Wall clock time and date at job start Wed Apr 1 2020 00:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34224 * 117.00467 * 2 1 4 4 O 1.20832 * 119.99689 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00558 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47336 * 180.02562 * 5 3 2 7 7 C 1.36936 * 119.99554 * 275.87921 * 6 5 3 8 8 H 1.07997 * 119.99920 * 146.91498 * 7 6 5 9 9 C 1.38819 * 120.00342 * 326.91418 * 7 6 5 10 10 N 1.31613 * 119.99532 * 335.78671 * 9 7 6 11 11 Si 1.86797 * 120.00064 * 155.78739 * 9 7 6 12 12 H 1.48490 * 109.47310 * 90.00137 * 11 9 7 13 13 H 1.48504 * 109.46865 * 210.00261 * 11 9 7 14 14 H 1.48500 * 109.47245 * 329.99517 * 11 9 7 15 15 S 1.65597 * 120.00190 * 95.88099 * 6 5 3 16 16 O 1.42093 * 104.27610 * 333.92573 * 15 6 5 17 17 O 1.42100 * 104.27379 * 206.06951 * 15 6 5 18 18 C 1.81396 * 104.45159 * 90.00273 * 15 6 5 19 19 C 1.52994 * 109.47411 * 180.02562 * 18 15 6 20 20 H 1.09003 * 110.43267 * 307.53812 * 19 18 15 21 21 C 1.54263 * 110.49128 * 184.99460 * 19 18 15 22 22 C 1.53868 * 106.60446 * 217.71110 * 21 19 18 23 23 C 1.54265 * 106.59643 * 359.97438 * 22 21 19 24 24 F 1.39901 * 110.48710 * 142.28448 * 23 22 21 25 25 F 1.39895 * 110.49105 * 264.79903 * 23 22 21 26 26 C 1.54889 * 110.48747 * 70.22104 * 19 18 15 27 27 H 1.09001 * 109.47561 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47363 * 300.00150 * 1 2 3 29 29 H 1.09005 * 109.46756 * 60.00157 * 1 2 3 30 30 H 1.08996 * 109.47155 * 59.99795 * 5 3 2 31 31 H 1.09008 * 109.46991 * 299.99818 * 5 3 2 32 32 H 0.97004 * 119.99764 * 180.02562 * 10 9 7 33 33 H 1.09008 * 109.46907 * 299.99674 * 18 15 6 34 34 H 1.08994 * 109.47606 * 59.99341 * 18 15 6 35 35 H 1.09004 * 110.03307 * 336.99836 * 21 19 18 36 36 H 1.09004 * 110.02867 * 98.42051 * 21 19 18 37 37 H 1.08999 * 110.03419 * 119.28013 * 22 21 19 38 38 H 1.09001 * 110.03700 * 240.71745 * 22 21 19 39 39 H 1.09001 * 110.75651 * 274.93768 * 26 19 18 40 40 H 1.09001 * 110.75905 * 38.30719 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.0598 3.3709 -1.1784 8 1 3.8343 4.4268 -1.2015 9 6 4.4288 2.7144 -2.3446 10 7 5.1436 1.6112 -2.2806 11 14 3.9108 3.3969 -4.0045 12 1 4.9490 4.3361 -4.4994 13 1 3.7519 2.2806 -4.9709 14 1 2.6194 4.1163 -3.8628 15 16 4.3569 3.4317 1.4279 16 8 3.6157 2.7162 2.4066 17 8 4.1021 4.8069 1.1767 18 6 6.1351 3.1420 1.6385 19 6 6.6081 3.7958 2.9383 20 1 6.3058 4.8426 2.9697 21 6 8.1392 3.6715 3.0794 22 6 8.4243 3.4186 4.5701 23 6 7.0565 3.3987 5.2832 24 9 7.0437 2.4283 6.2908 25 9 6.7631 4.6589 5.8149 26 6 6.0504 3.0306 4.1642 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 3.9564 0.7805 -0.8891 31 1 3.9557 0.7808 0.8909 32 1 5.4018 1.1526 -3.0955 33 1 6.3259 2.0696 1.6813 34 1 6.6759 3.5738 0.7964 35 1 8.5024 2.8348 2.4826 36 1 8.6199 4.5957 2.7587 37 1 8.9258 2.4592 4.6969 38 1 9.0434 4.2201 4.9732 39 1 5.0490 3.3804 4.4150 40 1 6.0510 1.9560 3.9818 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601350874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:34 Heat of formation + Delta-G solvation = -277.102128 kcal Electronic energy + Delta-G solvation = -29378.219474 eV Core-core repulsion = 24762.379656 eV Total energy + Delta-G solvation = -4615.839819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.099 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -49.94985 -48.08943 -41.28704 -38.88527 -37.95708 -37.78143 -36.84982 -36.58459 -33.51435 -32.16098 -30.09918 -29.68627 -27.90695 -26.45486 -25.77706 -22.22248 -22.19025 -21.49533 -20.31702 -19.15327 -18.77945 -18.59205 -18.51094 -17.75738 -17.41257 -17.27909 -17.07013 -16.73870 -16.59174 -16.32145 -15.83773 -15.24779 -15.14997 -14.77157 -14.50231 -14.44033 -14.41380 -14.23285 -13.93324 -13.69810 -13.37867 -13.09188 -13.04684 -12.90441 -12.85458 -12.81559 -12.78094 -12.72301 -12.61459 -12.33717 -12.29784 -12.08772 -11.71139 -11.65922 -11.57922 -11.53928 -11.21312 -11.05255 -9.78719 -8.44407 -6.05931 -0.36080 1.36596 1.42511 1.49203 1.60646 1.81568 2.19665 2.45971 2.64928 2.82421 2.84188 3.05594 3.24827 3.35970 3.54385 3.84585 3.95366 4.00825 4.10834 4.18280 4.24131 4.27130 4.34392 4.36596 4.41139 4.48962 4.64241 4.67879 4.78722 4.87081 4.88534 4.95850 5.14385 5.19451 5.23438 5.43843 5.57251 6.35526 6.77088 6.94060 7.25188 8.55769 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013792 B = 0.004150 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.704528 B = 6745.692901 C = 7909.854316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.443 3.557 4 O -0.535 6.535 5 C 0.126 3.874 6 N -0.818 5.818 7 C -0.287 4.287 8 H 0.083 0.917 9 C 0.015 3.985 10 N -0.847 5.847 11 Si 0.964 3.036 12 H -0.261 1.261 13 H -0.265 1.265 14 H -0.284 1.284 15 S 2.513 3.487 16 O -1.010 7.010 17 O -1.012 7.012 18 C -0.614 4.614 19 C -0.086 4.086 20 H 0.079 0.921 21 C -0.105 4.105 22 C -0.150 4.150 23 C 0.272 3.728 24 F -0.203 7.203 25 F -0.207 7.207 26 C -0.179 4.179 27 H 0.139 0.861 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.150 0.850 31 H 0.122 0.878 32 H 0.285 0.715 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.954 -5.139 5.307 10.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.285 3.715 4 O -0.424 6.424 5 C -0.003 4.003 6 N -0.642 5.642 7 C -0.429 4.429 8 H 0.101 0.899 9 C -0.194 4.194 10 N -0.485 5.485 11 Si 0.788 3.212 12 H -0.186 1.186 13 H -0.189 1.189 14 H -0.209 1.209 15 S 2.619 3.381 16 O -1.000 7.000 17 O -1.002 7.002 18 C -0.742 4.742 19 C -0.106 4.106 20 H 0.097 0.903 21 C -0.143 4.143 22 C -0.188 4.188 23 C 0.236 3.764 24 F -0.184 7.184 25 F -0.188 7.188 26 C -0.217 4.217 27 H 0.157 0.843 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.166 0.834 31 H 0.140 0.860 32 H 0.095 0.905 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.138 0.862 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.223 -4.497 5.989 9.737 hybrid contribution -0.471 0.435 -0.652 0.915 sum 5.751 -4.062 5.337 8.835 Atomic orbital electron populations 1.23498 0.75675 1.05602 1.01901 1.86492 1.24531 1.32941 1.84305 1.25331 0.93969 0.81202 0.71005 1.90580 1.67690 1.37770 1.46371 1.21027 0.85132 0.85719 1.08415 1.52778 1.71241 1.18977 1.21195 1.19454 1.42706 0.95885 0.84808 0.89892 1.26041 0.93954 0.97150 1.02265 1.69836 1.29402 1.18037 1.31267 0.85371 0.78984 0.78861 0.78032 1.18581 1.18934 1.20922 1.10247 0.79840 0.74207 0.73839 1.93378 1.71161 1.73614 1.61875 1.93366 1.85788 1.36289 1.84772 1.30647 1.27910 1.10964 1.04644 1.21684 0.99251 0.98919 0.90740 0.90271 1.22197 0.92018 1.05133 0.94959 1.23174 0.92768 1.07289 0.95581 1.22198 0.99596 0.71764 0.82831 1.92980 1.97639 1.63337 1.64474 1.92981 1.95010 1.42538 1.88282 1.23873 0.98941 1.04810 0.94125 0.84267 0.92779 0.92648 0.83351 0.85989 0.90484 0.83575 0.84309 0.88140 0.88837 0.86181 0.87374 0.90461 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.95 16 2 O -0.37 -13.44 10.56 -51.36 -0.54 -13.98 16 3 C 0.44 19.75 7.99 71.23 0.57 20.31 16 4 O -0.54 -27.71 16.06 21.95 0.35 -27.36 16 5 C 0.13 5.34 5.47 85.63 0.47 5.81 16 6 N -0.82 -38.46 2.32 -347.17 -0.80 -39.27 16 7 C -0.29 -14.46 8.95 84.04 0.75 -13.71 16 8 H 0.08 4.50 7.31 -2.91 -0.02 4.48 16 9 C 0.02 0.71 4.98 84.86 0.42 1.13 16 10 N -0.85 -37.31 11.27 21.65 0.24 -37.06 16 11 Si 0.96 38.00 29.62 68.60 2.03 40.03 16 12 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 13 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 14 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 15 S 2.51 111.95 5.17 -56.49 -0.29 111.66 16 16 O -1.01 -47.31 15.78 -127.65 -2.01 -49.33 16 17 O -1.01 -53.21 16.85 -127.65 -2.15 -55.36 16 18 C -0.61 -19.53 5.50 71.98 0.40 -19.13 16 19 C -0.09 -2.41 2.85 -9.72 -0.03 -2.44 16 20 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 21 C -0.10 -2.03 6.37 31.32 0.20 -1.83 16 22 C -0.15 -2.66 6.41 31.32 0.20 -2.46 16 23 C 0.27 6.92 2.49 31.68 0.08 7.00 16 24 F -0.20 -5.43 17.16 44.97 0.77 -4.66 16 25 F -0.21 -6.01 17.17 44.97 0.77 -5.24 16 26 C -0.18 -5.13 5.03 31.89 0.16 -4.97 16 27 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.05 1.57 8.13 -2.39 -0.02 1.55 16 29 H 0.05 1.59 8.13 -2.38 -0.02 1.57 16 30 H 0.15 6.28 5.31 -2.39 -0.01 6.27 16 31 H 0.12 4.38 7.57 -2.38 -0.02 4.36 16 32 H 0.28 11.57 8.31 -92.71 -0.77 10.80 16 33 H 0.15 3.91 8.02 -2.39 -0.02 3.89 16 34 H 0.14 4.31 8.14 -2.39 -0.02 4.29 16 35 H 0.10 1.66 7.84 -2.38 -0.02 1.64 16 36 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.12 1.62 8.11 -2.39 -0.02 1.60 16 38 H 0.11 1.58 8.12 -2.39 -0.02 1.56 16 39 H 0.08 2.55 7.63 -2.39 -0.02 2.53 16 40 H 0.12 3.12 7.96 -2.39 -0.02 3.10 16 Total: -1.00 -68.08 354.89 3.85 -64.22 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 1.07 Total: 24.67 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 4.42 Total: -8.34 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -0.56 Total: -76.33 kcal Atomic # 8 Polarization: -141.67 SS G_CDS: -4.35 Total: -146.02 kcal Atomic # 9 Polarization: -11.44 SS G_CDS: 1.54 Total: -9.90 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Atomic # 16 Polarization: 111.95 SS G_CDS: -0.29 Total: 111.66 kcal Total: -68.08 3.85 -64.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601350874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.879 kcal (2) G-P(sol) polarization free energy of solvation -68.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -277.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds