Wall clock time and date at job start Tue Mar 31 2020 22:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.69641 * 2 1 4 4 C 1.53244 * 109.58244 * 239.65446 * 2 1 3 5 5 N 1.46376 * 109.48870 * 182.54927 * 4 2 1 6 6 S 1.65596 * 119.65059 * 245.06789 * 5 4 2 7 7 O 1.42096 * 106.40456 * 204.57928 * 6 5 4 8 8 O 1.42106 * 106.40082 * 337.50026 * 6 5 4 9 9 C 1.76203 * 107.21924 * 91.03828 * 6 5 4 10 10 C 1.37638 * 120.12170 * 251.62021 * 9 6 5 11 11 C 1.38624 * 120.24001 * 179.74331 * 10 9 6 12 12 C 1.38661 * 120.50079 * 0.51340 * 11 10 9 13 13 C 1.37590 * 120.24696 * 359.76431 * 12 11 10 14 14 C 1.40693 * 120.12503 * 71.89380 * 9 6 5 15 15 C 1.41391 * 120.24427 * 0.02562 * 14 9 6 16 16 H 1.07995 * 120.00294 * 314.69159 * 15 14 9 17 17 C 1.39953 * 119.99819 * 134.69688 * 15 14 9 18 18 N 1.30827 * 119.99739 * 344.42652 * 17 15 14 19 19 Si 1.86794 * 120.00145 * 164.43152 * 17 15 14 20 20 H 1.48508 * 109.47254 * 64.78424 * 19 17 15 21 21 H 1.48492 * 109.47438 * 184.78499 * 19 17 15 22 22 H 1.48499 * 109.47227 * 304.78591 * 19 17 15 23 23 C 1.46379 * 120.70435 * 65.08982 * 5 4 2 24 24 C 1.53237 * 109.48802 * 294.91195 * 23 5 4 25 25 H 1.09000 * 109.58472 * 297.72037 * 24 23 5 26 26 C 1.53007 * 109.58322 * 177.44972 * 24 23 5 27 27 S 1.81737 * 108.79855 * 57.65644 * 24 23 5 28 28 H 1.09003 * 109.47259 * 176.00894 * 1 2 3 29 29 H 1.08999 * 109.47191 * 296.00887 * 1 2 3 30 30 H 1.08998 * 109.47221 * 56.00908 * 1 2 3 31 31 H 1.08997 * 109.46972 * 302.55943 * 4 2 1 32 32 H 1.08997 * 109.46689 * 62.54851 * 4 2 1 33 33 H 1.07989 * 119.88546 * 0.02562 * 10 9 6 34 34 H 1.07997 * 119.74765 * 180.25642 * 11 10 9 35 35 H 1.07996 * 119.87215 * 179.74859 * 12 11 10 36 36 H 1.08007 * 120.12466 * 179.97438 * 13 12 11 37 37 H 0.97002 * 119.99994 * 180.02562 * 18 17 15 38 38 H 1.09003 * 109.46805 * 54.91898 * 23 5 4 39 39 H 1.09005 * 109.46769 * 174.90747 * 23 5 4 40 40 H 1.09002 * 109.47157 * 59.99971 * 26 24 23 41 41 H 1.09000 * 109.46843 * 179.97438 * 26 24 23 42 42 H 1.08994 * 109.47040 * 300.00102 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2460 5 7 3.5061 -0.7814 -1.2133 6 16 4.3804 0.0257 -2.3649 7 8 5.6358 -0.6343 -2.4514 8 8 3.5146 0.1981 -3.4785 9 6 4.7085 1.6385 -1.7355 10 6 4.0641 2.7320 -2.2679 11 6 4.3164 4.0013 -1.7711 12 6 5.2266 4.1860 -0.7414 13 6 5.8864 3.1078 -0.1980 14 6 5.6343 1.8139 -0.6908 15 6 6.3068 0.6986 -0.1404 16 1 5.7569 -0.1996 0.0988 17 6 7.6852 0.7585 0.0944 18 7 8.4029 1.7011 -0.4607 19 14 8.5002 -0.5072 1.2003 20 1 8.3915 -1.8513 0.5782 21 1 9.9326 -0.1591 1.3793 22 1 7.8244 -0.5177 2.5225 23 6 4.2040 -1.5397 -0.1738 24 6 3.9337 -0.9016 1.1930 25 1 4.3286 0.1143 1.2064 26 6 4.6099 -1.7291 2.2880 27 16 2.1392 -0.8651 1.4777 28 1 -0.3634 -1.0252 -0.0715 29 1 -0.3633 0.4506 0.9236 30 1 -0.3633 0.5745 -0.8520 31 1 1.6443 -1.7435 -1.2638 32 1 1.7190 -0.1955 -2.1391 33 1 3.3561 2.6003 -3.0726 34 1 3.8033 4.8533 -2.1920 35 1 5.4183 5.1798 -0.3648 36 1 6.5952 3.2540 0.6038 37 1 9.3583 1.7424 -0.2982 38 1 3.8447 -2.5688 -0.1717 39 1 5.2754 -1.5294 -0.3740 40 1 5.6847 -1.7599 2.1087 41 1 4.4169 -1.2733 3.2592 42 1 4.2104 -2.7431 2.2762 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601358508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:36 Heat of formation + Delta-G solvation = -67.605838 kcal Electronic energy + Delta-G solvation = -27543.581799 eV Core-core repulsion = 23933.808822 eV Total energy + Delta-G solvation = -3609.772977 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 24.22 seconds Orbital eigenvalues (eV) -39.51704 -38.73833 -38.23151 -36.70506 -35.61582 -35.13773 -32.82439 -32.00842 -31.51188 -28.18449 -27.19716 -26.21674 -23.60990 -22.99395 -22.78213 -22.28494 -20.12674 -19.42430 -19.07288 -17.89290 -17.41919 -17.21512 -16.87661 -16.22119 -16.02692 -15.91832 -15.52770 -15.15617 -14.98043 -14.68627 -14.40269 -14.14850 -13.96699 -13.77354 -13.47334 -13.40543 -13.18873 -13.03151 -12.88845 -12.82683 -12.79346 -12.72574 -12.65694 -12.42402 -12.23924 -12.11640 -11.98387 -11.62401 -11.44746 -11.20640 -10.99112 -10.69664 -10.15763 -9.85435 -9.31080 -8.71789 -8.56740 -6.54346 -0.32096 0.46344 0.81790 0.93374 1.36823 1.45495 1.48068 1.58799 2.12737 2.19633 2.68384 2.92607 3.34213 3.50873 3.69010 3.76928 3.89499 4.07000 4.17133 4.23987 4.27898 4.41179 4.41834 4.53444 4.64601 4.68623 4.76218 4.82643 4.83949 4.89048 4.91657 5.04505 5.12292 5.14170 5.23830 5.26634 5.30804 5.47677 5.56701 5.68939 5.82249 5.92215 6.09247 6.43406 6.77786 6.81986 8.31632 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.007395 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.176364 B = 3785.307333 C = 4864.958116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.071 4.071 3 H 0.073 0.927 4 C 0.117 3.883 5 N -0.996 5.996 6 S 2.706 3.294 7 O -0.983 6.983 8 O -1.002 7.002 9 C -0.777 4.777 10 C -0.020 4.020 11 C -0.237 4.237 12 C -0.072 4.072 13 C -0.182 4.182 14 C 0.185 3.815 15 C -0.515 4.515 16 H 0.122 0.878 17 C 0.051 3.949 18 N -0.828 5.828 19 Si 0.942 3.058 20 H -0.253 1.253 21 H -0.274 1.274 22 H -0.233 1.233 23 C 0.111 3.889 24 C -0.077 4.077 25 H 0.087 0.913 26 C -0.131 4.131 27 S -0.256 6.256 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.288 0.712 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.508 -5.028 4.925 12.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.202 4.202 3 H 0.092 0.908 4 C -0.010 4.010 5 N -0.832 5.832 6 S 2.804 3.196 7 O -0.973 6.973 8 O -0.993 6.993 9 C -0.871 4.871 10 C -0.040 4.040 11 C -0.257 4.257 12 C -0.091 4.091 13 C -0.202 4.202 14 C 0.181 3.819 15 C -0.544 4.544 16 H 0.139 0.861 17 C -0.165 4.165 18 N -0.454 5.454 19 Si 0.762 3.238 20 H -0.177 1.177 21 H -0.199 1.199 22 H -0.156 1.156 23 C -0.016 4.016 24 C -0.208 4.208 25 H 0.105 0.895 26 C -0.189 4.189 27 S -0.028 6.028 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.618 -5.736 4.941 13.040 hybrid contribution 1.737 1.261 -0.287 2.166 sum -8.880 -4.475 4.655 10.980 Atomic orbital electron populations 1.21566 0.88966 1.04170 1.03605 1.23634 1.01295 1.00735 0.94494 0.90809 1.21819 0.77820 1.03378 0.97974 1.57435 1.15478 1.64646 1.45635 1.00932 0.72019 0.73946 0.72717 1.93499 1.42880 1.74832 1.86108 1.93413 1.67833 1.87784 1.50225 1.30538 1.20672 1.20104 1.15769 1.20649 0.95025 0.92625 0.95652 1.20961 1.05217 0.96731 1.02778 1.21274 0.94596 0.98146 0.95050 1.21415 1.02507 0.93840 1.02446 1.17254 0.85534 0.93880 0.85274 1.20513 0.94108 1.01126 1.38619 0.86137 1.26526 0.97819 0.97679 0.94475 1.69840 1.08669 1.32489 1.34391 0.85835 0.77993 0.79550 0.80409 1.17724 1.19860 1.15558 1.21927 0.98429 0.96097 0.85109 1.23744 0.93979 1.04389 0.98639 0.89459 1.21611 1.00337 1.00272 0.96719 1.86396 1.06254 1.77367 1.32818 0.90201 0.91344 0.89539 0.87394 0.87910 0.85776 0.85094 0.85713 0.88703 0.90176 0.87514 0.88154 0.91272 0.91002 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 9.22 71.98 0.66 -1.66 16 2 C -0.07 -1.84 3.32 30.68 0.10 -1.74 16 3 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.12 3.17 5.54 86.48 0.48 3.65 16 5 N -1.00 -33.99 3.10 -515.49 -1.60 -35.58 16 6 S 2.71 116.98 5.23 -56.49 -0.30 116.68 16 7 O -0.98 -49.17 14.92 -128.00 -1.91 -51.08 16 8 O -1.00 -43.84 15.44 -128.00 -1.98 -45.82 16 9 C -0.78 -36.24 5.99 22.73 0.14 -36.10 16 10 C -0.02 -0.85 9.53 22.22 0.21 -0.64 16 11 C -0.24 -9.54 10.05 22.46 0.23 -9.32 16 12 C -0.07 -3.04 10.02 22.22 0.22 -2.82 16 13 C -0.18 -8.78 8.75 22.73 0.20 -8.59 16 14 C 0.18 9.17 5.25 -21.29 -0.11 9.06 16 15 C -0.51 -24.95 5.85 23.46 0.14 -24.81 16 16 H 0.12 5.25 1.70 -2.91 0.00 5.25 16 17 C 0.05 2.48 5.14 85.26 0.44 2.92 16 18 N -0.83 -43.02 12.36 21.83 0.27 -42.75 16 19 Si 0.94 35.93 29.17 68.60 2.00 37.94 16 20 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 21 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 22 H -0.23 -7.91 7.11 99.48 0.71 -7.20 16 23 C 0.11 3.56 4.64 86.48 0.40 3.96 16 24 C -0.08 -2.37 2.59 30.68 0.08 -2.29 16 25 H 0.09 3.23 6.38 -2.39 -0.02 3.22 16 26 C -0.13 -3.36 9.22 71.98 0.66 -2.69 16 27 S -0.26 -6.98 21.03 -56.49 -1.19 -8.17 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.11 2.39 8.14 -2.39 -0.02 2.38 16 32 H 0.10 2.80 6.78 -2.39 -0.02 2.78 16 33 H 0.12 4.84 7.34 -2.92 -0.02 4.82 16 34 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 36 H 0.09 4.67 7.66 -2.91 -0.02 4.65 16 37 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 38 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.10 3.72 4.82 -2.38 -0.01 3.71 16 40 H 0.07 1.83 7.72 -2.39 -0.02 1.82 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -62.91 349.64 0.19 -62.71 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: 1.04 Total: 37.14 kcal Atomic # 6 Polarization: -74.92 SS G_CDS: 3.85 Total: -71.07 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -1.33 Total: -78.33 kcal Atomic # 8 Polarization: -93.01 SS G_CDS: -3.89 Total: -96.89 kcal Atomic # 14 Polarization: 35.93 SS G_CDS: 2.00 Total: 37.94 kcal Atomic # 16 Polarization: 110.00 SS G_CDS: -1.48 Total: 108.51 kcal Total: -62.91 0.19 -62.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601358508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.893 kcal (2) G-P(sol) polarization free energy of solvation -62.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.22 seconds