Wall clock time and date at job start Tue Mar 31 2020 23:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35735 * 116.99905 * 2 1 4 4 C 1.38887 * 119.59474 * 180.02562 * 3 2 1 5 5 C 1.38352 * 119.21840 * 179.74116 * 4 3 2 6 6 C 1.39360 * 118.43380 * 0.47576 * 5 4 3 7 7 N 1.39949 * 120.43470 * 179.80087 * 6 5 4 8 8 C 1.34779 * 119.99860 * 17.45789 * 7 6 5 9 9 O 1.21391 * 119.99635 * 5.51506 * 8 7 6 10 10 C 1.49333 * 119.99928 * 185.51345 * 8 7 6 11 11 O 1.21359 * 119.99666 * 6.30756 * 10 8 7 12 12 N 1.34768 * 120.00034 * 186.30813 * 10 8 7 13 13 C 1.46507 * 120.00096 * 5.41605 * 12 10 8 14 14 C 1.46502 * 120.00159 * 185.42335 * 12 10 8 15 15 H 1.09000 * 109.47037 * 359.97438 * 14 12 10 16 16 C 1.53000 * 109.47452 * 119.99534 * 14 12 10 17 17 C 1.50695 * 109.46914 * 239.99559 * 14 12 10 18 18 H 1.08005 * 120.00477 * 354.74258 * 17 14 12 19 19 C 1.37880 * 120.00161 * 174.73656 * 17 14 12 20 20 N 1.31516 * 119.99762 * 356.44195 * 19 17 14 21 21 Si 1.86793 * 120.00216 * 176.71006 * 19 17 14 22 22 H 1.48499 * 109.47543 * 264.74377 * 21 19 17 23 23 H 1.48500 * 109.47402 * 24.74378 * 21 19 17 24 24 H 1.48498 * 109.47194 * 144.74211 * 21 19 17 25 25 C 1.38897 * 119.13332 * 359.52924 * 6 5 4 26 26 Cl 1.73601 * 119.65147 * 180.25230 * 25 6 5 27 27 N 1.32005 * 120.69707 * 0.22652 * 25 6 5 28 28 H 1.08997 * 109.47019 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47528 * 300.00185 * 1 2 3 30 30 H 1.09002 * 109.47273 * 60.00017 * 1 2 3 31 31 H 1.07998 * 120.39064 * 0.02716 * 4 3 2 32 32 H 1.08002 * 120.78071 * 180.27787 * 5 4 3 33 33 H 0.96997 * 119.99973 * 197.45813 * 7 6 5 34 34 H 1.08998 * 109.47160 * 275.54767 * 13 12 10 35 35 H 1.09000 * 109.46546 * 35.54205 * 13 12 10 36 36 H 1.08995 * 109.47248 * 155.54826 * 13 12 10 37 37 H 1.09000 * 109.47461 * 178.95803 * 16 14 12 38 38 H 1.09003 * 109.47296 * 298.96551 * 16 14 12 39 39 H 1.09010 * 109.46753 * 58.96162 * 16 14 12 40 40 H 0.96999 * 120.00153 * 180.26760 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4326 1.2723 -0.0005 5 6 4.0526 2.5091 -0.0060 6 6 3.2544 3.6515 -0.0006 7 7 3.8375 4.9237 -0.0016 8 6 5.1288 5.0729 -0.3577 9 8 5.7576 4.1213 -0.7731 10 6 5.7859 6.4088 -0.2413 11 8 5.1952 7.3322 0.2795 12 7 7.0348 6.5890 -0.7147 13 6 7.7028 5.5110 -1.4482 14 6 7.7246 7.8628 -0.4955 15 1 7.0751 8.5361 0.0639 16 6 9.0097 7.6171 0.2975 17 6 8.0659 8.4844 -1.8252 18 1 7.8731 7.9432 -2.7398 19 6 8.6243 9.7441 -1.8743 20 7 8.7945 10.4316 -0.7662 21 14 9.1322 10.4773 -3.5156 22 1 10.5765 10.2206 -3.7468 23 1 8.3381 9.8526 -4.6038 24 1 8.8859 11.9416 -3.5010 25 6 1.8726 3.5109 0.0001 26 17 0.8655 4.9250 0.0001 27 7 1.3171 2.3135 0.0001 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.0206 0.3664 -0.0014 32 1 5.1298 2.5874 -0.0110 33 1 3.3123 5.6981 0.2540 34 1 8.1726 4.8273 -0.7413 35 1 6.9693 4.9690 -2.0452 36 1 8.4634 5.9348 -2.1040 37 1 9.5323 8.5623 0.4446 38 1 8.7615 7.1845 1.2667 39 1 9.6510 6.9294 -0.2539 40 1 9.1838 11.3193 -0.8011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276065008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:12 Heat of formation + Delta-G solvation = -50.811867 kcal Electronic energy + Delta-G solvation = -27054.632015 eV Core-core repulsion = 22897.250359 eV Total energy + Delta-G solvation = -4157.381656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 14.59 seconds Orbital eigenvalues (eV) -41.46994 -40.39503 -38.74396 -37.90917 -36.84747 -36.01251 -34.89893 -32.81565 -32.57980 -30.11018 -29.62168 -27.59138 -26.37454 -25.35042 -24.92496 -24.05683 -22.99378 -20.93093 -19.62772 -18.81975 -18.06985 -17.60848 -16.95001 -16.52791 -16.39195 -16.24609 -15.67202 -15.35348 -15.16333 -14.77229 -14.50780 -14.42294 -13.93515 -13.55993 -13.40509 -13.12977 -12.60535 -12.47286 -12.29833 -12.29445 -11.86429 -11.75636 -11.62640 -11.58193 -11.11805 -10.98313 -10.89586 -10.83437 -10.76492 -10.41507 -10.30138 -10.22747 -9.89993 -9.30525 -8.92619 -8.52655 -8.21275 -7.84755 -6.17546 -4.24806 0.49495 0.79909 1.40643 1.72876 2.36217 2.79625 3.22414 3.23781 3.30373 3.33116 3.56326 3.78972 4.05174 4.31982 4.38674 4.54771 4.80112 4.83851 4.98505 5.00917 5.15950 5.23807 5.39157 5.50378 5.76490 5.93797 6.12033 6.18184 6.45629 6.56987 6.63526 6.76838 6.83400 6.89914 7.11770 7.24052 7.29871 7.55926 7.62419 7.82452 7.99865 8.24305 8.48794 8.79853 9.41208 10.89615 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.002537 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.222391 B =11032.410255 C =11562.454444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.304 6.304 3 C 0.314 3.686 4 C -0.157 4.157 5 C -0.053 4.053 6 C 0.094 3.906 7 N -0.638 5.638 8 C 0.512 3.488 9 O -0.497 6.497 10 C 0.494 3.506 11 O -0.529 6.529 12 N -0.550 5.550 13 C 0.080 3.920 14 C 0.253 3.747 15 H 0.072 0.928 16 C -0.142 4.142 17 C -0.530 4.530 18 H 0.063 0.937 19 C 0.067 3.933 20 N -0.885 5.885 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.273 1.273 24 H -0.285 1.285 25 C 0.177 3.823 26 Cl -0.018 7.018 27 N -0.513 5.513 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.155 0.845 32 H 0.187 0.813 33 H 0.427 0.573 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.016 0.984 39 H 0.035 0.965 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.344 -18.254 2.340 22.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.210 6.210 3 C 0.134 3.866 4 C -0.179 4.179 5 C -0.080 4.080 6 C -0.006 4.006 7 N -0.285 5.285 8 C 0.296 3.704 9 O -0.372 6.372 10 C 0.274 3.726 11 O -0.407 6.407 12 N -0.280 5.280 13 C -0.063 4.063 14 C 0.154 3.846 15 H 0.090 0.910 16 C -0.201 4.201 17 C -0.569 4.569 18 H 0.081 0.919 19 C -0.136 4.136 20 N -0.523 5.523 21 Si 0.728 3.272 22 H -0.205 1.205 23 H -0.198 1.198 24 H -0.210 1.210 25 C 0.011 3.989 26 Cl 0.010 6.990 27 N -0.239 5.239 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.172 0.828 32 H 0.203 0.797 33 H 0.267 0.733 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.035 0.965 39 H 0.054 0.946 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.929 -18.381 2.386 22.599 hybrid contribution 0.392 1.070 -0.773 1.377 sum -12.538 -17.311 1.613 21.435 Atomic orbital electron populations 1.22896 0.77018 1.03098 1.02665 1.86273 1.23052 1.23645 1.88076 1.19582 0.89195 0.83595 0.94247 1.21183 0.91448 0.99658 1.05569 1.22164 1.03189 0.88574 0.94099 1.18227 0.90398 0.86848 1.05117 1.43267 1.12328 1.07995 1.64876 1.21083 0.81381 0.91157 0.76781 1.90581 1.63239 1.41355 1.42011 1.19454 0.83803 0.86898 0.82426 1.90755 1.63125 1.41645 1.45185 1.48279 1.12749 1.17450 1.49546 1.21968 0.98682 0.89114 0.96544 1.19208 0.90238 0.78140 0.96994 0.91033 1.22046 0.99359 1.02208 0.96480 1.21247 1.42236 1.01517 0.91874 0.91915 1.24896 0.95413 0.96429 0.96876 1.69924 1.43580 1.12094 1.26656 0.86449 0.78822 0.78456 0.83521 1.20539 1.19811 1.21044 1.20801 0.86606 0.88386 1.03079 1.98431 1.69724 1.34360 1.96470 1.66448 1.40647 0.97208 1.19566 0.88460 0.92168 0.92158 0.82751 0.79667 0.73330 0.93002 0.90793 0.90239 0.89608 0.96500 0.94580 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.30 -3.04 10.48 -18.91 -0.20 -3.24 16 3 C 0.31 3.53 7.49 -17.13 -0.13 3.40 16 4 C -0.16 -1.60 10.03 -39.30 -0.39 -1.99 16 5 C -0.05 -0.62 8.91 -39.12 -0.35 -0.97 16 6 C 0.09 1.20 6.54 -83.49 -0.55 0.65 16 7 N -0.64 -8.86 5.26 -10.15 -0.05 -8.91 16 8 C 0.51 8.18 7.56 -11.64 -0.09 8.09 16 9 O -0.50 -7.71 10.24 5.46 0.06 -7.66 16 10 C 0.49 9.76 7.72 -11.64 -0.09 9.67 16 11 O -0.53 -11.76 15.85 5.49 0.09 -11.67 16 12 N -0.55 -11.40 2.75 -175.82 -0.48 -11.88 16 13 C 0.08 1.39 8.13 59.85 0.49 1.87 16 14 C 0.25 6.17 2.50 -69.08 -0.17 5.99 16 15 H 0.07 2.00 6.90 -51.93 -0.36 1.64 16 16 C -0.14 -3.21 9.05 37.16 0.34 -2.87 16 17 C -0.53 -13.78 7.98 -34.44 -0.27 -14.05 16 18 H 0.06 1.61 7.24 -52.48 -0.38 1.23 16 19 C 0.07 1.77 5.28 -17.82 -0.09 1.68 16 20 N -0.89 -24.32 11.87 55.43 0.66 -23.66 16 21 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.18 2.21 7.29 -17.23 -0.13 2.08 16 26 Cl -0.02 -0.21 27.85 -51.86 -1.44 -1.66 16 27 N -0.51 -6.26 9.18 -10.27 -0.09 -6.35 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.19 2.19 5.39 -52.49 -0.28 1.91 16 33 H 0.43 5.77 7.10 -40.82 -0.29 5.48 16 34 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 35 H 0.07 1.21 5.99 -51.93 -0.31 0.89 16 36 H 0.08 1.41 7.02 -51.93 -0.36 1.05 16 37 H 0.09 2.11 6.62 -51.93 -0.34 1.77 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.04 0.74 7.64 -51.92 -0.40 0.35 16 40 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -29.08 354.04 -5.94 -35.03 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -4.39 Total: 4.33 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: -0.39 Total: 14.90 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.03 Total: -50.82 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.06 Total: -22.57 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.44 Total: -1.66 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.08 -5.94 -35.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276065008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.786 kcal (2) G-P(sol) polarization free energy of solvation -29.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.59 seconds