Wall clock time and date at job start Tue Mar 31 2020 23:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47201 * 2 1 4 4 C 1.50704 * 109.46919 * 119.99992 * 2 1 3 5 5 H 1.07997 * 119.99998 * 114.48510 * 4 2 1 6 6 C 1.37878 * 120.00233 * 294.48703 * 4 2 1 7 7 N 1.31513 * 119.99984 * 164.73044 * 6 4 2 8 8 Si 1.86807 * 119.99741 * 344.73653 * 6 4 2 9 9 H 1.48503 * 109.46647 * 269.99882 * 8 6 4 10 10 H 1.48499 * 109.47234 * 29.99765 * 8 6 4 11 11 H 1.48502 * 109.46971 * 150.00060 * 8 6 4 12 12 N 1.46495 * 109.46901 * 239.99556 * 2 1 3 13 13 C 1.46497 * 120.00642 * 300.00272 * 12 2 1 14 14 S 1.65603 * 119.99881 * 120.00348 * 12 2 1 15 15 O 1.42101 * 106.40485 * 203.54002 * 14 12 2 16 16 O 1.42101 * 106.40115 * 336.46097 * 14 12 2 17 17 N 1.65606 * 107.21748 * 89.99931 * 14 12 2 18 18 C 1.47062 * 136.05465 * 269.62962 * 17 14 12 19 19 C 1.53760 * 87.88526 * 152.96558 * 18 17 14 20 20 N 1.46504 * 114.39382 * 272.67558 * 19 18 17 21 21 S 1.65593 * 119.99900 * 238.58326 * 20 19 18 22 22 C 1.81408 * 104.45013 * 65.00186 * 21 20 19 23 23 O 1.42103 * 104.27591 * 181.06949 * 21 20 19 24 24 O 1.42098 * 104.28316 * 308.93206 * 21 20 19 25 25 C 1.47058 * 136.05744 * 90.00475 * 17 14 12 26 26 H 1.09006 * 109.46748 * 293.77081 * 1 2 3 27 27 H 1.08998 * 109.46722 * 53.76668 * 1 2 3 28 28 H 1.08997 * 109.47439 * 173.77193 * 1 2 3 29 29 H 0.96992 * 120.00257 * 354.89831 * 7 6 4 30 30 H 1.09003 * 109.46946 * 89.99892 * 13 12 2 31 31 H 1.08993 * 109.47603 * 210.00313 * 13 12 2 32 32 H 1.09003 * 109.46733 * 330.00419 * 13 12 2 33 33 H 1.08997 * 113.47130 * 267.69557 * 18 17 14 34 34 H 1.09002 * 113.47361 * 38.14104 * 18 17 14 35 35 H 1.09001 * 114.08646 * 139.78090 * 19 18 17 36 36 H 0.96999 * 120.00097 * 58.58327 * 20 19 18 37 37 H 1.09005 * 109.47201 * 59.99953 * 22 21 20 38 38 H 1.09000 * 109.47318 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.47139 * 300.00240 * 22 21 20 40 40 H 1.09004 * 113.46674 * 321.86493 * 25 17 14 41 41 H 1.08999 * 113.47103 * 92.29926 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5778 -1.6375 1.1339 6 6 1.7955 -0.1769 2.4796 7 7 1.9570 -0.9192 3.5531 8 14 1.2450 1.6004 2.6470 9 1 2.4366 2.4779 2.7712 10 1 0.4648 1.9922 1.4458 11 1 0.3963 1.7438 3.8571 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 16 2.9704 0.1140 -2.2862 15 8 2.8228 -0.5647 -3.5259 16 8 2.6905 1.4971 -2.1193 17 7 4.5438 -0.1045 -1.8179 18 6 5.4978 0.6014 -0.9493 19 6 6.1986 -0.7477 -0.7188 20 7 5.6458 -1.5358 0.3856 21 16 6.6158 -1.9812 1.6515 22 6 7.0723 -0.4150 2.4450 23 8 5.7617 -2.7386 2.4979 24 8 7.7487 -2.5754 1.0330 25 6 5.6038 -1.0859 -2.0928 26 1 -0.3633 0.4143 0.9406 27 1 -0.3633 0.6074 -0.8289 28 1 -0.3634 -1.0216 -0.1115 29 1 2.1705 -1.8611 3.4639 30 1 0.7375 -2.1444 -1.9993 31 1 2.4628 -2.5820 -1.9862 32 1 1.5294 -2.5969 -0.4707 33 1 6.1149 1.3258 -1.4808 34 1 5.0421 1.0148 -0.0496 35 1 7.2868 -0.6871 -0.7055 36 1 4.7116 -1.7966 0.3752 37 1 6.1714 0.0971 2.7832 38 1 7.7183 -0.6154 3.2997 39 1 7.6009 0.2144 1.7292 40 1 5.2384 -2.1102 -2.1674 41 1 6.2489 -0.8064 -2.9258 