Wall clock time and date at job start Tue Mar 31 2020 23:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47339 * 2 1 4 4 C 1.36936 * 120.00110 * 83.58466 * 3 2 1 5 5 H 1.07997 * 120.00008 * 169.92681 * 4 3 2 6 6 C 1.38819 * 120.00118 * 349.92861 * 4 3 2 7 7 N 1.31622 * 119.99732 * 2.12179 * 6 4 3 8 8 Si 1.86803 * 120.00001 * 182.12462 * 6 4 3 9 9 H 1.48493 * 109.47198 * 60.00037 * 8 6 4 10 10 H 1.48497 * 109.46589 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46743 * 299.99548 * 8 6 4 12 12 C 1.46492 * 119.99792 * 263.58949 * 3 2 1 13 13 H 1.09000 * 109.47233 * 174.04040 * 12 3 2 14 14 C 1.52996 * 109.47499 * 54.03905 * 12 3 2 15 15 C 1.50698 * 109.47183 * 294.03909 * 12 3 2 16 16 O 1.21295 * 120.00135 * 8.38270 * 15 12 3 17 17 N 1.34775 * 120.00314 * 188.38796 * 15 12 3 18 18 C 1.39978 * 120.00404 * 176.31274 * 17 15 12 19 19 C 1.38857 * 120.07112 * 33.00458 * 18 17 15 20 20 C 1.38112 * 119.93928 * 179.76791 * 19 18 17 21 21 C 1.38299 * 120.09524 * 0.48808 * 20 19 18 22 22 N 1.48027 * 119.92412 * 179.76521 * 21 20 19 23 23 O 1.21794 * 119.99537 * 180.02562 * 22 21 20 24 24 O 1.21800 * 120.00054 * 0.02673 * 22 21 20 25 25 C 1.38254 * 120.14580 * 359.78739 * 21 20 19 26 26 C 1.38223 * 120.06002 * 359.95878 * 25 21 20 27 27 Cl 1.73599 * 120.04723 * 180.02562 * 26 25 21 28 28 H 1.09003 * 109.46924 * 66.12080 * 1 2 3 29 29 H 1.08997 * 109.47551 * 186.11814 * 1 2 3 30 30 H 1.09003 * 109.47420 * 306.12112 * 1 2 3 31 31 H 1.08994 * 109.47105 * 239.99020 * 2 1 3 32 32 H 1.09004 * 109.46467 * 119.99553 * 2 1 3 33 33 H 0.96994 * 119.99494 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.47174 * 59.99774 * 14 12 3 35 35 H 1.09005 * 109.47436 * 180.02562 * 14 12 3 36 36 H 1.09000 * 109.46989 * 300.00285 * 14 12 3 37 37 H 0.97004 * 119.99769 * 356.04200 * 17 15 12 38 38 H 1.07997 * 120.02977 * 0.02562 * 19 18 17 39 39 H 1.08003 * 119.95081 * 180.26043 * 20 19 18 40 40 H 1.07999 * 119.96730 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1217 2.0709 1.1785 5 1 2.6301 3.0234 1.2039 6 6 1.5730 1.5458 2.3405 7 7 0.9901 0.3659 2.3182 8 14 1.6619 2.5137 3.9357 9 1 0.9647 3.8136 3.7654 10 1 1.0075 1.7400 5.0211 11 1 3.0838 2.7570 4.2884 12 6 2.3961 2.0245 -1.2608 13 1 2.6311 3.0730 -1.0776 14 6 1.2338 1.9279 -2.2509 15 6 3.6046 1.3319 -1.8358 16 8 4.0100 0.3041 -1.3352 17 7 4.2352 1.8545 -2.9062 18 6 5.4023 1.2543 -3.3930 19 6 5.5639 -0.1223 -3.3091 20 6 6.7145 -0.7121 -3.7946 21 6 7.7100 0.0674 -4.3550 22 7 8.9439 -0.5682 -4.8695 23 8 9.8217 0.1170 -5.3628 24 8 9.0814 -1.7764 -4.7995 25 6 7.5555 1.4389 -4.4352 26 6 6.4043 2.0352 -3.9560 27 17 6.2104 3.7573 -4.0576 28 1 -0.3633 0.4160 -0.9397 29 1 -0.3634 -1.0218 0.1095 30 1 -0.3634 0.6058 0.8301 31 1 1.8933 -0.5140 -0.8898 32 1 1.8932 -0.5138 0.8901 33 1 0.6065 -0.0009 3.1300 34 1 0.3595 2.4288 -1.8351 35 1 1.5150 2.4062 -3.1892 36 1 0.9987 0.8794 -2.4341 37 1 3.8780 2.6442 -3.3416 38 1 4.7888 -0.7316 -2.8684 39 1 6.8385 -1.7832 -3.7333 40 1 8.3350 2.0449 -4.8730 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299315201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:00 Heat of formation + Delta-G solvation = 26.511361 kcal Electronic energy + Delta-G solvation = -27439.450668 eV Core-core repulsion = 23285.421999 eV Total energy + Delta-G solvation = -4154.028670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 4.86 seconds Orbital eigenvalues (eV) -42.31452 -40.81970 -38.97808 -37.02128 -36.67971 -36.29259 -34.95627 -32.62832 -31.51501 -30.91907 -29.76779 -28.71097 -26.50292 -24.49384 -23.83378 -23.37398 -22.28661 -21.10643 -19.79801 -19.60553 -18.76215 -18.15815 -17.65955 -17.05281 -16.72073 -15.89143 -15.69414 -15.31925 -14.85543 -14.43600 -14.23603 -13.99083 -13.71223 -13.64161 -13.19257 -12.39304 -12.30488 -12.15711 -12.09505 -11.98412 -11.73081 -11.63485 -11.41484 -11.29470 -11.26744 -11.19914 -10.97615 -10.82731 -10.76572 -10.53136 -10.03138 -9.87231 -9.67603 -9.55106 -9.31473 -8.74543 -8.45267 -7.04191 -5.74514 -3.28278 -0.38232 0.48712 1.09796 1.11619 1.62454 2.64309 2.74449 3.08161 3.30617 3.35791 3.36541 4.06837 4.26852 4.32167 4.42741 4.48034 4.85971 5.06839 5.19526 5.21898 5.31967 5.38551 5.53621 5.61197 5.68368 5.83936 5.95896 6.15575 6.22974 6.35339 6.53687 6.64679 6.97485 7.05329 7.19275 7.24285 7.50840 7.51177 7.87044 8.10655 8.21404 8.37977 9.12537 9.68143 10.08901 11.15129 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.015443 B = 0.002930 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.647150 B = 9555.362224 C = 9941.952355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.173 3.827 3 N -0.566 5.566 4 C -0.256 4.256 5 H 0.074 0.926 6 C 0.000 4.000 7 N -0.899 5.899 8 Si 0.914 3.086 9 H -0.284 1.284 10 H -0.289 1.289 11 H -0.285 1.285 12 C 0.162 3.838 13 H 0.093 0.907 14 C -0.155 4.155 15 C 0.488 3.512 16 O -0.491 6.491 17 N -0.678 5.678 18 C 0.231 3.769 19 C -0.119 4.119 20 C -0.026 4.026 21 C -0.068 4.068 22 N 0.037 4.963 23 O -0.167 6.167 24 O -0.162 6.162 25 C -0.024 4.024 26 C -0.083 4.083 27 Cl -0.037 7.037 28 H 0.003 0.997 29 H 0.019 0.981 30 H 0.085 0.915 31 H 0.005 0.995 32 H 0.100 0.900 33 H 0.252 0.748 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.415 0.585 38 H 0.175 0.825 39 H 0.161 0.839 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.264 3.790 -14.868 16.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.049 3.951 3 N -0.284 5.284 4 C -0.385 4.385 5 H 0.092 0.908 6 C -0.196 4.196 7 N -0.545 5.545 8 Si 0.744 3.256 9 H -0.210 1.210 10 H -0.215 1.215 11 H -0.211 1.211 12 C 0.047 3.953 13 H 0.111 0.889 14 C -0.214 4.214 15 C 0.274 3.726 16 O -0.361 6.361 17 N -0.324 5.324 18 C 0.130 3.870 19 C -0.140 4.140 20 C -0.046 4.046 21 C -0.153 4.153 22 N 0.555 4.445 23 O -0.381 6.381 24 O -0.377 6.377 25 C -0.044 4.044 26 C -0.114 4.114 27 Cl -0.008 7.008 28 H 0.022 0.978 29 H 0.038 0.962 30 H 0.103 0.897 31 H 0.023 0.977 32 H 0.118 0.882 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.252 0.748 38 H 0.192 0.808 39 H 0.178 0.822 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.718 3.417 -13.915 15.427 hybrid contribution 0.323 0.900 0.440 1.053 sum 6.041 4.317 -13.475 15.385 Atomic orbital electron populations 1.22475 0.99108 0.99021 0.99096 1.20967 0.91955 0.83222 0.98917 1.44077 1.72453 1.11892 0.99993 1.19303 1.30971 1.02230 0.85958 0.90848 1.24851 0.99280 0.97240 0.98267 1.70262 1.41266 1.16463 1.26472 0.86188 0.77687 0.78968 0.82784 1.21035 1.21459 1.21095 1.20263 0.89506 0.96697 0.88858 0.88944 1.22299 0.99349 1.02564 0.97185 1.24189 0.85595 0.85848 0.76947 1.90645 1.64370 1.22939 1.58144 1.44727 1.23803 1.32390 1.31506 1.18124 0.86856 0.91722 0.90330 1.21473 0.99229 0.92691 1.00644 1.21082 0.90292 1.01945 0.91262 1.20806 0.88919 0.93165 1.12400 1.43457 1.01861 1.00963 0.98236 1.94529 1.35159 1.63106 1.45354 1.94546 1.85383 0.96651 1.61123 1.20545 0.96588 0.92233 0.95081 1.20415 0.95284 0.86436 1.09251 1.98402 1.97137 1.08175 1.97092 0.97793 0.96159 0.89658 0.97694 0.88224 0.93683 0.90838 0.93577 0.92166 0.74756 0.80808 0.82171 0.81948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.08 37.16 0.34 -2.73 16 2 C 0.17 4.05 4.28 -4.04 -0.02 4.03 16 3 N -0.57 -12.82 2.22 -166.99 -0.37 -13.19 16 4 C -0.26 -6.43 9.75 -15.06 -0.15 -6.58 16 5 H 0.07 1.77 7.71 -52.49 -0.40 1.37 16 6 C 0.00 0.01 5.20 -17.43 -0.09 -0.08 16 7 N -0.90 -23.84 7.28 55.49 0.40 -23.44 16 8 Si 0.91 20.69 29.55 -169.99 -5.02 15.66 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.16 2.80 3.09 -69.09 -0.21 2.58 16 13 H 0.09 1.48 7.82 -51.93 -0.41 1.07 16 14 C -0.15 -2.21 8.09 37.16 0.30 -1.91 16 15 C 0.49 7.95 6.77 -10.99 -0.07 7.88 16 16 O -0.49 -9.74 12.12 5.54 0.07 -9.67 16 17 N -0.68 -8.21 5.07 -9.83 -0.05 -8.26 16 18 C 0.23 2.75 6.33 -83.64 -0.53 2.22 16 19 C -0.12 -1.46 8.71 -39.40 -0.34 -1.80 16 20 C -0.03 -0.29 9.55 -39.60 -0.38 -0.67 16 21 C -0.07 -0.79 6.85 -79.91 -0.55 -1.34 16 22 N 0.04 0.49 4.45 33.98 0.15 0.64 16 23 O -0.17 -2.27 18.44 -29.46 -0.54 -2.81 16 24 O -0.16 -2.24 18.44 -29.46 -0.54 -2.79 16 25 C -0.02 -0.25 9.33 -39.58 -0.37 -0.62 16 26 C -0.08 -0.88 6.34 -39.32 -0.25 -1.13 16 27 Cl -0.04 -0.34 27.93 -51.86 -1.45 -1.79 16 28 H 0.00 0.06 6.32 -51.93 -0.33 -0.26 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 2.14 6.04 -51.93 -0.31 1.83 16 31 H 0.00 0.11 6.47 -51.93 -0.34 -0.23 16 32 H 0.10 2.71 5.93 -51.93 -0.31 2.40 16 33 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 34 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 35 H 0.05 0.48 8.07 -51.93 -0.42 0.06 16 36 H 0.06 0.93 6.56 -51.93 -0.34 0.59 16 37 H 0.41 3.89 7.96 -40.82 -0.32 3.57 16 38 H 0.17 2.36 6.10 -52.49 -0.32 2.04 16 39 H 0.16 1.54 7.60 -52.48 -0.40 1.14 16 40 H 0.16 1.43 7.60 -52.49 -0.40 1.03 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -28.53 348.88 -8.70 -37.23 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.27 Total: 3.30 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.32 Total: -0.13 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.14 Total: -44.25 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -1.02 Total: -15.28 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.45 Total: -1.79 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.53 -8.70 -37.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299315201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.740 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.86 seconds