -1.9570 3.4649 17 7 1.5150 -0.4791 4.8526 18 6 1.6961 -1.3302 5.9491 19 6 1.7145 -2.7068 5.7655 20 6 1.8939 -3.5443 6.8487 21 6 2.0548 -3.0129 8.1165 22 17 2.2794 -4.0685 9.4764 23 6 2.0369 -1.6419 8.3022 24 6 1.8635 -0.7997 7.2211 25 7 1.8505 0.6671 7.4195 26 8 2.0863 1.1351 8.5190 27 8 1.6041 1.4061 6.4832 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.7082 1.1606 -3.4844 32 1 3.9187 0.2053 1.1593 33 1 3.8210 -1.3107 2.0865 34 1 3.8030 -1.3531 0.3069 35 1 2.0518 0.9347 2.5281 36 1 0.4722 0.1325 2.3564 37 1 1.1426 0.4070 4.9829 38 1 1.5894 -3.1219 4.7763 39 1 1.9086 -4.6148 6.7064 40 1 2.1622 -1.2299 9.2925 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162002920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:09 Heat of formation + Delta-G solvation = -5.334988 kcal Electronic energy + Delta-G solvation = -27150.000616 eV Core-core repulsion = 22994.590985 eV Total energy + Delta-G solvation = -4155.409631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.58258 -41.91587 -40.22543 -38.46578 -37.92976 -37.67476 -35.96816 -34.76723 -33.24459 -31.76264 -31.05682 -29.46284 -27.73269 -26.85755 -25.45745 -24.60345 -23.79221 -22.13175 -21.14854 -20.49226 -19.97150 -19.00678 -18.83619 -18.68118 -18.16783 -17.12892 -17.02544 -16.91124 -16.29206 -15.88952 -15.60194 -15.45920 -15.27056 -14.93663 -14.43482 -14.18372 -14.08682 -13.58901 -13.50575 -13.17514 -12.96307 -12.84956 -12.82957 -12.64792 -12.58255 -12.49315 -12.46863 -12.16818 -12.09773 -11.99730 -11.92328 -11.64208 -11.01675 -10.90373 -10.73308 -10.51078 -9.60149 -9.01328 -8.11712 -6.22277 -1.43588 -0.44349 0.04519 0.08124 0.84919 1.25016 1.42492 1.44057 1.49783 1.55046 2.03565 2.43076 2.99436 3.16469 3.25280 3.41136 3.47378 3.53493 3.72039 4.05520 4.22093 4.34235 4.39068 4.49460 4.56878 4.67779 4.68722 4.82748 4.91415 4.99677 5.01948 5.11163 5.24704 5.26421 5.48889 5.70258 5.75129 5.99322 6.25109 6.30498 6.32704 6.61464 6.79404 6.90672 7.46467 8.94203 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.019637 B = 0.002448 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.514199 B =11436.501011 C =12447.627461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.217 3.783 3 H -0.026 1.026 4 C -0.520 4.520 5 H 0.056 0.944 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.277 1.277 10 H -0.271 1.271 11 H -0.282 1.282 12 N -0.530 5.530 13 C 0.040 3.960 14 C 0.030 3.970 15 C 0.528 3.472 16 O -0.511 6.511 17 N -0.663 5.663 18 C 0.228 3.772 19 C -0.135 4.135 20 C -0.014 4.014 21 C -0.061 4.061 22 Cl -0.029 7.029 23 C -0.020 4.020 24 C -0.086 4.086 25 N 0.043 4.957 26 O -0.147 6.147 27 O -0.200 6.200 28 H 0.063 0.937 29 H 0.031 0.969 30 H 0.040 0.960 31 H 0.262 0.738 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.433 0.567 38 H 0.169 0.831 39 H 0.184 0.816 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.087 -6.889 24.457 25.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.111 3.889 3 H -0.008 1.008 4 C -0.558 4.558 5 H 0.075 0.925 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.203 1.203 10 H -0.196 1.196 11 H -0.208 1.208 12 N -0.255 5.255 13 C -0.108 4.108 14 C -0.101 4.101 15 C 0.317 3.683 16 O -0.385 6.385 17 N -0.317 5.317 18 C 0.127 3.873 19 C -0.156 4.156 20 C -0.033 4.033 21 C -0.089 4.089 22 Cl 0.000 7.000 23 C -0.040 4.040 24 C -0.174 4.174 25 N 0.556 4.444 26 O -0.368 6.368 27 O -0.401 6.401 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.142 0.858 37 H 0.280 0.720 38 H 0.186 0.814 39 H 0.201 0.799 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 0.186 -8.650 24.020 25.530 hybrid contribution 0.431 1.534 -0.862 1.812 sum 0.617 -7.116 23.158 24.234 Atomic orbital electron populations 1.21721 0.96751 0.99515 1.00380 1.19124 0.93016 0.90495 0.86307 1.00839 1.21386 1.31195 1.12329 0.90930 0.92536 1.25629 0.95366 0.95769 1.01663 1.69986 1.37551 1.24034 1.24109 0.85577 0.78005 0.79035 0.79131 1.20335 1.19588 1.20794 1.61816 1.10715 1.52028 1.00896 1.22261 0.87520 0.98781 1.02244 1.22105 1.04396 0.95213 0.88381 1.21156 0.76474 0.86966 0.83698 1.90619 1.39161 1.23451 1.85294 1.44508 1.62061 1.20224 1.04900 1.17891 0.92806 0.91877 0.84746 1.21597 1.02340 0.89257 1.02377 1.21743 0.89788 1.03117 0.88674 1.20608 1.07582 0.90130 0.90608 1.98425 1.95349 1.64063 1.42182 1.20817 0.92746 0.91178 0.99238 1.20679 1.21886 0.79182 0.95648 1.43531 0.97213 1.03448 1.00209 1.94536 1.51085 1.79353 1.11795 1.94315 1.54197 1.57492 1.34069 0.91844 0.94971 0.94099 0.92862 0.97309 0.91011 0.92202 0.90810 0.85770 0.71972 0.81409 0.79852 0.80152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 8.76 71.98 0.63 -5.11 16 2 C 0.22 10.57 2.06 44.17 0.09 10.66 16 3 H -0.03 -1.38 8.14 -2.39 -0.02 -1.40 16 4 C -0.52 -28.08 7.93 25.60 0.20 -27.88 16 5 H 0.06 3.09 6.39 -2.91 -0.02 3.07 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -51.30 11.32 21.45 0.24 -51.06 16 8 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 N -0.53 -21.96 4.36 -906.02 -3.95 -25.91 16 13 C 0.04 1.61 8.88 127.69 1.13 2.75 16 14 C 0.03 0.96 5.27 85.56 0.45 1.41 16 15 C 0.53 15.23 7.32 87.66 0.64 15.87 16 16 O -0.51 -16.94 11.52 -3.06 -0.04 -16.98 16 17 N -0.66 -15.55 4.96 -303.47 -1.51 -17.06 16 18 C 0.23 4.87 6.41 38.14 0.24 5.11 16 19 C -0.13 -2.54 8.71 22.39 0.20 -2.34 16 20 C -0.01 -0.18 9.82 22.28 0.22 0.04 16 21 C -0.06 -0.77 6.32 22.34 0.14 -0.63 16 22 Cl -0.03 -0.32 28.95 -2.72 -0.08 -0.40 16 23 C -0.02 -0.29 9.33 22.27 0.21 -0.08 16 24 C -0.09 -1.70 6.86 36.49 0.25 -1.45 16 25 N 0.04 1.00 4.45 -46.18 -0.21 0.80 16 26 O -0.15 -3.43 18.46 18.88 0.35 -3.09 16 27 O -0.20 -4.97 15.81 18.89 0.30 -4.67 16 28 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 29 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.04 1.55 6.20 -2.39 -0.01 1.53 16 31 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 32 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.07 2.68 5.82 -2.39 -0.01 2.66 16 34 H 0.06 2.60 6.23 -2.39 -0.01 2.58 16 35 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 36 H 0.12 3.64 5.83 -2.39 -0.01 3.63 16 37 H 0.43 9.31 5.75 -92.71 -0.53 8.78 16 38 H 0.17 3.71 5.82 -2.91 -0.02 3.70 16 39 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.18 2.04 7.62 -2.91 -0.02 2.02 16 Total: -1.00 -62.58 348.36 2.58 -60.00 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.59 Total: 13.59 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 4.86 Total: -0.41 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -5.42 Total: -93.23 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: 0.61 Total: -24.73 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.40 kcal Total: -62.58 2.58 -60.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162002920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.666 kcal (2) G-P(sol) polarization free energy of solvation -62.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds