Wall clock time and date at job start Tue Mar 31 2020 23:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47642 * 2 1 4 4 C 1.46504 * 119.99807 * 274.85071 * 3 2 1 5 5 C 1.50701 * 109.47025 * 263.23692 * 4 3 2 6 6 H 1.08001 * 119.99934 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99898 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00157 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99847 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46975 * 90.00189 * 9 7 5 11 11 H 1.48503 * 109.47044 * 209.99729 * 9 7 5 12 12 H 1.48492 * 109.47519 * 330.00072 * 9 7 5 13 13 C 1.34780 * 120.00141 * 94.84644 * 3 2 1 14 14 O 1.21365 * 119.99756 * 354.70563 * 13 3 2 15 15 C 1.49324 * 119.99941 * 174.70095 * 13 3 2 16 16 O 1.21397 * 119.99825 * 0.53464 * 15 13 3 17 17 N 1.34771 * 120.00194 * 180.53329 * 15 13 3 18 18 C 1.39948 * 120.00418 * 185.68724 * 17 15 13 19 19 C 1.39366 * 120.43098 * 22.57424 * 18 17 15 20 20 C 1.38346 * 118.43438 * 180.26825 * 19 18 17 21 21 C 1.38900 * 119.21690 * 359.72713 * 20 19 18 22 22 O 1.35732 * 119.59043 * 179.97438 * 21 20 19 23 23 C 1.42902 * 116.99308 * 180.02562 * 22 21 20 24 24 N 1.32246 * 120.80784 * 0.02562 * 21 20 19 25 25 C 1.32009 * 121.70913 * 0.02562 * 24 21 20 26 26 Cl 1.73602 * 119.64913 * 180.02562 * 25 24 21 27 27 H 1.09006 * 109.47270 * 59.99853 * 1 2 3 28 28 H 1.08995 * 109.47694 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46846 * 300.00270 * 1 2 3 30 30 H 1.08998 * 109.46993 * 239.99455 * 2 1 3 31 31 H 1.09006 * 109.47270 * 120.00147 * 2 1 3 32 32 H 1.09003 * 109.46891 * 23.23583 * 4 3 2 33 33 H 1.08998 * 109.47115 * 143.23299 * 4 3 2 34 34 H 0.96993 * 119.99848 * 179.97438 * 8 7 5 35 35 H 0.97002 * 120.00107 * 5.68756 * 17 15 13 36 36 H 1.08003 * 120.78838 * 359.97355 * 19 18 17 37 37 H 1.07992 * 120.39464 * 179.70550 * 20 19 18 38 38 H 1.09005 * 109.47170 * 179.97438 * 23 22 21 39 39 H 1.09005 * 109.46701 * 299.99102 * 23 22 21 40 40 H 1.08991 * 109.47728 * 59.99685 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1615 2.1075 -1.2642 5 6 3.5909 2.0221 -1.7337 6 1 4.3200 1.4812 -1.1486 7 6 3.9682 2.6352 -2.9095 8 7 5.2158 2.5611 -3.3190 9 14 2.7073 3.5713 -3.9211 10 1 2.6747 4.9896 -3.4821 11 1 3.0780 3.5062 -5.3576 12 1 1.3668 2.9625 -3.7277 13 6 2.3361 1.9837 1.1630 14 8 2.1274 1.4179 2.2163 15 6 2.9447 3.3472 1.1556 16 8 3.1445 3.9170 0.1025 17 7 3.2723 3.9453 2.3181 18 6 3.7313 5.2673 2.3199 19 6 3.4277 6.1214 1.2613 20 6 3.9074 7.4184 1.3029 21 6 4.6655 7.8263 2.3930 22 8 5.1403 9.0969 2.4414 23 6 5.9139 9.4570 3.5876 24 7 4.9311 6.9915 3.3837 25 6 4.4917 5.7466 3.3787 26 17 4.8718 4.6965 4.7079 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8932 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5057 1.6646 -2.0139 33 1 1.8896 3.1525 -1.1156 34 1 5.4811 2.9922 -4.1464 35 1 3.1900 3.4594 3.1536 36 1 2.8361 5.7775 0.4257 37 1 3.6952 8.1055 0.4973 38 1 6.2311 10.4962 3.5001 39 1 5.3094 9.3358 4.4866 40 1 6.7916 8.8138 3.6504 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275712928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:14 Heat of formation + Delta-G solvation = -46.263094 kcal Electronic energy + Delta-G solvation = -27723.583753 eV Core-core repulsion = 23566.399346 eV Total energy + Delta-G solvation = -4157.184407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18783 -40.21646 -38.67895 -37.69936 -36.64641 -35.97780 -34.54916 -32.64432 -32.32975 -30.77408 -29.79633 -27.80535 -27.35760 -25.15132 -23.80164 -23.23326 -22.73814 -21.41650 -19.60227 -18.61287 -17.88632 -17.35592 -17.05730 -16.74020 -16.19819 -16.11718 -15.48580 -15.23515 -14.94495 -14.53930 -14.38350 -14.15976 -13.90668 -13.62629 -13.31511 -13.25405 -12.99415 -12.55023 -12.25191 -12.14250 -12.09528 -11.96417 -11.81675 -11.42972 -11.33303 -11.09398 -10.83420 -10.73896 -10.56577 -10.46097 -10.24604 -10.06809 -9.61789 -9.57942 -8.83535 -8.57199 -8.06854 -7.90117 -6.10916 -4.08823 0.76218 1.05874 1.60794 1.94551 2.54830 2.99620 3.26119 3.31003 3.33567 3.43871 3.74460 3.82828 4.28802 4.37010 4.62423 4.69096 5.02321 5.07592 5.16744 5.17972 5.22421 5.38995 5.43688 5.53985 5.60505 5.65895 5.78828 6.03705 6.07469 6.14254 6.37938 6.40960 6.45505 6.79061 6.97675 7.03953 7.23694 7.47121 7.50465 7.77606 8.03318 8.36585 8.49604 8.89338 9.48672 11.02446 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.004159 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.596777 B = 6730.935573 C = 8508.558628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.110 3.890 3 N -0.553 5.553 4 C 0.199 3.801 5 C -0.517 4.517 6 H 0.072 0.928 7 C 0.081 3.919 8 N -0.895 5.895 9 Si 0.874 3.126 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.512 3.488 14 O -0.551 6.551 15 C 0.495 3.505 16 O -0.434 6.434 17 N -0.648 5.648 18 C 0.104 3.896 19 C -0.045 4.045 20 C -0.155 4.155 21 C 0.312 3.688 22 O -0.304 6.304 23 C 0.039 3.961 24 N -0.514 5.514 25 C 0.175 3.825 26 Cl -0.025 7.025 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.054 0.946 34 H 0.264 0.736 35 H 0.421 0.579 36 H 0.178 0.822 37 H 0.154 0.846 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.151 7.603 12.129 15.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.283 5.283 4 C 0.079 3.921 5 C -0.555 4.555 6 H 0.090 0.910 7 C -0.122 4.122 8 N -0.534 5.534 9 Si 0.701 3.299 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.294 3.706 14 O -0.432 6.432 15 C 0.277 3.723 16 O -0.302 6.302 17 N -0.296 5.296 18 C 0.004 3.996 19 C -0.073 4.073 20 C -0.176 4.176 21 C 0.132 3.868 22 O -0.211 6.211 23 C -0.056 4.056 24 N -0.240 5.240 25 C 0.009 3.991 26 Cl 0.004 6.996 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.260 0.740 36 H 0.195 0.805 37 H 0.172 0.828 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.533 8.108 12.295 15.410 hybrid contribution -0.570 -0.092 -0.524 0.780 sum -5.103 8.016 11.771 15.128 Atomic orbital electron populations 1.22120 0.96107 1.01859 1.02207 1.21493 0.93926 0.82241 1.03586 1.47948 1.59296 1.13620 1.07438 1.20306 0.98903 0.92982 0.79915 1.21079 0.92746 1.34316 1.07388 0.90984 1.24732 0.94984 0.95359 0.97130 1.69886 1.16432 1.44206 1.22853 0.86899 0.82072 0.81343 0.79591 1.19776 1.21304 1.19195 1.19548 0.80190 0.86234 0.84611 1.90683 1.55598 1.66101 1.30771 1.20451 0.80392 0.88089 0.83376 1.90875 1.46481 1.63841 1.29051 1.43186 1.64402 1.10755 1.11300 1.18118 0.99138 0.86094 0.96224 1.21890 0.97005 0.90464 0.97898 1.21145 1.00821 0.97025 0.98596 1.19511 0.92857 0.84547 0.89893 1.86270 1.66687 1.23712 1.44414 1.22866 0.95036 1.00717 0.86976 1.66391 1.25491 1.03397 1.28709 1.20740 0.97393 0.89930 0.91028 1.98406 1.93199 1.62148 1.45862 0.92382 0.91763 0.92559 0.89595 0.90117 0.94984 0.92801 0.92590 0.74026 0.80476 0.82833 0.88616 0.92298 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 10.24 37.15 0.38 -1.83 16 2 C 0.11 1.79 6.11 -4.05 -0.02 1.77 16 3 N -0.55 -10.84 2.48 -175.61 -0.43 -11.28 16 4 C 0.20 4.39 3.86 -5.19 -0.02 4.37 16 5 C -0.52 -13.75 8.31 -34.44 -0.29 -14.04 16 6 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 7 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 8 N -0.90 -26.64 13.96 55.43 0.77 -25.87 16 9 Si 0.87 20.47 27.47 -169.99 -4.67 15.80 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 13 C 0.51 9.95 7.67 -11.64 -0.09 9.86 16 14 O -0.55 -10.71 16.04 5.48 0.09 -10.62 16 15 C 0.49 9.37 7.55 -11.65 -0.09 9.28 16 16 O -0.43 -9.25 9.20 5.46 0.05 -9.20 16 17 N -0.65 -10.39 5.21 -10.15 -0.05 -10.45 16 18 C 0.10 1.62 6.48 -83.49 -0.54 1.08 16 19 C -0.05 -0.69 8.84 -39.12 -0.35 -1.04 16 20 C -0.15 -2.10 10.03 -39.30 -0.39 -2.50 16 21 C 0.31 4.37 7.49 -17.13 -0.13 4.24 16 22 O -0.30 -3.80 10.48 -18.90 -0.20 -4.00 16 23 C 0.04 0.37 10.38 101.05 1.05 1.42 16 24 N -0.51 -7.50 9.18 -10.27 -0.09 -7.59 16 25 C 0.17 2.58 7.29 -17.23 -0.13 2.46 16 26 Cl -0.02 -0.32 27.90 -51.86 -1.45 -1.77 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.38 8.11 -51.93 -0.42 0.95 16 31 H 0.08 1.29 7.36 -51.93 -0.38 0.91 16 32 H 0.03 0.69 7.08 -51.93 -0.37 0.32 16 33 H 0.05 1.20 5.29 -51.93 -0.27 0.93 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.42 6.15 7.18 -40.82 -0.29 5.86 16 36 H 0.18 2.85 5.74 -52.48 -0.30 2.55 16 37 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 40 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 LS Contribution 356.33 15.07 5.37 5.37 Total: -1.00 -31.12 356.33 -5.91 -37.03 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.58 Total: 5.37 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: -0.71 Total: 17.21 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.19 Total: -55.18 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.06 Total: -23.82 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.80 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.45 Total: -1.77 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.12 -5.91 -37.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275712928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.233 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds