Wall clock time and date at job start Wed Apr 1 2020 00:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 120.00000 * 2 1 4 4 N 1.46492 * 109.47449 * 235.00493 * 3 2 1 5 5 C 1.46494 * 120.00411 * 73.49385 * 4 3 2 6 6 C 1.50704 * 109.47189 * 89.99911 * 5 4 3 7 7 H 1.07991 * 119.99929 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99821 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99619 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00099 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47245 * 89.99765 * 10 8 6 12 12 H 1.48503 * 109.46982 * 209.99477 * 10 8 6 13 13 H 1.48496 * 109.47352 * 329.99521 * 10 8 6 14 14 C 1.34780 * 120.00114 * 253.49373 * 4 3 2 15 15 O 1.21565 * 120.00309 * 181.90186 * 14 4 3 16 16 C 1.47700 * 119.99756 * 1.90494 * 14 4 3 17 17 C 1.39655 * 120.16465 * 26.13898 * 16 14 4 18 18 C 1.37863 * 119.87617 * 179.72248 * 17 16 14 19 19 S 1.76199 * 119.88848 * 180.27182 * 18 17 16 20 20 C 1.81400 * 104.45118 * 270.27810 * 19 18 17 21 21 O 1.42094 * 104.28123 * 26.35435 * 19 18 17 22 22 O 1.42109 * 104.27479 * 154.21011 * 19 18 17 23 23 C 1.38450 * 120.21640 * 0.55219 * 18 17 16 24 24 C 1.38203 * 120.33989 * 359.72245 * 23 18 17 25 25 C 1.38313 * 120.11946 * 359.97438 * 24 23 18 26 26 F 1.35103 * 120.11300 * 179.97438 * 25 24 23 27 27 H 1.07997 * 120.00056 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.00255 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00056 * 180.02562 * 2 1 3 30 30 H 1.09010 * 109.47034 * 355.00662 * 3 2 1 31 31 H 1.08996 * 109.46893 * 114.99971 * 3 2 1 32 32 H 1.09008 * 109.47483 * 210.00332 * 5 4 3 33 33 H 1.08997 * 109.47123 * 330.00317 * 5 4 3 34 34 H 0.96994 * 119.99543 * 180.02562 * 9 8 6 35 35 H 1.08007 * 120.06512 * 359.97275 * 17 16 14 36 36 H 1.08996 * 109.47039 * 60.00563 * 20 19 18 37 37 H 1.08996 * 109.46990 * 180.02562 * 20 19 18 38 38 H 1.09003 * 109.47313 * 300.00253 * 20 19 18 39 39 H 1.08000 * 119.83337 * 179.69574 * 23 18 17 40 40 H 1.08008 * 119.94179 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9936 1.3320 -1.1314 5 6 2.4856 1.5149 -2.4932 6 6 2.4416 2.9855 -2.8197 7 1 2.7606 3.7112 -2.0863 8 6 1.9951 3.4044 -4.0551 9 7 1.9571 4.6877 -4.3401 10 14 1.4440 2.1491 -5.3239 11 1 -0.0090 1.8880 -5.1634 12 1 1.7045 2.6764 -6.6875 13 1 2.1985 0.8849 -5.1296 14 6 4.3169 1.1885 -0.9195 15 8 5.0919 1.2454 -1.8544 16 6 4.8254 0.9620 0.4486 17 6 4.0078 0.3663 1.4115 18 6 4.4905 0.1525 2.6850 19 16 3.4616 -0.6055 3.8981 20 6 2.6022 0.7804 4.6927 21 8 2.5495 -1.3908 3.1429 22 8 4.3747 -1.2108 4.8032 23 6 5.7789 0.5367 3.0155 24 6 6.5937 1.1320 2.0713 25 6 6.1260 1.3475 0.7876 26 9 6.9225 1.9300 -0.1352 27 1 -0.5400 0.9353 0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 -0.0895 31 1 2.6212 1.4025 0.9314 32 1 3.1433 1.0058 -3.1979 33 1 1.4818 1.0965 -2.5658 34 1 1.6427 4.9824 -5.2091 35 1 3.0006 0.0701 1.1578 36 1 2.0205 1.3226 3.9472 37 1 1.9362 0.3992 5.4667 38 1 3.3337 1.4522 5.1418 39 1 6.1490 0.3707 4.0164 40 1 7.5977 1.4295 2.3362 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293655906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:27 Heat of formation + Delta-G solvation = -55.966196 kcal Electronic energy + Delta-G solvation = -28146.746599 eV Core-core repulsion = 23971.265179 eV Total energy + Delta-G solvation = -4175.481420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -49.04075 -40.35439 -38.26413 -37.40820 -36.24238 -36.14782 -33.31431 -32.36164 -31.70245 -31.21823 -29.83407 -28.26885 -26.15098 -24.24039 -23.46285 -22.31294 -20.46436 -19.65095 -18.88511 -17.80191 -17.63589 -17.10117 -16.92899 -16.52592 -16.46448 -15.87821 -15.75172 -15.52955 -14.98275 -14.60242 -14.12162 -13.97028 -13.80024 -13.65068 -13.53694 -13.50395 -13.10191 -13.01221 -12.72770 -12.40705 -12.37055 -12.28011 -11.88806 -11.71152 -11.53615 -11.29530 -11.28616 -11.09279 -10.88897 -10.58133 -10.19217 -9.72276 -9.50810 -9.38205 -9.30623 -9.11554 -8.62816 -7.91220 -6.12613 -4.11921 -0.29996 0.32439 0.62326 2.28364 2.48378 2.67254 3.24801 3.32156 3.37893 3.40300 3.55213 3.67440 3.80594 3.89812 4.26985 4.36737 4.40425 4.48478 4.53753 4.75055 4.90975 5.05357 5.17280 5.20778 5.21832 5.27321 5.33154 5.38988 5.54469 5.62651 5.71495 5.88836 6.04829 6.35530 6.59313 6.69701 6.78139 6.89192 7.17584 7.54852 8.00002 8.39598 8.70299 8.89961 9.46955 11.00614 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014351 B = 0.004063 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.625393 B = 6890.570442 C = 8224.454960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.187 4.187 3 C 0.104 3.896 4 N -0.576 5.576 5 C 0.218 3.782 6 C -0.530 4.530 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.263 1.263 14 C 0.548 3.452 15 O -0.516 6.516 16 C -0.177 4.177 17 C 0.005 3.995 18 C -0.690 4.690 19 S 2.501 3.499 20 C -0.651 4.651 21 O -0.929 6.929 22 O -0.937 6.937 23 C 0.020 3.980 24 C -0.184 4.184 25 C 0.209 3.791 26 F -0.105 7.105 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.265 0.735 35 H 0.182 0.818 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.154 0.846 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.004 -8.652 21.360 23.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.206 4.206 3 C -0.019 4.019 4 N -0.306 5.306 5 C 0.098 3.902 6 C -0.569 4.569 7 H 0.093 0.907 8 C -0.128 4.128 9 N -0.534 5.534 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.188 1.188 14 C 0.333 3.667 15 O -0.393 6.393 16 C -0.182 4.182 17 C -0.013 4.013 18 C -0.776 4.776 19 S 2.680 3.320 20 C -0.801 4.801 21 O -0.926 6.926 22 O -0.935 6.935 23 C 0.000 4.000 24 C -0.204 4.204 25 C 0.188 3.812 26 F -0.082 7.082 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.134 0.866 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.199 0.801 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.172 0.828 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.336 -9.307 20.772 22.801 hybrid contribution 0.014 0.583 -1.234 1.365 sum 1.350 -8.724 19.538 21.440 Atomic orbital electron populations 1.23906 0.95632 1.02200 0.98182 1.23319 0.96745 0.98702 1.01879 1.21447 0.93696 0.96348 0.90433 1.47769 1.04358 1.69315 1.09149 1.19732 0.94460 0.98312 0.77705 1.21274 1.44196 0.90299 1.01118 0.90715 1.24827 0.95028 0.95177 0.97785 1.69890 1.46897 1.13951 1.22659 0.86881 0.79318 0.82348 0.81449 1.19977 1.20870 1.18803 1.17797 0.83155 0.78789 0.86910 1.90826 1.55324 1.50017 1.43109 1.20480 0.94436 1.06300 0.97025 1.22105 1.00301 0.88798 0.90105 1.30608 1.11006 1.22371 1.13570 1.05210 0.75257 0.76586 0.74956 1.30243 1.14933 1.20472 1.14489 1.93615 1.64315 1.64812 1.69839 1.93587 1.62550 1.72979 1.64340 1.20887 0.90559 0.88808 0.99697 1.21243 1.02465 1.04968 0.91705 1.18008 0.87201 0.89556 0.86402 1.91650 1.71903 1.79819 1.64857 0.87997 0.88132 0.86616 0.89029 0.88916 0.93873 0.95005 0.92498 0.80149 0.84554 0.84791 0.84813 0.82844 0.83084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 14.32 29.01 0.42 -1.52 16 2 C -0.19 -2.55 7.98 -36.03 -0.29 -2.84 16 3 C 0.10 1.60 5.36 -5.20 -0.03 1.57 16 4 N -0.58 -11.87 2.49 -177.61 -0.44 -12.31 16 5 C 0.22 5.29 4.15 -5.19 -0.02 5.27 16 6 C -0.53 -15.08 9.94 -34.44 -0.34 -15.42 16 7 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 8 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 9 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 10 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 14 C 0.55 11.63 7.44 -12.39 -0.09 11.54 16 15 O -0.52 -13.15 15.37 5.31 0.08 -13.07 16 16 C -0.18 -2.91 5.57 -104.91 -0.58 -3.49 16 17 C 0.01 0.07 6.88 -39.19 -0.27 -0.20 16 18 C -0.69 -6.87 5.65 -39.64 -0.22 -7.10 16 19 S 2.50 19.87 5.79 -107.50 -0.62 19.25 16 20 C -0.65 -2.47 10.80 101.05 1.09 -1.38 16 21 O -0.93 -10.32 17.12 -57.54 -0.99 -11.30 16 22 O -0.94 -9.68 17.11 -57.54 -0.98 -10.67 16 23 C 0.02 0.18 9.46 -39.52 -0.37 -0.20 16 24 C -0.18 -1.95 10.01 -39.57 -0.40 -2.35 16 25 C 0.21 3.16 7.25 -38.96 -0.28 2.87 16 26 F -0.10 -1.85 15.89 2.25 0.04 -1.82 16 27 H 0.10 1.15 7.84 -52.49 -0.41 0.74 16 28 H 0.10 1.04 8.06 -52.48 -0.42 0.62 16 29 H 0.12 1.55 7.61 -52.49 -0.40 1.15 16 30 H 0.09 1.43 7.79 -51.92 -0.40 1.02 16 31 H 0.09 1.17 3.93 -52.53 -0.21 0.96 16 32 H 0.04 1.14 6.50 -51.92 -0.34 0.80 16 33 H 0.03 0.73 7.26 -51.93 -0.38 0.35 16 34 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 35 H 0.18 2.22 2.55 -52.48 -0.13 2.09 16 36 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.13 0.28 8.14 -51.92 -0.42 -0.15 16 39 H 0.15 0.90 7.56 -52.49 -0.40 0.50 16 40 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 354.20 15.07 5.34 5.34 Total: -1.00 -39.02 354.20 -7.34 -46.36 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -4.37 Total: -0.73 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -1.49 Total: -11.19 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.33 Total: -38.93 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -1.89 Total: -35.04 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 19.87 SS G_CDS: -0.62 Total: 19.25 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -39.02 -7.34 -46.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293655906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.602 kcal (2) G-P(sol) polarization free energy of solvation -39.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds