Wall clock time and date at job start Wed Apr 1 2020 00:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36029 * 116.99741 * 2 1 4 4 C 1.38493 * 120.07056 * 359.72098 * 3 2 1 5 5 C 1.38277 * 120.03154 * 180.25608 * 4 3 2 6 6 C 1.38357 * 120.16784 * 0.04500 * 5 4 3 7 7 Cl 1.73600 * 119.93386 * 179.97438 * 6 5 4 8 8 C 1.38324 * 120.13624 * 359.95561 * 6 5 4 9 9 C 1.38718 * 119.96355 * 0.02562 * 8 6 5 10 10 N 1.39957 * 120.08294 * 179.97438 * 9 8 6 11 11 C 1.46499 * 120.00117 * 0.02562 * 10 9 8 12 12 C 1.50696 * 109.47664 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99520 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00419 * 180.02562 * 12 11 10 15 15 C 1.46494 * 120.00430 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47402 * 179.97438 * 15 14 12 17 17 O 1.21284 * 119.99800 * 359.97438 * 16 15 14 18 18 N 1.34772 * 119.99813 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00062 * 179.97438 * 18 16 15 20 20 H 1.08005 * 119.99844 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00445 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00133 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00239 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46927 * 59.99984 * 23 21 19 25 25 H 1.48497 * 109.47198 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46774 * 300.00276 * 23 21 19 27 27 H 1.08998 * 109.46808 * 60.00275 * 1 2 3 28 28 H 1.09000 * 109.47277 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47298 * 300.00019 * 1 2 3 30 30 H 1.07999 * 119.98377 * 0.25869 * 4 3 2 31 31 H 1.08002 * 119.91950 * 180.02562 * 5 4 3 32 32 H 1.07997 * 120.01698 * 180.02562 * 8 6 5 33 33 H 0.97001 * 120.00182 * 180.02562 * 10 9 8 34 34 H 1.09004 * 109.47169 * 300.00658 * 11 10 9 35 35 H 1.09007 * 109.47105 * 60.00125 * 11 10 9 36 36 H 0.97001 * 120.00088 * 359.97438 * 14 12 11 37 37 H 1.09004 * 109.46978 * 299.99828 * 15 14 12 38 38 H 1.08999 * 109.47288 * 59.98913 * 15 14 12 39 39 H 0.97001 * 120.00213 * 0.02562 * 18 16 15 40 40 H 0.96993 * 120.00599 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 1.2937 2.3744 -0.0058 5 6 1.9222 3.6061 -0.0112 6 6 3.3037 3.6816 -0.0117 7 17 4.0865 5.2311 -0.0191 8 6 4.0625 2.5251 -0.0059 9 6 3.4377 1.2866 -0.0001 10 7 4.2030 0.1148 0.0052 11 6 5.6658 0.1952 0.0053 12 6 6.2455 -1.1958 0.0109 13 8 5.5091 -2.1595 0.0140 14 7 7.5821 -1.3689 0.0124 15 6 8.1456 -2.7211 0.0173 16 6 9.6503 -2.6383 0.0175 17 8 10.1980 -1.5563 0.0134 18 7 10.3872 -3.7667 0.0222 19 6 11.7561 -3.6915 0.0218 20 1 12.2440 -2.7279 0.0182 21 6 12.5160 -4.8548 0.0261 22 7 11.9225 -6.0273 0.0300 23 14 14.3812 -4.7522 0.0263 24 1 14.8366 -4.0218 1.2365 25 1 14.9523 -6.1229 0.0319 26 1 14.8373 -4.0302 -1.1885 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2151 2.3189 -0.0062 31 1 1.3333 4.5114 -0.0153 32 1 5.1407 2.5863 -0.0058 33 1 3.7649 -0.7506 0.0089 34 1 6.0006 0.7244 -0.8869 35 1 6.0001 0.7321 0.8931 36 1 8.1710 -0.5981 0.0096 37 1 7.8104 -3.2512 0.9089 38 1 7.8115 -3.2572 -0.8710 39 1 9.9491 -4.6322 0.0250 40 1 12.4528 -6.8394 0.0333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343512051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:34 Heat of formation + Delta-G solvation = -110.161099 kcal Electronic energy + Delta-G solvation = -25598.012619 eV Core-core repulsion = 21438.057387 eV Total energy + Delta-G solvation = -4159.955232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 12.99 seconds Orbital eigenvalues (eV) -41.43384 -40.94662 -39.95417 -38.63495 -37.38846 -36.33891 -36.05431 -35.35300 -33.38738 -31.47993 -31.01349 -29.59796 -28.04500 -27.46184 -26.08172 -23.28397 -22.89757 -21.52163 -21.38166 -20.09945 -19.61390 -18.65822 -17.84392 -17.72143 -17.12441 -17.08864 -16.84296 -16.64487 -16.35999 -15.95464 -15.93768 -15.73537 -15.33944 -15.15754 -14.72434 -14.59566 -14.31930 -14.05939 -13.90479 -13.54311 -13.48098 -13.30353 -12.90401 -12.81077 -12.73621 -12.47381 -12.17659 -12.14211 -11.77806 -11.68448 -11.56488 -11.20140 -11.08029 -10.57195 -10.27836 -10.09601 -9.48516 -8.51452 -8.25089 -6.01752 0.23937 0.44723 1.22798 1.37592 1.42809 1.44365 1.53336 1.74586 1.90461 2.26684 2.33851 2.60933 2.69084 3.10760 3.15721 3.58913 3.80916 4.05388 4.19839 4.24698 4.28336 4.30535 4.38694 4.42253 4.43269 4.43278 4.45643 4.68642 4.77090 4.80077 5.17825 5.24615 5.33542 5.37810 5.56229 5.90540 5.94670 6.35090 6.46813 6.51204 6.69993 7.02114 7.03877 7.43531 7.93407 8.65053 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.001849 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.674304 B =15135.829096 C =16665.753250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.339 6.339 3 C 0.049 3.951 4 C -0.148 4.148 5 C -0.131 4.131 6 C -0.029 4.029 7 Cl -0.073 7.073 8 C -0.170 4.170 9 C 0.195 3.805 10 N -0.733 5.733 11 C 0.112 3.888 12 C 0.511 3.489 13 O -0.574 6.574 14 N -0.700 5.700 15 C 0.122 3.878 16 C 0.432 3.568 17 O -0.623 6.623 18 N -0.560 5.560 19 C -0.337 4.337 20 H 0.087 0.913 21 C -0.011 4.011 22 N -0.916 5.916 23 Si 0.997 3.003 24 H -0.270 1.270 25 H -0.273 1.273 26 H -0.270 1.270 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.162 0.838 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.411 0.589 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.418 0.582 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.399 0.601 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.366 16.548 -0.073 28.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.254 6.254 3 C 0.001 3.999 4 C -0.167 4.167 5 C -0.152 4.152 6 C -0.056 4.056 7 Cl -0.044 7.044 8 C -0.194 4.194 9 C 0.091 3.909 10 N -0.367 5.367 11 C -0.015 4.015 12 C 0.298 3.702 13 O -0.454 6.454 14 N -0.355 5.355 15 C -0.006 4.006 16 C 0.219 3.781 17 O -0.511 6.511 18 N -0.195 5.195 19 C -0.467 4.467 20 H 0.105 0.895 21 C -0.212 4.212 22 N -0.556 5.556 23 Si 0.820 3.180 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.195 1.195 27 H 0.086 0.914 28 H 0.128 0.872 29 H 0.086 0.914 30 H 0.179 0.821 31 H 0.168 0.832 32 H 0.166 0.834 33 H 0.248 0.752 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.257 0.743 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.233 0.767 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.064 16.306 -0.072 28.246 hybrid contribution 0.818 -0.567 0.003 0.995 sum -22.246 15.740 -0.069 27.251 Atomic orbital electron populations 1.23302 0.76348 1.05259 1.02394 1.86031 1.23480 1.26355 1.89498 1.18727 0.90324 0.85930 1.04968 1.21189 1.01137 0.90213 1.04210 1.20844 0.91989 0.98688 1.03664 1.20595 0.93081 0.86063 1.05911 1.98366 1.81134 1.27855 1.97027 1.20437 1.00886 0.88634 1.09442 1.17112 0.87631 0.87012 0.99140 1.44238 1.03550 1.06443 1.82472 1.21117 0.81722 0.92824 1.05850 1.20888 0.81752 0.92133 0.75382 1.90689 1.59775 1.43289 1.51672 1.45578 1.06751 1.09214 1.73936 1.20784 0.89814 0.85666 1.04368 1.20410 0.89505 0.84540 0.83609 1.90477 1.73833 1.28760 1.57993 1.41850 1.06642 1.07629 1.63400 1.19703 0.81947 0.94575 1.50434 0.89472 1.26136 1.05291 0.93979 0.95805 1.69669 1.38592 0.98107 1.49224 0.84929 0.76286 0.77673 0.79122 1.19473 1.19731 1.19463 0.91407 0.87175 0.91418 0.82067 0.83179 0.83441 0.75160 0.86827 0.86816 0.74326 0.88671 0.88681 0.76716 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.62 9.74 -93.88 -0.91 -7.53 16 3 C 0.05 0.95 6.70 22.59 0.15 1.10 16 4 C -0.15 -2.15 9.03 22.34 0.20 -1.95 16 5 C -0.13 -1.94 9.82 22.31 0.22 -1.72 16 6 C -0.03 -0.51 6.32 22.32 0.14 -0.37 16 7 Cl -0.07 -1.22 28.95 -2.72 -0.08 -1.30 16 8 C -0.17 -3.17 9.09 22.41 0.20 -2.97 16 9 C 0.19 4.08 6.67 38.22 0.25 4.34 16 10 N -0.73 -16.55 5.70 -342.70 -1.95 -18.50 16 11 C 0.11 2.23 5.40 85.63 0.46 2.70 16 12 C 0.51 14.06 7.90 87.66 0.69 14.75 16 13 O -0.57 -19.59 15.67 -3.04 -0.05 -19.64 16 14 N -0.70 -20.60 5.53 -466.80 -2.58 -23.18 16 15 C 0.12 4.17 6.15 85.63 0.53 4.70 16 16 C 0.43 19.20 7.85 87.66 0.69 19.89 16 17 O -0.62 -30.94 15.24 -3.04 -0.05 -30.98 16 18 N -0.56 -27.48 5.29 -307.00 -1.62 -29.11 16 19 C -0.34 -18.27 9.68 84.04 0.81 -17.46 16 20 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 21 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 22 N -0.92 -48.17 13.05 21.66 0.28 -47.89 16 23 Si 1.00 41.27 29.55 68.60 2.03 43.29 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H 0.07 0.51 7.65 -2.39 -0.02 0.49 16 28 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.51 7.67 -2.39 -0.02 0.49 16 30 H 0.16 1.38 6.30 -2.91 -0.02 1.37 16 31 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.15 2.37 6.74 -2.91 -0.02 2.35 16 33 H 0.41 10.78 6.80 -92.71 -0.63 10.15 16 34 H 0.11 1.82 7.95 -2.39 -0.02 1.80 16 35 H 0.11 1.82 7.95 -2.38 -0.02 1.80 16 36 H 0.42 11.80 7.44 -92.71 -0.69 11.12 16 37 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 38 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.40 18.84 7.90 -92.71 -0.73 18.10 16 40 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -67.04 364.33 0.08 -66.96 By element: Atomic # 1 Polarization: 44.58 SS G_CDS: -0.92 Total: 43.66 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: 5.93 Total: 24.22 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -5.87 Total: -118.68 kcal Atomic # 8 Polarization: -57.15 SS G_CDS: -1.01 Total: -58.16 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -67.04 0.08 -66.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343512051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.203 kcal (2) G-P(sol) polarization free energy of solvation -67.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.99 seconds