Wall clock time and date at job start Tue Mar 31 2020 23:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.46699 * 2 1 4 4 C 1.46498 * 120.00271 * 274.99686 * 3 2 1 5 5 C 1.50700 * 109.47387 * 275.00963 * 4 3 2 6 6 H 1.07999 * 120.00059 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00025 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99595 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99901 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47188 * 59.99391 * 9 7 5 11 11 H 1.48502 * 109.46782 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46990 * 299.99145 * 9 7 5 13 13 S 1.65602 * 119.99510 * 95.00724 * 3 2 1 14 14 O 1.42101 * 106.40130 * 156.45576 * 13 3 2 15 15 O 1.42098 * 106.40687 * 23.53128 * 13 3 2 16 16 N 1.65605 * 107.21318 * 269.99276 * 13 3 2 17 17 C 1.47029 * 125.64905 * 270.04376 * 16 13 3 18 18 C 1.54316 * 107.27124 * 181.02697 * 17 16 13 19 19 C 1.55159 * 102.94310 * 22.18997 * 18 17 16 20 20 H 1.09002 * 111.03724 * 82.59017 * 19 18 17 21 21 S 1.81401 * 111.00605 * 206.42498 * 19 18 17 22 22 N 1.65608 * 104.44945 * 297.19681 * 21 19 18 23 23 O 1.42102 * 110.54326 * 185.57610 * 21 19 18 24 24 O 1.42097 * 110.54474 * 48.82214 * 21 19 18 25 25 C 1.47422 * 125.64784 * 90.00348 * 16 13 3 26 26 H 1.09003 * 109.47741 * 59.99480 * 1 2 3 27 27 H 1.08996 * 109.47285 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47563 * 299.99982 * 1 2 3 29 29 H 1.09000 * 109.46914 * 240.00683 * 2 1 3 30 30 H 1.08997 * 109.47122 * 120.00215 * 2 1 3 31 31 H 1.09005 * 109.46711 * 35.00281 * 4 3 2 32 32 H 1.08994 * 109.46885 * 155.00520 * 4 3 2 33 33 H 0.97006 * 119.99638 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.87859 * 300.44337 * 17 16 13 35 35 H 1.08999 * 109.87735 * 61.60663 * 17 16 13 36 36 H 1.09002 * 110.71899 * 263.83191 * 18 17 16 37 37 H 1.08994 * 110.72515 * 140.55511 * 18 17 16 38 38 H 0.97000 * 119.99948 * 240.00390 * 22 21 19 39 39 H 0.97003 * 119.99316 * 60.00231 * 22 21 19 40 40 H 1.09003 * 110.36593 * 37.07258 * 25 16 13 41 41 H 1.08990 * 110.46244 * 274.79180 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4946 1.7889 -1.8824 6 1 4.1722 1.1117 -1.3837 7 6 3.8528 2.3615 -3.0844 8 7 3.0278 3.1865 -3.6913 9 14 5.5097 1.9655 -3.8507 10 1 5.6001 0.5058 -4.1075 11 1 5.6514 2.7029 -5.1319 12 1 6.5946 2.3729 -2.9220 13 16 2.4121 2.1202 1.4288 14 8 3.3283 3.1570 1.1050 15 8 2.7095 1.0799 2.3499 16 7 1.0430 2.8641 1.9895 17 6 0.6299 4.2417 1.6840 18 6 -0.6875 4.5041 2.4434 19 6 -0.6470 3.4522 3.5833 20 1 -0.0464 3.8062 4.4212 21 16 -2.3222 3.0173 4.1266 22 7 -2.9431 4.4316 4.7240 23 8 -2.2724 2.1530 5.2534 24 8 -3.1468 2.7171 3.0089 25 6 0.0361 2.2546 2.8772 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.3616 1.8098 -1.9453 32 1 2.0921 3.1803 -1.0755 33 1 3.2796 3.5891 -4.5372 34 1 1.3962 4.9412 2.0182 35 1 0.4678 4.3508 0.6116 36 1 -1.5469 4.3363 1.7942 37 1 -0.7028 5.5146 2.8516 38 1 -3.2277 4.4835 5.6499 39 1 -3.0221 5.2081 4.1480 40 1 0.5183 1.6072 3.6096 41 1 -0.6932 1.6909 2.2956 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336941743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:41 Heat of formation + Delta-G solvation = -141.902164 kcal Electronic energy + Delta-G solvation = -27418.617064 eV Core-core repulsion = 23394.773093 eV Total energy + Delta-G solvation = -4023.843970 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.63662 -37.37264 -36.76029 -36.28071 -36.07852 -35.26729 -33.62333 -32.69893 -31.29239 -30.06587 -29.38462 -26.63833 -23.19547 -23.15993 -22.13087 -21.63734 -19.70017 -18.79248 -18.15329 -17.64067 -17.58263 -17.00638 -16.46447 -16.37870 -15.84815 -15.54136 -14.92853 -14.56317 -14.16491 -13.89440 -13.73852 -13.63379 -13.36124 -12.90452 -12.61248 -12.49353 -12.37744 -12.28797 -12.13678 -12.04193 -12.02017 -11.72498 -11.51431 -11.47841 -11.41888 -11.35491 -11.17220 -11.01158 -10.92958 -10.54837 -10.50796 -10.40699 -10.02484 -9.80274 -9.03270 -8.46077 -8.12929 -6.08874 -4.12829 -0.11495 1.04029 2.48343 3.31803 3.33076 3.35195 3.35759 3.40676 3.67495 3.91203 4.02353 4.22833 4.42559 4.55696 4.79662 4.90635 5.00234 5.21517 5.23062 5.28122 5.37653 5.48507 5.57989 5.62097 5.69243 5.72113 5.81263 5.96990 6.08326 6.28329 6.32444 6.58168 6.64085 6.67987 7.20108 7.36775 7.57901 7.88523 8.17693 8.89118 9.52422 10.99658 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.021963 B = 0.003392 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.542658 B = 8251.597273 C = 8357.849067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.115 3.885 3 N -0.988 5.988 4 C 0.258 3.742 5 C -0.530 4.530 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 S 2.789 3.211 14 O -0.954 6.954 15 O -0.991 6.991 16 N -1.017 6.017 17 C 0.127 3.873 18 C -0.109 4.109 19 C -0.612 4.612 20 H 0.151 0.849 21 S 2.627 3.373 22 N -1.246 6.246 23 O -0.956 6.956 24 O -0.947 6.947 25 C 0.140 3.860 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.420 0.580 39 H 0.416 0.584 40 H 0.098 0.902 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.890 3.753 15.056 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.011 4.011 3 N -0.830 5.830 4 C 0.136 3.864 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.799 3.201 14 O -0.938 6.938 15 O -0.975 6.975 16 N -0.855 5.855 17 C 0.000 4.000 18 C -0.149 4.149 19 C -0.722 4.722 20 H 0.169 0.831 21 S 2.716 3.284 22 N -0.918 5.918 23 O -0.946 6.946 24 O -0.937 6.937 25 C 0.012 3.988 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.250 0.750 39 H 0.244 0.756 40 H 0.117 0.883 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.330 2.824 15.164 19.747 hybrid contribution 0.947 0.773 -0.633 1.377 sum -11.383 3.597 14.531 18.806 Atomic orbital electron populations 1.22314 0.97139 1.01691 1.02112 1.21188 0.93154 0.83098 1.03682 1.57806 1.80703 1.21390 1.23116 1.19043 0.97466 0.90991 0.78868 1.21448 1.02052 1.27807 1.05631 0.92230 1.24917 0.97378 0.94787 0.96827 1.69906 1.36132 1.30175 1.17244 0.86575 0.84159 0.78454 0.78374 1.20161 1.21164 1.20014 1.01809 0.72537 0.73032 0.72763 1.93634 1.58352 1.57819 1.84023 1.93524 1.82936 1.57425 1.63594 1.59491 1.41249 1.22704 1.62023 1.21609 0.95295 0.82681 1.00388 1.22556 1.00267 0.97652 0.94404 1.32000 1.24316 1.06773 1.09091 0.83060 1.04538 0.76331 0.73260 0.74321 1.53329 1.81662 1.32590 1.24183 1.93622 1.87085 1.63382 1.50546 1.93648 1.62982 1.82170 1.54863 1.21636 0.91903 0.92551 0.92673 0.91712 0.91947 0.93512 0.89474 0.90553 0.94553 0.94616 0.92630 0.90524 0.90242 0.88703 0.88535 0.75045 0.75638 0.88325 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 10.24 37.16 0.38 -2.11 16 2 C 0.12 2.00 6.40 -4.04 -0.03 1.97 16 3 N -0.99 -20.24 2.83 -115.66 -0.33 -20.56 16 4 C 0.26 6.31 5.10 -5.19 -0.03 6.29 16 5 C -0.53 -14.68 9.38 -34.44 -0.32 -15.01 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -25.69 13.29 55.43 0.74 -24.96 16 9 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 S 2.79 55.12 6.31 -107.50 -0.68 54.44 16 14 O -0.95 -22.45 16.69 -57.17 -0.95 -23.40 16 15 O -0.99 -20.36 16.01 -57.17 -0.92 -21.27 16 16 N -1.02 -15.12 3.76 -111.42 -0.42 -15.54 16 17 C 0.13 1.55 6.99 -3.06 -0.02 1.53 16 18 C -0.11 -0.85 6.42 -24.90 -0.16 -1.01 16 19 C -0.61 -5.02 3.78 -24.58 -0.09 -5.11 16 20 H 0.15 0.91 8.14 -51.93 -0.42 0.49 16 21 S 2.63 21.87 5.50 -107.50 -0.59 21.28 16 22 N -1.25 -5.35 9.38 60.35 0.57 -4.79 16 23 O -0.96 -11.14 18.08 -57.54 -1.04 -12.18 16 24 O -0.95 -11.11 17.64 -57.54 -1.01 -12.12 16 25 C 0.14 1.67 6.41 -2.53 -0.02 1.66 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.62 6.00 -51.93 -0.31 0.30 16 29 H 0.09 1.55 8.11 -51.93 -0.42 1.12 16 30 H 0.08 1.25 6.91 -51.93 -0.36 0.89 16 31 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 32 H 0.04 0.92 7.61 -51.93 -0.40 0.52 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 0.68 7.63 -51.93 -0.40 0.28 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.42 1.27 8.92 -34.48 -0.31 0.96 16 39 H 0.42 0.89 8.96 -34.47 -0.31 0.58 16 40 H 0.10 1.13 7.78 -51.93 -0.40 0.72 16 41 H 0.08 0.84 6.11 -51.93 -0.32 0.52 16 LS Contribution 361.64 15.07 5.45 5.45 Total: -1.00 -38.60 361.64 -10.31 -48.91 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.72 Total: -1.79 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.38 Total: -10.11 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: 0.56 Total: -65.85 kcal Atomic # 8 Polarization: -65.05 SS G_CDS: -3.93 Total: -68.97 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 77.00 SS G_CDS: -1.27 Total: 75.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.60 -10.31 -48.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336941743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.990 kcal (2) G-P(sol) polarization free energy of solvation -38.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds