Wall clock time and date at job start Wed Apr 1 2020 00:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99525 * 2 1 4 4 C 1.50706 * 109.47359 * 275.57168 * 3 2 1 5 5 H 1.07999 * 119.99750 * 4.71344 * 4 3 2 6 6 C 1.37871 * 120.00145 * 184.72135 * 4 3 2 7 7 N 1.31519 * 120.00033 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99850 * 179.97438 * 6 4 3 9 9 H 1.48493 * 109.47012 * 60.00191 * 8 6 4 10 10 H 1.48511 * 109.47010 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47231 * 299.99717 * 8 6 4 12 12 S 1.65591 * 120.00064 * 180.02562 * 2 1 3 13 13 O 1.42107 * 106.40431 * 159.57077 * 12 2 1 14 14 O 1.42100 * 106.40304 * 26.65109 * 12 2 1 15 15 N 1.65599 * 107.21695 * 273.10968 * 12 2 1 16 16 C 1.46492 * 120.00090 * 62.77701 * 15 12 2 17 17 C 1.53006 * 109.47393 * 164.44770 * 16 15 12 18 18 S 1.81406 * 109.47246 * 179.97438 * 17 16 15 19 19 O 1.42095 * 110.53989 * 68.37272 * 18 17 16 20 20 O 1.42099 * 110.53903 * 291.62003 * 18 17 16 21 21 N 1.65599 * 104.44635 * 179.97438 * 18 17 16 22 22 C 1.46498 * 120.00236 * 65.00005 * 21 18 17 23 23 C 1.52998 * 117.50147 * 213.61899 * 22 21 18 24 24 C 1.52997 * 117.50384 * 144.99286 * 22 21 18 25 25 H 1.08995 * 109.47105 * 269.99853 * 1 2 3 26 26 H 1.09000 * 109.47348 * 29.99925 * 1 2 3 27 27 H 1.08998 * 109.47059 * 150.00119 * 1 2 3 28 28 H 1.08993 * 109.47867 * 35.57458 * 3 2 1 29 29 H 1.09006 * 109.46867 * 155.57711 * 3 2 1 30 30 H 0.96998 * 119.99824 * 179.97438 * 7 6 4 31 31 H 0.96999 * 120.00105 * 242.77467 * 15 12 2 32 32 H 1.08997 * 109.47837 * 44.44389 * 16 15 12 33 33 H 1.08999 * 109.47146 * 284.44339 * 16 15 12 34 34 H 1.08995 * 109.47238 * 59.99785 * 17 16 15 35 35 H 1.08999 * 109.46623 * 299.99890 * 17 16 15 36 36 H 0.96998 * 120.00041 * 244.99432 * 21 18 17 37 37 H 1.09005 * 115.54678 * 359.32587 * 22 21 18 38 38 H 1.08994 * 117.49737 * 0.02562 * 23 22 21 39 39 H 1.08997 * 117.49650 * 145.02032 * 23 22 21 40 40 H 1.09000 * 117.50409 * 214.98139 * 24 22 21 41 41 H 1.09004 * 117.49426 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3291 1.7729 -1.4141 5 1 1.8446 1.2457 -2.2226 6 6 3.0683 2.9069 -1.6757 7 7 3.6581 3.5491 -0.6911 8 14 3.2320 3.5313 -3.4287 9 1 1.8857 3.8480 -3.9691 10 1 4.0708 4.7567 -3.4413 11 1 3.8694 2.4859 -4.2690 12 16 2.2930 -1.4341 -0.0006 13 8 3.6000 -1.1426 -0.4763 14 8 1.4385 -2.3905 -0.6125 15 7 2.4638 -1.9021 1.5786 16 6 1.2785 -2.1971 2.3874 17 6 1.6965 -2.9619 3.6450 18 16 0.2289 -3.3264 4.6469 19 8 -0.6024 -4.2718 3.9879 20 8 -0.3113 -2.1310 5.1932 21 7 0.8180 -4.1463 5.9596 22 6 1.7112 -3.4713 6.9044 23 6 2.8023 -4.3128 7.5695 24 6 1.5920 -3.8487 8.3823 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6553 2.0014 0.5978 29 1 3.1895 1.1156 0.4249 30 1 4.1784 4.3467 -0.8753 31 1 3.3486 -1.9811 1.9681 32 1 0.5842 -2.8044 1.8068 33 1 0.7930 -1.2643 2.6742 34 1 2.3907 -2.3545 4.2257 35 1 2.1821 -3.8947 3.3583 36 1 0.5716 -5.0734 6.1029 37 1 1.9492 -2.4343 6.6674 38 1 2.8558 -5.3685 7.3037 39 1 3.7584 -3.8295 7.7701 40 1 1.7519 -3.0602 9.1177 41 1 0.8485 -4.5990 8.6516 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331740937.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:36 Heat of formation + Delta-G solvation = -150.347238 kcal Electronic energy + Delta-G solvation = -26058.070307 eV Core-core repulsion = 22033.860131 eV Total energy + Delta-G solvation = -4024.210176 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 7.19 seconds Orbital eigenvalues (eV) -38.68472 -38.35724 -38.15801 -37.29937 -37.12906 -36.98852 -36.89221 -34.50570 -33.07301 -31.29469 -29.66562 -26.80383 -24.61101 -24.21528 -23.16354 -22.99583 -20.78094 -20.41559 -19.11677 -18.82450 -18.46913 -18.28814 -17.66066 -17.39514 -17.05303 -16.73469 -16.48274 -16.03214 -15.78978 -15.49472 -15.09625 -14.93615 -14.10858 -13.98229 -13.89942 -13.82023 -13.36650 -13.34964 -13.24927 -13.19720 -13.19452 -13.09441 -13.03608 -12.99155 -12.94721 -12.92121 -12.48113 -12.36079 -12.31494 -11.98894 -11.86605 -11.76811 -11.27680 -10.69386 -10.57494 -9.98264 -9.80806 -8.20444 -6.32210 -0.90506 -0.34122 1.39850 1.42959 1.50062 1.63780 1.98116 2.40263 2.58283 2.68724 2.99825 3.10921 3.19990 3.27646 3.46030 3.74469 3.93195 4.00863 4.05339 4.11906 4.14266 4.16211 4.36478 4.48970 4.71479 4.79916 4.87019 4.88514 5.07910 5.11721 5.20737 5.29172 5.32118 5.43841 5.69498 5.84190 6.02371 6.06961 6.12380 6.76044 7.36724 8.87080 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.020650 B = 0.002677 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.575221 B =10458.462539 C =10798.065796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.003 6.003 3 C 0.269 3.731 4 C -0.553 4.553 5 H 0.053 0.947 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.277 1.277 12 S 2.795 3.205 13 O -1.005 7.005 14 O -1.008 7.008 15 N -1.110 6.110 16 C 0.109 3.891 17 C -0.629 4.629 18 S 2.637 3.363 19 O -0.985 6.985 20 O -0.980 6.980 21 N -1.080 6.080 22 C 0.058 3.942 23 C -0.178 4.178 24 C -0.193 4.193 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.029 0.971 29 H 0.023 0.977 30 H 0.268 0.732 31 H 0.429 0.571 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.426 0.574 37 H 0.147 0.853 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.074 -16.163 19.305 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.845 5.845 3 C 0.146 3.854 4 C -0.592 4.592 5 H 0.071 0.929 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.780 3.220 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.203 1.203 12 S 2.802 3.198 13 O -0.989 6.989 14 O -0.991 6.991 15 N -0.875 5.875 16 C -0.019 4.019 17 C -0.760 4.760 18 S 2.730 3.270 19 O -0.975 6.975 20 O -0.970 6.970 21 N -0.839 5.839 22 C -0.050 4.050 23 C -0.218 4.218 24 C -0.232 4.232 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.265 0.735 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.189 0.811 35 H 0.187 0.813 36 H 0.262 0.738 37 H 0.165 0.835 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.744 -16.056 18.297 24.629 hybrid contribution 1.059 0.271 -0.485 1.196 sum -2.685 -15.784 17.813 23.951 Atomic orbital electron populations 1.21707 0.78165 1.04027 1.02773 1.57480 1.15730 1.22009 1.89289 1.18668 0.90703 0.80128 0.95944 1.21831 1.31941 1.10684 0.94755 0.92853 1.25741 0.94768 0.96801 1.01421 1.69995 1.33709 1.19399 1.33181 0.85649 0.78700 0.77678 0.79936 1.18872 1.20144 1.20289 1.01328 0.72202 0.72547 0.73679 1.93590 1.40784 1.85101 1.79382 1.93518 1.69050 1.61169 1.75365 1.55704 1.14927 1.85126 1.31717 1.21180 0.88185 1.00879 0.91669 1.30847 1.22843 1.12745 1.09584 1.04050 0.75693 0.73325 0.73974 1.93595 1.65283 1.62553 1.76114 1.93603 1.76396 1.49937 1.77039 1.54917 1.63730 1.25921 1.39293 1.21671 0.96088 0.97432 0.89801 1.23518 0.94360 1.01278 1.02597 1.23464 1.01350 1.04601 0.93808 0.90650 0.90764 0.90422 0.95253 0.95883 0.92341 0.73450 0.89112 0.89208 0.81088 0.81321 0.73767 0.83530 0.87639 0.86630 0.87182 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.57 10.69 127.77 1.37 3.93 16 2 N -1.00 -40.56 3.23 -543.22 -1.75 -42.31 16 3 C 0.27 13.46 5.10 85.64 0.44 13.90 16 4 C -0.55 -31.16 9.38 25.60 0.24 -30.92 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.70 5.46 84.65 0.46 1.16 16 7 N -0.92 -53.97 13.29 21.45 0.28 -53.68 16 8 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 9 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 12 S 2.79 106.59 6.09 -56.49 -0.34 106.24 16 13 O -1.00 -47.35 16.99 -128.00 -2.17 -49.53 16 14 O -1.01 -40.51 16.34 -128.00 -2.09 -42.60 16 15 N -1.11 -28.46 6.05 -187.50 -1.13 -29.60 16 16 C 0.11 2.24 6.27 86.38 0.54 2.78 16 17 C -0.63 -7.47 6.22 71.98 0.45 -7.02 16 18 S 2.64 41.60 5.44 -56.49 -0.31 41.29 16 19 O -0.99 -22.60 18.08 -127.65 -2.31 -24.91 16 20 O -0.98 -22.46 17.82 -127.65 -2.27 -24.73 16 21 N -1.08 -10.82 5.93 -169.39 -1.00 -11.82 16 22 C 0.06 0.49 6.34 44.99 0.29 0.77 16 23 C -0.18 -0.99 10.46 30.59 0.32 -0.67 16 24 C -0.19 -1.47 10.46 30.59 0.32 -1.15 16 25 H 0.08 1.91 8.05 -2.39 -0.02 1.89 16 26 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 27 H 0.08 2.37 7.05 -2.39 -0.02 2.35 16 28 H 0.03 1.48 8.11 -2.39 -0.02 1.46 16 29 H 0.02 1.24 7.50 -2.38 -0.02 1.22 16 30 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 31 H 0.43 8.74 8.66 -96.75 -0.84 7.90 16 32 H 0.09 1.89 7.79 -2.39 -0.02 1.87 16 33 H 0.09 1.69 8.05 -2.39 -0.02 1.67 16 34 H 0.17 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.17 1.21 8.14 -2.39 -0.02 1.20 16 36 H 0.43 3.09 8.92 -96.75 -0.86 2.22 16 37 H 0.15 0.96 8.11 -2.38 -0.02 0.94 16 38 H 0.11 0.47 8.14 -2.39 -0.02 0.46 16 39 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -84.45 375.76 -7.30 -91.75 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -0.64 Total: 10.53 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 4.42 Total: -17.21 kcal Atomic # 7 Polarization: -133.80 SS G_CDS: -3.61 Total: -137.41 kcal Atomic # 8 Polarization: -132.92 SS G_CDS: -8.85 Total: -141.77 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 148.18 SS G_CDS: -0.65 Total: 147.53 kcal Total: -84.45 -7.30 -91.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331740937.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.597 kcal (2) G-P(sol) polarization free energy of solvation -84.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.19 seconds