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599422854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:53 Heat of formation + Delta-G solvation = -94.652603 kcal Electronic energy + Delta-G solvation = -28402.024368 eV Core-core repulsion = 24380.229292 eV Total energy + Delta-G solvation = -4021.795076 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -39.61347 -36.92010 -36.86553 -36.40901 -35.80666 -35.44110 -33.21547 -32.63741 -29.89492 -29.39723 -27.54524 -26.04400 -25.72768 -24.69381 -21.32005 -20.53388 -19.51617 -18.46396 -17.74810 -17.62397 -17.21363 -16.95070 -16.27040 -16.00835 -15.73668 -15.16030 -14.58705 -14.42485 -13.91943 -13.69227 -13.37246 -13.25465 -13.14198 -13.03219 -12.95313 -12.75687 -12.13271 -12.06880 -11.96877 -11.90146 -11.84421 -11.81740 -11.73166 -11.62849 -11.38903 -11.31780 -11.00730 -10.88767 -10.79584 -10.56732 -10.14850 -9.69020 -9.39282 -9.21241 -9.03465 -8.49707 -8.16687 -6.52226 -4.21068 0.38921 0.94221 2.75220 3.23217 3.31139 3.38797 3.50686 3.88510 3.90165 4.20980 4.33020 4.38226 4.56406 4.67882 4.79172 4.89890 5.06314 5.13704 5.24493 5.41081 5.45095 5.52008 5.68708 5.75263 5.95225 6.00860 6.11554 6.17273 6.32284 6.43573 6.48454 6.57849 6.63417 6.93884 7.16031 7.25451 7.41320 7.88661 8.28480 8.79639 9.47751 10.83868 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.009874 B = 0.007158 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.910327 B = 3910.965594 C = 5634.545275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.244 3.756 3 H 0.048 0.952 4 C -0.613 4.613 5 H 0.068 0.932 6 C 0.040 3.960 7 N -0.894 5.894 8 Si 1.026 2.974 9 H -0.285 1.285 10 H -0.268 1.268 11 H -0.284 1.284 12 N -0.982 5.982 13 C 0.106 3.894 14 S 2.802 3.198 15 O -0.990 6.990 16 O -0.978 6.978 17 N -1.048 6.048 18 C 0.108 3.892 19 C 0.112 3.888 20 N -1.090 6.090 21 S 2.612 3.388 22 C -0.673 4.673 23 O -0.944 6.944 24 O -0.967 6.967 25 C 0.125 3.875 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.049 0.951 29 H 0.275 0.725 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.430 0.570 37 H 0.137 0.863 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.126 1.550 -6.607 12.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.139 3.861 3 H 0.065 0.935 4 C -0.652 4.652 5 H 0.086 0.914 6 C -0.168 4.168 7 N -0.527 5.527 8 Si 0.854 3.146 9 H -0.212 1.212 10 H -0.193 1.193 11 H -0.210 1.210 12 N -0.824 5.824 13 C -0.041 4.041 14 S 2.813 3.187 15 O -0.974 6.974 16 O -0.962 6.962 17 N -0.887 5.887 18 C -0.020 4.020 19 C 0.000 4.000 20 N -0.849 5.849 21 S 2.704 3.296 22 C -0.823 4.823 23 O -0.935 6.935 24 O -0.957 6.957 25 C -0.003 4.003 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.137 0.863 36 H 0.268 0.732 37 H 0.156 0.844 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.099 0.901 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.649 2.405 -6.074 11.653 hybrid contribution -0.139 -0.697 -0.690 0.991 sum 9.510 1.708 -6.764 11.794 Atomic orbital electron populations 1.22407 0.98496 1.00377 0.99816 1.19057 0.91335 0.92828 0.82848 0.93457 1.22183 1.41005 1.11402 0.90569 0.91417 1.25553 0.94364 1.04910 0.91976 1.70757 1.42472 1.08714 1.30714 0.84374 0.77705 0.76088 0.76472 1.21174 1.19338 1.21000 1.57593 1.63815 1.21584 1.39418 1.21226 0.99098 0.81648 1.02100 1.01229 0.71441 0.73206 0.72818 1.93550 1.85644 1.76445 1.41762 1.93567 1.83501 1.32339 1.86834 1.60592 1.25853 1.39284 1.62941 1.23086 0.89473 0.95041 0.94371 1.22133 0.97623 0.92183 0.88036 1.55342 1.26166 1.69111 1.34302 1.04772 0.74051 0.76655 0.74126 1.30543 1.13040 1.24509 1.14191 1.93685 1.65253 1.67422 1.67108 1.93591 1.53092 1.73976 1.75076 1.22745 0.87511 0.93746 0.96327 0.92279 0.95554 0.93157 0.91465 0.93709 0.93060 0.89900 0.89044 0.89169 0.86299 0.73200 0.84401 0.85686 0.85635 0.90051 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.57 37.16 0.32 -2.85 16 2 C 0.24 5.32 2.17 -69.08 -0.15 5.17 16 3 H 0.05 1.08 5.54 -51.93 -0.29 0.80 16 4 C -0.61 -14.65 8.37 -34.44 -0.29 -14.94 16 5 H 0.07 1.69 6.89 -52.49 -0.36 1.32 16 6 C 0.04 1.02 5.33 -17.82 -0.09 0.93 16 7 N -0.89 -24.96 13.70 55.43 0.76 -24.20 16 8 Si 1.03 23.15 26.17 -169.99 -4.45 18.70 16 9 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16 10 H -0.27 -5.71 5.54 56.52 0.31 -5.40 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.98 -18.81 3.12 -115.86 -0.36 -19.17 16 13 C 0.11 1.79 9.16 59.85 0.55 2.34 16 14 S 2.80 51.51 6.64 -107.50 -0.71 50.80 16 15 O -0.99 -19.43 17.21 -57.17 -0.98 -20.41 16 16 O -0.98 -20.62 16.70 -57.17 -0.95 -21.58 16 17 N -1.05 -15.08 4.29 -125.07 -0.54 -15.61 16 18 C 0.11 1.24 8.56 -8.38 -0.07 1.17 16 19 C 0.11 1.15 4.66 -67.68 -0.32 0.84 16 20 N -1.09 -14.28 5.72 -4.61 -0.03 -14.30 16 21 S 2.61 34.57 6.07 -107.50 -0.65 33.92 16 22 C -0.67 -6.60 10.89 101.05 1.10 -5.50 16 23 O -0.94 -17.41 18.08 -57.54 -1.04 -18.45 16 24 O -0.97 -14.11 17.62 -57.54 -1.01 -15.13 16 25 C 0.12 1.37 8.53 -8.52 -0.07 1.29 16 26 H 0.06 1.26 5.06 -51.93 -0.26 0.99 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 1.00 7.47 -51.93 -0.39 0.61 16 29 H 0.27 7.80 8.73 -40.82 -0.36 7.45 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.76 7.79 -51.93 -0.40 0.36 16 32 H 0.08 1.47 6.92 -51.93 -0.36 1.11 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.12 0.82 7.82 -51.93 -0.41 0.41 16 36 H 0.43 6.57 8.42 -34.46 -0.29 6.28 16 37 H 0.14 1.53 8.14 -51.92 -0.42 1.10 16 38 H 0.12 1.03 8.14 -51.92 -0.42 0.60 16 39 H 0.12 0.86 8.14 -51.92 -0.42 0.44 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -35.76 359.23 -9.39 -45.15 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.81 Total: 6.42 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 0.97 Total: -11.55 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -0.17 Total: -73.29 kcal Atomic # 8 Polarization: -71.57 SS G_CDS: -3.99 Total: -75.56 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.45 Total: 18.70 kcal Atomic # 16 Polarization: 86.08 SS G_CDS: -1.37 Total: 84.72 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.76 -9.39 -45.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599422854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.504 kcal (2) G-P(sol) polarization free energy of solvation -35.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds