Wall clock time and date at job start Tue Mar 31 2020 23:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42894 * 109.47106 * 2 1 4 4 C 1.35997 * 117.00433 * 179.97438 * 3 2 1 5 5 C 1.38691 * 119.98830 * 0.02562 * 4 3 2 6 6 C 1.38105 * 120.02828 * 179.97438 * 5 4 3 7 7 C 1.38839 * 120.00614 * 359.97438 * 6 5 4 8 8 N 1.40152 * 120.01199 * 179.97438 * 7 6 5 9 9 C 1.34783 * 119.99564 * 33.27816 * 8 7 6 10 10 O 1.21588 * 120.00301 * 5.32506 * 9 8 7 11 11 N 1.34773 * 119.99499 * 185.31461 * 9 8 7 12 12 C 1.46509 * 119.99712 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.46994 * 180.02562 * 12 11 9 14 14 O 1.21290 * 119.99917 * 0.02562 * 13 12 11 15 15 N 1.34770 * 119.99531 * 180.02562 * 13 12 11 16 16 C 1.37101 * 119.99751 * 180.02562 * 15 13 12 17 17 H 1.08006 * 119.99915 * 359.97438 * 16 15 13 18 18 C 1.38951 * 120.00168 * 180.02562 * 16 15 13 19 19 N 1.31412 * 119.99748 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00207 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46952 * 89.99568 * 20 18 16 22 22 H 1.48491 * 109.47271 * 209.99567 * 20 18 16 23 23 H 1.48506 * 109.46871 * 330.00102 * 20 18 16 24 24 C 1.38814 * 119.98034 * 359.76805 * 7 6 5 25 25 C 1.38209 * 119.97227 * 0.50624 * 24 7 6 26 26 Cl 1.73602 * 120.00195 * 179.74224 * 25 24 7 27 27 H 1.09000 * 109.47781 * 299.99965 * 1 2 3 28 28 H 1.09003 * 109.46975 * 60.00541 * 1 2 3 29 29 H 1.08999 * 109.47400 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47149 * 239.99366 * 2 1 3 31 31 H 1.09003 * 109.46975 * 119.99459 * 2 1 3 32 32 H 1.08003 * 119.98331 * 0.02562 * 5 4 3 33 33 H 1.08006 * 119.99492 * 180.02562 * 6 5 4 34 34 H 0.97000 * 120.00244 * 213.28408 * 8 7 6 35 35 H 0.96996 * 120.00446 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.47100 * 300.00060 * 12 11 9 37 37 H 1.09005 * 109.46675 * 60.00444 * 12 11 9 38 38 H 0.96999 * 120.00443 * 0.02562 * 15 13 12 39 39 H 0.96998 * 119.99847 * 180.02562 * 19 18 16 40 40 H 1.08004 * 120.01167 * 180.25312 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.1992 0.4255 0.0005 6 6 5.5685 0.6056 0.0005 7 6 6.1001 1.8882 0.0000 8 7 7.4896 2.0711 0.0006 9 6 8.2854 1.1911 -0.6390 10 8 7.7945 0.2942 -1.2969 11 7 9.6252 1.3056 -0.5494 12 6 10.4902 0.3495 -1.2451 13 6 11.9336 0.6960 -0.9846 14 8 12.2122 1.6476 -0.2861 15 7 12.9146 -0.0516 -1.5277 16 6 14.2276 0.2632 -1.2903 17 1 14.4758 1.1106 -0.6683 18 6 15.2392 -0.5072 -1.8506 19 7 14.9372 -1.5380 -2.6078 20 14 17.0282 -0.0778 -1.5277 21 1 17.4972 -0.7918 -0.3130 22 1 17.8536 -0.4874 -2.6922 23 1 17.1561 1.3872 -1.3210 24 6 5.2549 2.9894 -0.0054 25 6 3.8848 2.8082 0.0004 26 17 2.8271 4.1848 0.0004 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.7860 -0.5723 -0.0003 33 1 6.2258 -0.2514 0.0001 34 1 7.8786 2.8309 0.4613 35 1 10.0169 2.0210 -0.0244 36 1 10.2869 -0.6571 -0.8796 37 1 10.2932 0.3939 -2.3163 38 1 12.6917 -0.8125 -2.0866 39 1 15.6433 -2.0760 -2.9987 40 1 5.6679 3.9873 -0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348798706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:46 Heat of formation + Delta-G solvation = -82.480724 kcal Electronic energy + Delta-G solvation = -25625.164467 eV Core-core repulsion = 21466.409545 eV Total energy + Delta-G solvation = -4158.754921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.90302 -39.95308 -38.47857 -37.72013 -36.62130 -34.56182 -34.47427 -33.76183 -32.06647 -31.42721 -31.06422 -29.04811 -27.26152 -24.63620 -24.45147 -23.02968 -21.98551 -20.80611 -19.68860 -18.73173 -18.58555 -18.15270 -17.60719 -16.48449 -16.37483 -15.68492 -15.51195 -15.33215 -14.83975 -14.68376 -14.43649 -14.17987 -14.10613 -14.07739 -13.89199 -13.52251 -13.09255 -12.79711 -12.74179 -12.28921 -12.26489 -12.10985 -11.77209 -11.66829 -11.42845 -11.20559 -11.15376 -11.05354 -10.49145 -10.36809 -10.26039 -9.95389 -9.67924 -9.12419 -8.93997 -8.69303 -8.14820 -7.89847 -6.55583 -3.97836 0.89696 1.02354 1.89921 2.55610 2.85087 3.02899 3.09050 3.19874 3.25038 3.50199 3.69294 4.02471 4.20566 4.42589 4.54812 4.57591 4.79664 4.81791 4.85942 4.92821 5.08734 5.12958 5.23012 5.35452 5.40603 5.44522 5.65841 5.79248 5.90190 5.95456 5.99837 6.00777 6.10830 6.55577 6.59508 6.86569 7.02212 7.42151 7.87463 7.96893 8.39656 8.52602 9.00242 9.34268 9.81745 10.61141 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.028750 B = 0.001733 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.693925 B =16151.595645 C =16959.167856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.306 6.306 4 C 0.119 3.881 5 C -0.176 4.176 6 C -0.074 4.074 7 C 0.153 3.847 8 N -0.686 5.686 9 C 0.705 3.295 10 O -0.580 6.580 11 N -0.716 5.716 12 C 0.127 3.873 13 C 0.427 3.573 14 O -0.598 6.598 15 N -0.547 5.547 16 C -0.306 4.306 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.893 5.893 20 Si 0.934 3.066 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.269 1.269 24 C -0.106 4.106 25 C -0.049 4.049 26 Cl -0.058 7.058 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.410 0.590 35 H 0.409 0.591 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.396 0.604 39 H 0.275 0.725 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.347 3.805 5.375 26.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.220 6.220 4 C 0.072 3.928 5 C -0.196 4.196 6 C -0.095 4.095 7 C 0.057 3.943 8 N -0.334 5.334 9 C 0.405 3.595 10 O -0.458 6.458 11 N -0.373 5.373 12 C -0.001 4.001 13 C 0.212 3.788 14 O -0.485 6.485 15 N -0.182 5.182 16 C -0.436 4.436 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.533 5.533 20 Si 0.760 3.240 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.127 4.127 25 C -0.077 4.077 26 Cl -0.029 7.029 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.165 0.835 34 H 0.246 0.754 35 H 0.247 0.753 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.230 0.770 39 H 0.085 0.915 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -25.591 3.698 5.111 26.357 hybrid contribution 1.251 0.243 0.150 1.283 sum -24.340 3.941 5.262 25.212 Atomic orbital electron populations 1.21763 0.92608 1.02857 1.03592 1.22831 0.95998 0.81812 1.01632 1.86145 1.17958 1.29318 1.88587 1.18556 0.83257 0.92199 0.98813 1.21091 0.93414 0.97883 1.07165 1.21161 0.94571 0.97040 0.96705 1.17165 0.81991 0.93049 1.02070 1.42545 1.03965 1.30024 1.56880 1.15800 0.81485 0.82271 0.79971 1.90927 1.74212 1.35535 1.45110 1.44777 1.03279 1.34618 1.54640 1.20854 0.88969 0.92570 0.97697 1.19707 0.86285 0.86551 0.86220 1.90497 1.83329 1.31299 1.43355 1.41780 1.05578 1.27273 1.43547 1.19734 0.80497 1.13643 1.29690 0.87638 1.25334 1.00853 0.95473 0.96011 1.69612 1.34607 1.17149 1.31976 0.85803 0.81175 0.79096 0.77899 1.20246 1.20775 1.19308 1.20535 0.90122 0.99075 1.02989 1.19726 0.90484 0.86278 1.11218 1.98361 1.65715 1.41698 1.97119 0.91502 0.91461 0.90334 0.91782 0.91857 0.84318 0.83455 0.75449 0.75278 0.89735 0.89735 0.76992 0.91538 0.83942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.28 37.16 0.38 -0.40 16 2 C 0.05 0.36 5.46 37.16 0.20 0.56 16 3 O -0.31 -3.08 9.59 -19.73 -0.19 -3.27 16 4 C 0.12 1.29 6.68 -39.21 -0.26 1.02 16 5 C -0.18 -1.82 9.03 -39.46 -0.36 -2.17 16 6 C -0.07 -0.89 8.65 -39.41 -0.34 -1.23 16 7 C 0.15 1.78 6.28 -83.62 -0.53 1.26 16 8 N -0.69 -7.88 5.36 -14.19 -0.08 -7.96 16 9 C 0.70 10.54 8.30 -86.91 -0.72 9.81 16 10 O -0.58 -10.29 14.03 5.29 0.07 -10.22 16 11 N -0.72 -11.09 5.53 -66.40 -0.37 -11.46 16 12 C 0.13 2.22 6.15 -5.19 -0.03 2.19 16 13 C 0.43 9.41 7.85 -10.99 -0.09 9.33 16 14 O -0.60 -14.76 15.24 5.55 0.08 -14.67 16 15 N -0.55 -13.18 5.29 -10.96 -0.06 -13.24 16 16 C -0.31 -8.15 9.68 -14.93 -0.14 -8.29 16 17 H 0.11 2.92 7.16 -52.48 -0.38 2.55 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.42 13.05 55.50 0.72 -22.70 16 20 Si 0.93 20.18 29.55 -169.99 -5.02 15.16 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 C -0.11 -1.09 9.74 -39.38 -0.38 -1.47 16 25 C -0.05 -0.54 6.33 -39.38 -0.25 -0.79 16 26 Cl -0.06 -0.60 28.50 -51.86 -1.48 -2.08 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 32 H 0.14 1.11 6.29 -52.48 -0.33 0.78 16 33 H 0.15 1.95 6.40 -52.48 -0.34 1.61 16 34 H 0.41 3.50 8.84 -40.82 -0.36 3.14 16 35 H 0.41 6.11 7.46 -40.82 -0.30 5.81 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.40 9.17 7.90 -40.82 -0.32 8.85 16 39 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 LS Contribution 363.84 15.07 5.48 5.48 Total: -1.00 -31.50 363.84 -7.93 -39.43 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -4.50 Total: 15.13 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -2.61 Total: 10.40 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.22 Total: -55.35 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.03 Total: -28.16 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.48 Total: -2.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.50 -7.93 -39.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348798706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.048 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds