Wall clock time and date at job start Wed Apr 1 2020 00:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99587 * 2 1 4 4 O 1.20819 * 120.00384 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99642 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46729 * 299.99619 * 5 3 2 7 7 C 1.52995 * 109.47078 * 59.99554 * 5 3 2 8 8 N 1.46501 * 109.47549 * 295.00109 * 7 5 3 9 9 C 1.34775 * 120.00236 * 180.02562 * 8 7 5 10 10 O 1.21284 * 119.99954 * 359.97438 * 9 8 7 11 11 C 1.50692 * 120.00072 * 180.02562 * 9 8 7 12 12 S 1.81002 * 109.47349 * 179.97438 * 11 9 8 13 13 C 1.76202 * 100.00181 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99804 * 0.02562 * 13 12 11 15 15 C 1.38793 * 119.99862 * 179.97438 * 13 12 11 16 16 N 1.31628 * 119.99952 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00302 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47619 * 89.99913 * 17 15 13 19 19 H 1.48497 * 109.47402 * 210.00067 * 17 15 13 20 20 H 1.48510 * 109.47154 * 329.99780 * 17 15 13 21 21 C 1.50696 * 109.46863 * 179.97438 * 5 3 2 22 22 C 1.38248 * 119.97128 * 119.99689 * 21 5 3 23 23 C 1.38196 * 120.02483 * 179.97438 * 22 21 5 24 24 C 1.38458 * 119.97492 * 0.02562 * 23 22 21 25 25 F 1.35104 * 120.02786 * 179.97438 * 24 23 22 26 26 C 1.38465 * 119.94675 * 0.24873 * 24 23 22 27 27 C 1.38197 * 119.97511 * 359.47283 * 26 24 23 28 28 H 1.09005 * 109.47194 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47043 * 299.99949 * 1 2 3 30 30 H 1.08997 * 109.47402 * 60.00120 * 1 2 3 31 31 H 1.08999 * 109.47150 * 55.00213 * 7 5 3 32 32 H 1.09001 * 109.47007 * 174.99863 * 7 5 3 33 33 H 0.96993 * 119.99633 * 0.02562 * 8 7 5 34 34 H 1.09001 * 109.47456 * 299.99519 * 11 9 8 35 35 H 1.09001 * 109.47358 * 59.99237 * 11 9 8 36 36 H 0.97002 * 120.00219 * 180.02562 * 16 15 13 37 37 H 1.08001 * 119.98881 * 0.02562 * 22 21 5 38 38 H 1.07995 * 120.01604 * 180.02562 * 23 22 21 39 39 H 1.08007 * 120.01064 * 179.75151 * 26 24 23 40 40 H 1.07994 * 119.98821 * 180.29814 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9563 0.7807 0.8892 7 6 4.1128 0.5816 -1.2501 8 7 3.7997 -0.8484 -1.1916 9 6 4.1866 -1.6645 -2.1920 10 8 4.7936 -1.2150 -3.1409 11 6 3.8640 -3.1352 -2.1320 12 16 4.5107 -3.9556 -3.6102 13 6 4.0075 -5.6127 -3.2854 14 1 3.4665 -5.8451 -2.3801 15 6 4.3055 -6.6190 -4.1936 16 7 3.9292 -7.8569 -3.9513 17 14 5.2407 -6.2169 -5.7599 18 1 6.6991 -6.3488 -5.5135 19 1 4.8333 -7.1569 -6.8349 20 1 4.9330 -4.8251 -6.1766 21 6 3.9935 2.7201 -0.0011 22 6 4.7639 3.2129 1.0357 23 6 5.1567 4.5379 1.0361 24 6 4.7780 5.3720 -0.0022 25 9 5.1610 6.6676 -0.0026 26 6 4.0016 4.8786 -1.0371 27 6 3.6148 3.5519 -1.0383 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 3.6544 1.0178 -2.1376 32 1 5.1936 0.7153 -1.2964 33 1 3.3140 -1.2078 -0.4328 34 1 4.3217 -3.5718 -1.2443 35 1 2.7832 -3.2686 -2.0863 36 1 4.1377 -8.5603 -4.5858 37 1 5.0595 2.5620 1.8452 38 1 5.7588 4.9226 1.8458 39 1 3.7023 5.5294 -1.8455 40 1 3.0134 3.1657 -1.8479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192711895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:18 Heat of formation + Delta-G solvation = -165.676984 kcal Electronic energy + Delta-G solvation = -26254.514997 eV Core-core repulsion = 22074.276160 eV Total energy + Delta-G solvation = -4180.238837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.93756 -42.02155 -40.51872 -40.01675 -37.55630 -36.60920 -34.64109 -33.82202 -32.16256 -31.16618 -29.58427 -28.26320 -27.79780 -25.36586 -24.11814 -23.42988 -21.80901 -21.42211 -19.89858 -18.79774 -18.71190 -18.13943 -17.89741 -17.68927 -17.14461 -17.06866 -16.71702 -16.61487 -16.57429 -16.19716 -15.63898 -15.14803 -15.03157 -14.92466 -14.76632 -14.49817 -14.31966 -14.24655 -13.99019 -13.46457 -13.31426 -13.23621 -13.05607 -12.98646 -12.83837 -12.76452 -12.55412 -11.99198 -11.84442 -11.80138 -11.55749 -11.14230 -11.01355 -10.48833 -10.16504 -10.07815 -9.68604 -8.95381 -8.48567 -6.18507 -0.01019 0.25867 1.00884 1.06136 1.33664 1.49068 1.56482 1.60523 1.65129 2.19591 2.27743 2.60689 2.75428 2.89870 3.21624 3.31265 3.52260 3.69939 3.79982 3.93315 3.95598 4.02749 4.26616 4.29755 4.30170 4.34883 4.37024 4.54355 4.59438 4.71588 4.76140 4.89504 4.93302 5.12584 5.18722 5.32410 5.34171 5.40004 5.74026 5.85106 6.15244 6.46200 6.63362 6.97065 7.21322 8.63603 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.002324 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.008979 B =12046.092314 C =13078.718984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.357 6.357 3 C 0.465 3.535 4 O -0.521 6.521 5 C -0.036 4.036 6 H 0.163 0.837 7 C 0.135 3.865 8 N -0.709 5.709 9 C 0.539 3.461 10 O -0.562 6.562 11 C -0.110 4.110 12 S -0.178 6.178 13 C -0.525 4.525 14 H 0.064 0.936 15 C 0.044 3.956 16 N -0.917 5.917 17 Si 0.913 3.087 18 H -0.263 1.263 19 H -0.262 1.262 20 H -0.236 1.236 21 C -0.097 4.097 22 C -0.066 4.066 23 C -0.156 4.156 24 C 0.087 3.913 25 F -0.148 7.148 26 C -0.164 4.164 27 C -0.067 4.067 28 H 0.126 0.874 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.420 0.580 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.276 0.724 37 H 0.171 0.829 38 H 0.159 0.841 39 H 0.143 0.857 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.445 24.221 14.677 28.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.273 6.273 3 C 0.308 3.692 4 O -0.409 6.409 5 C -0.055 4.055 6 H 0.181 0.819 7 C 0.011 3.989 8 N -0.364 5.364 9 C 0.324 3.676 10 O -0.440 6.440 11 C -0.261 4.261 12 S 0.049 5.951 13 C -0.673 4.673 14 H 0.082 0.918 15 C -0.161 4.161 16 N -0.556 5.556 17 Si 0.735 3.265 18 H -0.187 1.187 19 H -0.186 1.186 20 H -0.160 1.160 21 C -0.098 4.098 22 C -0.083 4.083 23 C -0.174 4.174 24 C 0.068 3.932 25 F -0.127 7.127 26 C -0.183 4.183 27 C -0.085 4.085 28 H 0.144 0.856 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.259 0.741 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.085 0.915 37 H 0.188 0.812 38 H 0.177 0.823 39 H 0.161 0.839 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.698 25.127 13.073 28.375 hybrid contribution -1.059 -0.663 0.555 1.367 sum -2.757 24.463 13.627 28.138 Atomic orbital electron populations 1.23518 0.74676 1.05563 1.02467 1.86432 1.24938 1.32471 1.83475 1.23766 0.92053 0.81534 0.71858 1.90700 1.67492 1.37082 1.45651 1.20201 0.87196 0.94978 1.03079 0.81948 1.21297 1.02081 0.79665 0.95893 1.45716 1.59110 1.07691 1.23931 1.19898 0.78056 0.87552 0.82059 1.90707 1.41564 1.77260 1.34454 1.23259 1.06167 0.94241 1.02445 1.84739 1.76595 1.04905 1.28902 1.22464 1.42105 0.92510 1.10234 0.91755 1.25552 0.95566 0.93997 1.00964 1.70015 1.46392 1.01030 1.38114 0.85880 0.79880 0.80844 0.79850 1.18738 1.18632 1.16022 1.19216 1.00829 0.93093 0.96615 1.21225 0.94747 0.94805 0.97548 1.21397 1.03003 0.94112 0.98922 1.18050 0.99008 0.78741 0.97450 1.91486 1.89592 1.35010 1.96627 1.21253 1.00483 0.96974 0.99553 1.20919 0.96892 0.92673 0.98064 0.85627 0.91294 0.92494 0.91893 0.88728 0.74120 0.86482 0.86786 0.91460 0.81162 0.82331 0.83929 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.36 -5.50 8.56 -51.44 -0.44 -5.94 16 3 C 0.46 7.81 7.12 71.24 0.51 8.32 16 4 O -0.52 -11.64 14.86 21.99 0.33 -11.31 16 5 C -0.04 -0.43 2.54 -12.29 -0.03 -0.47 16 6 H 0.16 0.86 7.88 -2.39 -0.02 0.84 16 7 C 0.13 2.33 4.79 86.38 0.41 2.74 16 8 N -0.71 -14.43 5.06 -463.07 -2.34 -16.77 16 9 C 0.54 16.92 7.85 87.65 0.69 17.61 16 10 O -0.56 -22.46 15.86 -3.04 -0.05 -22.51 16 11 C -0.11 -3.87 6.16 71.23 0.44 -3.43 16 12 S -0.18 -8.69 18.55 -56.49 -1.05 -9.73 16 13 C -0.53 -29.79 10.04 67.95 0.68 -29.11 16 14 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 15 C 0.04 2.57 5.50 84.86 0.47 3.03 16 16 N -0.92 -55.05 13.97 21.65 0.30 -54.74 16 17 Si 0.91 44.33 27.74 68.60 1.90 46.23 16 18 H -0.26 -12.44 7.11 99.48 0.71 -11.74 16 19 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 20 H -0.24 -11.43 6.74 99.48 0.67 -10.76 16 21 C -0.10 -1.34 4.40 -19.86 -0.09 -1.43 16 22 C -0.07 -0.68 9.67 22.26 0.22 -0.47 16 23 C -0.16 -1.94 10.03 22.31 0.22 -1.72 16 24 C 0.09 1.46 7.30 22.38 0.16 1.63 16 25 F -0.15 -2.81 17.27 44.97 0.78 -2.04 16 26 C -0.16 -2.79 10.03 22.31 0.22 -2.56 16 27 C -0.07 -1.14 7.98 22.26 0.18 -0.97 16 28 H 0.13 1.07 8.14 -2.38 -0.02 1.06 16 29 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 31 H 0.06 1.29 7.56 -2.39 -0.02 1.27 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.42 6.34 6.94 -92.71 -0.64 5.70 16 34 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 35 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 36 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.17 0.58 7.94 -2.91 -0.02 0.55 16 38 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 39 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 40 H 0.13 2.20 7.57 -2.91 -0.02 2.18 16 Total: -1.00 -77.15 365.96 5.11 -72.05 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.40 Total: 10.00 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.28 Total: -5.23 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -2.04 Total: -71.52 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -0.16 Total: -39.76 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.90 Total: 46.23 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.05 Total: -9.73 kcal Total: -77.15 5.11 -72.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192711895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.631 kcal (2) G-P(sol) polarization free energy of solvation -77.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds