Wall clock time and date at job start Tue Mar 31 2020 23:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35735 * 116.99905 * 2 1 4 4 C 1.38887 * 119.59474 * 180.02562 * 3 2 1 5 5 C 1.38352 * 119.21840 * 179.74116 * 4 3 2 6 6 C 1.39360 * 118.43380 * 0.47576 * 5 4 3 7 7 N 1.39949 * 120.43470 * 179.80087 * 6 5 4 8 8 C 1.34779 * 119.99860 * 17.45789 * 7 6 5 9 9 O 1.21391 * 119.99635 * 5.51506 * 8 7 6 10 10 C 1.49333 * 119.99928 * 185.51345 * 8 7 6 11 11 O 1.21359 * 119.99666 * 6.30756 * 10 8 7 12 12 N 1.34768 * 120.00034 * 186.30813 * 10 8 7 13 13 C 1.46507 * 120.00096 * 5.41605 * 12 10 8 14 14 C 1.46502 * 120.00159 * 185.42335 * 12 10 8 15 15 H 1.09000 * 109.47037 * 359.97438 * 14 12 10 16 16 C 1.53000 * 109.47452 * 119.99534 * 14 12 10 17 17 C 1.50695 * 109.46914 * 239.99559 * 14 12 10 18 18 H 1.08005 * 120.00477 * 354.74258 * 17 14 12 19 19 C 1.37880 * 120.00161 * 174.73656 * 17 14 12 20 20 N 1.31516 * 119.99762 * 356.44195 * 19 17 14 21 21 Si 1.86793 * 120.00216 * 176.71006 * 19 17 14 22 22 H 1.48499 * 109.47543 * 264.74377 * 21 19 17 23 23 H 1.48500 * 109.47402 * 24.74378 * 21 19 17 24 24 H 1.48498 * 109.47194 * 144.74211 * 21 19 17 25 25 C 1.38897 * 119.13332 * 359.52924 * 6 5 4 26 26 Cl 1.73601 * 119.65147 * 180.25230 * 25 6 5 27 27 N 1.32005 * 120.69707 * 0.22652 * 25 6 5 28 28 H 1.08997 * 109.47019 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47528 * 300.00185 * 1 2 3 30 30 H 1.09002 * 109.47273 * 60.00017 * 1 2 3 31 31 H 1.07998 * 120.39064 * 0.02716 * 4 3 2 32 32 H 1.08002 * 120.78071 * 180.27787 * 5 4 3 33 33 H 0.96997 * 119.99973 * 197.45813 * 7 6 5 34 34 H 1.08998 * 109.47160 * 275.54767 * 13 12 10 35 35 H 1.09000 * 109.46546 * 35.54205 * 13 12 10 36 36 H 1.08995 * 109.47248 * 155.54826 * 13 12 10 37 37 H 1.09000 * 109.47461 * 178.95803 * 16 14 12 38 38 H 1.09003 * 109.47296 * 298.96551 * 16 14 12 39 39 H 1.09010 * 109.46753 * 58.96162 * 16 14 12 40 40 H 0.96999 * 120.00153 * 180.26760 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4326 1.2723 -0.0005 5 6 4.0526 2.5091 -0.0060 6 6 3.2544 3.6515 -0.0006 7 7 3.8375 4.9237 -0.0016 8 6 5.1288 5.0729 -0.3577 9 8 5.7576 4.1213 -0.7731 10 6 5.7859 6.4088 -0.2413 11 8 5.1952 7.3322 0.2795 12 7 7.0348 6.5890 -0.7147 13 6 7.7028 5.5110 -1.4482 14 6 7.7246 7.8628 -0.4955 15 1 7.0751 8.5361 0.0639 16 6 9.0097 7.6171 0.2975 17 6 8.0659 8.4844 -1.8252 18 1 7.8731 7.9432 -2.7398 19 6 8.6243 9.7441 -1.8743 20 7 8.7945 10.4316 -0.7662 21 14 9.1322 10.4773 -3.5156 22 1 10.5765 10.2206 -3.7468 23 1 8.3381 9.8526 -4.6038 24 1 8.8859 11.9416 -3.5010 25 6 1.8726 3.5109 0.0001 26 17 0.8655 4.9250 0.0001 27 7 1.3171 2.3135 0.0001 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.0206 0.3664 -0.0014 32 1 5.1298 2.5874 -0.0110 33 1 3.3123 5.6981 0.2540 34 1 8.1726 4.8273 -0.7413 35 1 6.9693 4.9690 -2.0452 36 1 8.4634 5.9348 -2.1040 37 1 9.5323 8.5623 0.4446 38 1 8.7615 7.1845 1.2667 39 1 9.6510 6.9294 -0.2539 40 1 9.1838 11.3193 -0.8011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276065008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:58 Heat of formation + Delta-G solvation = -71.225334 kcal Electronic energy + Delta-G solvation = -27055.517210 eV Core-core repulsion = 22897.250359 eV Total energy + Delta-G solvation = -4158.266851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 9.67 seconds Orbital eigenvalues (eV) -42.55884 -41.53024 -40.01568 -38.97246 -37.76117 -37.57131 -36.18143 -34.68325 -33.47883 -31.56230 -30.95710 -28.33971 -27.80498 -27.29651 -26.28536 -24.93785 -24.15206 -22.40100 -21.00959 -19.72495 -19.32649 -18.73074 -18.44397 -18.01533 -17.76128 -17.24223 -16.98860 -16.85346 -16.23838 -16.07631 -15.62735 -15.53659 -15.06599 -14.89710 -14.64343 -14.38798 -14.12923 -13.99182 -13.60604 -13.26137 -13.09918 -12.95456 -12.86506 -12.83145 -12.68728 -12.61223 -12.47557 -12.32532 -12.28619 -12.08149 -11.64796 -11.24594 -11.21380 -10.84716 -10.55500 -10.29798 -9.55762 -9.14435 -8.17726 -6.32091 -0.47951 -0.12913 0.43872 0.49161 1.09141 1.43403 1.45092 1.54912 1.99528 2.04161 2.35880 2.42919 2.49543 3.11712 3.15520 3.19706 3.46874 3.80745 4.02243 4.41921 4.43235 4.45814 4.47715 4.59915 4.71415 4.75825 4.78568 4.85278 4.87946 4.98618 5.11245 5.24361 5.36666 5.41648 5.62284 5.70941 5.90103 5.98337 6.07603 6.31911 6.37313 6.58166 6.73188 6.95669 7.38177 8.88923 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.002537 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.222391 B =11032.410255 C =11562.454444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.306 6.306 3 C 0.311 3.689 4 C -0.146 4.146 5 C -0.053 4.053 6 C 0.077 3.923 7 N -0.628 5.628 8 C 0.525 3.475 9 O -0.491 6.491 10 C 0.488 3.512 11 O -0.562 6.562 12 N -0.559 5.559 13 C 0.083 3.917 14 C 0.257 3.743 15 H 0.026 0.974 16 C -0.129 4.129 17 C -0.540 4.540 18 H 0.063 0.937 19 C 0.019 3.981 20 N -0.916 5.916 21 Si 0.963 3.037 22 H -0.269 1.269 23 H -0.270 1.270 24 H -0.287 1.287 25 C 0.173 3.827 26 Cl -0.017 7.017 27 N -0.523 5.523 28 H 0.128 0.872 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.184 0.816 32 H 0.187 0.813 33 H 0.427 0.573 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.028 0.972 39 H 0.052 0.948 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.492 -20.704 1.455 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.213 6.213 3 C 0.131 3.869 4 C -0.167 4.167 5 C -0.079 4.079 6 C -0.022 4.022 7 N -0.275 5.275 8 C 0.308 3.692 9 O -0.366 6.366 10 C 0.269 3.731 11 O -0.443 6.443 12 N -0.289 5.289 13 C -0.059 4.059 14 C 0.156 3.844 15 H 0.044 0.956 16 C -0.188 4.188 17 C -0.579 4.579 18 H 0.082 0.918 19 C -0.181 4.181 20 N -0.554 5.554 21 Si 0.788 3.212 22 H -0.194 1.194 23 H -0.194 1.194 24 H -0.213 1.213 25 C 0.008 3.992 26 Cl 0.011 6.989 27 N -0.249 5.249 28 H 0.146 0.854 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.201 0.799 32 H 0.204 0.796 33 H 0.267 0.733 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.098 -20.889 1.495 24.701 hybrid contribution 0.303 1.710 -0.454 1.795 sum -12.795 -19.179 1.041 23.079 Atomic orbital electron populations 1.23126 0.75607 1.05051 1.02331 1.86285 1.24445 1.22835 1.87688 1.19886 0.89800 0.83754 0.93478 1.21453 0.91259 1.00136 1.03813 1.22203 1.03106 0.88706 0.93920 1.18318 0.90704 0.86376 1.06784 1.43067 1.11394 1.08792 1.64241 1.20109 0.82076 0.89322 0.77716 1.90583 1.63379 1.40403 1.42212 1.20063 0.83405 0.88211 0.81400 1.90730 1.63848 1.43336 1.46353 1.48232 1.13337 1.17109 1.50248 1.22102 0.98742 0.88286 0.96757 1.18838 0.90195 0.79282 0.96060 0.95571 1.21846 0.98464 1.01363 0.97110 1.21514 1.41969 1.01882 0.92521 0.91850 1.25686 0.95484 0.96909 1.00028 1.70049 1.44368 1.12380 1.28593 0.85466 0.78846 0.77298 0.79561 1.19436 1.19418 1.21251 1.20823 0.86557 0.88685 1.03170 1.98430 1.69651 1.34309 1.96465 1.66472 1.41008 0.97347 1.20065 0.85443 0.92425 0.92548 0.79852 0.79633 0.73293 0.91033 0.89533 0.90797 0.92043 0.95286 0.92862 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.38 113.37 1.18 1.59 16 2 O -0.31 -5.36 10.48 -90.59 -0.95 -6.31 16 3 C 0.31 6.30 7.49 84.78 0.63 6.94 16 4 C -0.15 -2.56 10.03 22.45 0.23 -2.33 16 5 C -0.05 -1.11 8.91 22.57 0.20 -0.91 16 6 C 0.08 1.88 6.54 38.27 0.25 2.13 16 7 N -0.63 -17.07 5.26 -304.36 -1.60 -18.67 16 8 C 0.52 16.33 7.56 87.23 0.66 16.99 16 9 O -0.49 -14.30 10.24 -3.37 -0.03 -14.34 16 10 C 0.49 19.41 7.72 87.23 0.67 20.08 16 11 O -0.56 -25.84 15.85 -3.27 -0.05 -25.89 16 12 N -0.56 -23.16 2.75 -828.53 -2.28 -25.44 16 13 C 0.08 2.75 8.13 127.77 1.04 3.79 16 14 C 0.26 12.77 2.50 44.24 0.11 12.88 16 15 H 0.03 1.54 6.90 -2.39 -0.02 1.52 16 16 C -0.13 -5.85 9.05 71.98 0.65 -5.20 16 17 C -0.54 -28.33 7.98 25.60 0.20 -28.12 16 18 H 0.06 3.24 7.24 -2.91 -0.02 3.22 16 19 C 0.02 1.02 5.28 84.66 0.45 1.47 16 20 N -0.92 -51.38 11.87 21.45 0.25 -51.13 16 21 Si 0.96 41.99 29.54 68.60 2.03 44.02 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 25 C 0.17 4.13 7.29 84.82 0.62 4.75 16 26 Cl -0.02 -0.39 27.85 -2.72 -0.08 -0.46 16 27 N -0.52 -11.97 9.18 -299.24 -2.75 -14.72 16 28 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.76 8.10 -2.38 -0.02 0.74 16 30 H 0.06 0.76 8.10 -2.39 -0.02 0.74 16 31 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.19 3.94 5.39 -2.91 -0.02 3.93 16 33 H 0.43 11.56 7.10 -92.71 -0.66 10.90 16 34 H 0.07 2.09 8.09 -2.39 -0.02 2.07 16 35 H 0.09 2.65 5.99 -2.39 -0.01 2.64 16 36 H 0.07 2.53 7.02 -2.39 -0.02 2.51 16 37 H 0.06 3.08 6.62 -2.39 -0.02 3.06 16 38 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.05 2.17 7.64 -2.38 -0.02 2.15 16 40 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -63.00 354.04 1.89 -61.11 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.45 Total: 17.77 kcal Atomic # 6 Polarization: 27.15 SS G_CDS: 6.89 Total: 34.04 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -6.37 Total: -109.95 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -1.04 Total: -46.54 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.46 kcal Total: -63.00 1.89 -61.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276065008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.111 kcal (2) G-P(sol) polarization free energy of solvation -63.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.68 seconds