Wall clock time and date at job start Wed Apr 1 2020 00:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81400 * 103.00230 * 2 1 4 4 C 1.52991 * 109.47444 * 184.51375 * 3 2 1 5 5 H 1.09003 * 109.87245 * 322.05470 * 4 3 2 6 6 C 1.54326 * 109.88602 * 200.87966 * 4 3 2 7 7 C 1.55157 * 102.94254 * 218.38977 * 6 4 3 8 8 C 1.54687 * 101.67537 * 35.33175 * 7 6 4 9 9 N 1.47019 * 109.88530 * 83.06888 * 4 3 2 10 10 S 1.65604 * 125.65084 * 298.32457 * 9 4 3 11 11 O 1.42106 * 106.39817 * 44.25323 * 10 9 4 12 12 O 1.42094 * 106.40453 * 177.17009 * 10 9 4 13 13 C 1.76194 * 107.21702 * 290.71415 * 10 9 4 14 14 C 1.37644 * 120.13193 * 115.57066 * 13 10 9 15 15 C 1.38604 * 120.25082 * 180.02562 * 14 13 10 16 16 C 1.38661 * 120.50270 * 359.97438 * 15 14 13 17 17 C 1.37591 * 120.24727 * 0.02562 * 16 15 14 18 18 C 1.40701 * 120.12799 * 295.29467 * 13 10 9 19 19 C 1.41392 * 120.24383 * 0.02562 * 18 13 10 20 20 H 1.08005 * 119.99472 * 329.42524 * 19 18 13 21 21 C 1.39940 * 120.00331 * 149.42523 * 19 18 13 22 22 N 1.30830 * 120.00230 * 164.20176 * 21 19 18 23 23 Si 1.86798 * 119.99876 * 344.19938 * 21 19 18 24 24 H 1.48512 * 109.46944 * 93.03137 * 23 21 19 25 25 H 1.48503 * 109.47527 * 213.03080 * 23 21 19 26 26 H 1.48494 * 109.47257 * 333.03322 * 23 21 19 27 27 H 1.09001 * 109.46987 * 184.95903 * 1 2 3 28 28 H 1.08997 * 109.47045 * 304.96141 * 1 2 3 29 29 H 1.08996 * 109.47241 * 64.95923 * 1 2 3 30 30 H 1.09001 * 109.47140 * 64.50757 * 3 2 1 31 31 H 1.09009 * 109.46979 * 304.51252 * 3 2 1 32 32 H 1.08997 * 110.71328 * 336.75220 * 6 4 3 33 33 H 1.08996 * 110.71988 * 99.84151 * 6 4 3 34 34 H 1.09000 * 110.99957 * 153.57842 * 7 6 4 35 35 H 1.08997 * 110.99952 * 277.38861 * 7 6 4 36 36 H 1.09006 * 110.39079 * 204.36027 * 8 7 6 37 37 H 1.09005 * 110.23680 * 82.11652 * 8 7 6 38 38 H 1.08003 * 119.87066 * 0.02562 * 14 13 10 39 39 H 1.08003 * 119.74658 * 179.97438 * 15 14 13 40 40 H 1.08004 * 119.87630 * 179.97438 * 16 15 14 41 41 H 1.08004 * 120.12666 * 179.97438 * 17 16 15 42 42 H 0.97003 * 119.99845 * 185.01022 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7379 1.9410 -0.1135 5 1 4.2437 1.1687 0.4662 6 6 4.1462 3.3383 0.3987 7 6 5.2688 3.7557 -0.5876 8 6 4.7677 3.1352 -1.9130 9 7 4.1468 1.8562 -1.5232 10 16 3.9491 0.5396 -2.5080 11 8 2.6311 0.0608 -2.2779 12 8 4.4234 0.9235 -3.7913 13 6 5.0424 -0.7144 -1.9281 14 6 4.5381 -1.8912 -1.4228 15 6 5.3960 -2.8792 -0.9654 16 6 6.7695 -2.6952 -1.0114 17 6 7.2959 -1.5269 -1.5124 18 6 6.4347 -0.5191 -1.9850 19 6 6.9644 0.6835 -2.5068 20 1 6.4294 1.2199 -3.2766 21 6 8.1817 1.1786 -2.0260 22 7 8.8255 2.0979 -2.6985 23 14 8.8876 0.5271 -0.4239 24 1 9.8163 -0.5953 -0.7124 25 1 9.6246 1.6134 0.2704 26 1 7.7832 0.0452 0.4438 27 1 -0.3633 -1.0238 0.0888 28 1 -0.3633 0.5889 0.8422 29 1 -0.3633 0.4350 -0.9310 30 1 1.8729 2.2210 0.9276 31 1 1.7365 2.2525 -0.8469 32 1 3.3061 4.0303 0.3420 33 1 4.5271 3.2791 1.4183 34 1 5.3384 4.8408 -0.6637 35 1 6.2261 3.3244 -0.2950 36 1 5.6035 2.9602 -2.5904 37 1 4.0302 3.7882 -2.3799 38 1 3.4699 -2.0454 -1.3826 39 1 4.9914 -3.7993 -0.5701 40 1 7.4287 -3.4716 -0.6518 41 1 8.3661 -1.3854 -1.5469 42 1 9.7028 2.3889 -2.4044 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601375076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:13 Heat of formation + Delta-G solvation = -58.806623 kcal Electronic energy + Delta-G solvation = -27448.753192 eV Core-core repulsion = 23839.361777 eV Total energy + Delta-G solvation = -3609.391414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.64122 -39.47979 -37.84031 -36.38636 -35.60307 -32.47014 -32.35273 -31.74499 -31.66222 -29.64450 -27.18421 -26.57521 -23.74974 -22.90363 -22.73897 -21.96519 -19.66258 -19.43721 -18.60850 -18.02090 -17.43091 -16.99252 -16.81930 -16.13492 -15.86837 -15.37292 -15.23378 -15.07641 -14.85797 -14.65686 -14.45286 -14.32877 -13.99492 -13.85042 -13.81104 -13.65008 -13.48102 -13.00452 -12.94353 -12.81125 -12.69679 -12.63107 -12.35409 -12.24042 -12.10850 -11.84410 -11.68510 -11.60253 -11.50581 -11.19701 -10.94331 -10.63295 -9.93475 -9.75717 -9.54767 -8.94411 -7.78818 -6.68039 -0.06964 0.43037 0.80951 0.98276 1.22424 1.33978 1.43869 1.90432 2.05642 2.36542 2.52864 3.07965 3.39350 3.65157 3.73602 3.82606 4.11468 4.26806 4.28329 4.31649 4.32880 4.44201 4.46564 4.48521 4.65477 4.69087 4.74549 4.77089 4.95912 4.97980 5.00055 5.04893 5.09272 5.17386 5.26030 5.33351 5.43533 5.48982 5.58853 5.73207 5.81450 5.88061 6.13760 6.32623 6.58437 6.73745 8.07440 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.006826 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.214885 B = 4101.014373 C = 5030.416536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.265 6.265 3 C -0.095 4.095 4 C 0.160 3.840 5 H 0.064 0.936 6 C -0.103 4.103 7 C -0.122 4.122 8 C 0.115 3.885 9 N -0.994 5.994 10 S 2.692 3.308 11 O -0.940 6.940 12 O -1.023 7.023 13 C -0.775 4.775 14 C 0.017 3.983 15 C -0.256 4.256 16 C -0.042 4.042 17 C -0.266 4.266 18 C 0.146 3.854 19 C -0.482 4.482 20 H 0.094 0.906 21 C 0.068 3.932 22 N -0.815 5.815 23 Si 0.951 3.049 24 H -0.261 1.261 25 H -0.269 1.269 26 H -0.251 1.251 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.105 0.895 42 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.424 3.212 11.221 15.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.040 6.040 3 C -0.244 4.244 4 C 0.053 3.947 5 H 0.082 0.918 6 C -0.143 4.143 7 C -0.161 4.161 8 C -0.010 4.010 9 N -0.832 5.832 10 S 2.789 3.211 11 O -0.931 6.931 12 O -1.014 7.014 13 C -0.868 4.868 14 C -0.003 4.003 15 C -0.276 4.276 16 C -0.060 4.060 17 C -0.286 4.286 18 C 0.142 3.858 19 C -0.509 4.509 20 H 0.111 0.889 21 C -0.152 4.152 22 N -0.439 5.439 23 Si 0.775 3.225 24 H -0.186 1.186 25 H -0.195 1.195 26 H -0.175 1.175 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.140 0.860 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.122 0.878 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.211 2.501 10.368 14.092 hybrid contribution 0.606 0.271 0.137 0.678 sum -8.605 2.772 10.504 13.859 Atomic orbital electron populations 1.23339 0.92943 1.06826 1.05001 1.87316 1.09348 1.11999 1.95296 1.24078 0.98955 0.94866 1.06538 1.21207 0.91757 1.00512 0.81251 0.91810 1.22690 0.99073 0.92847 0.99692 1.22672 0.98287 1.01706 0.93427 1.22035 0.96780 0.83518 0.98623 1.58376 1.74978 1.26834 1.22993 1.01680 0.74629 0.72728 0.72047 1.94033 1.34610 1.80470 1.83965 1.93403 1.83460 1.83682 1.40815 1.30307 1.08515 1.17452 1.30515 1.20731 0.99392 0.91006 0.89173 1.20982 0.93194 1.01328 1.12050 1.21245 0.95905 0.95649 0.93237 1.21353 0.98343 0.96737 1.12151 1.17331 0.90459 0.92154 0.85887 1.20126 1.05558 1.06204 1.19047 0.88864 1.26678 0.95156 0.92926 1.00419 1.69652 1.12690 1.23701 1.37830 0.85725 0.79521 0.78248 0.79037 1.18632 1.19520 1.17489 0.87845 0.88971 0.91099 0.85981 0.89791 0.87639 0.88155 0.87542 0.92680 0.92827 0.90765 0.85254 0.84820 0.84777 0.87771 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.47 10.76 113.37 1.22 -1.25 16 2 S -0.27 -8.15 17.92 -56.49 -1.01 -9.16 16 3 C -0.10 -2.43 5.05 71.98 0.36 -2.06 16 4 C 0.16 4.75 3.22 45.34 0.15 4.89 16 5 H 0.06 2.12 7.95 -2.39 -0.02 2.10 16 6 C -0.10 -2.20 6.39 31.78 0.20 -1.99 16 7 C -0.12 -3.31 7.07 31.91 0.23 -3.09 16 8 C 0.12 4.08 6.78 86.78 0.59 4.67 16 9 N -0.99 -37.50 3.27 -484.70 -1.58 -39.09 16 10 S 2.69 122.75 5.12 -56.49 -0.29 122.46 16 11 O -0.94 -40.42 11.89 -128.00 -1.52 -41.94 16 12 O -1.02 -55.40 15.03 -128.00 -1.92 -57.33 16 13 C -0.78 -37.36 5.96 22.73 0.14 -37.22 16 14 C 0.02 0.73 9.53 22.22 0.21 0.94 16 15 C -0.26 -10.18 10.05 22.46 0.23 -9.95 16 16 C -0.04 -1.72 10.02 22.22 0.22 -1.50 16 17 C -0.27 -12.61 7.13 22.73 0.16 -12.45 16 18 C 0.15 7.53 5.12 -21.29 -0.11 7.42 16 19 C -0.48 -26.10 8.00 23.46 0.19 -25.91 16 20 H 0.09 5.61 4.61 -2.91 -0.01 5.59 16 21 C 0.07 3.41 5.43 85.25 0.46 3.88 16 22 N -0.82 -41.44 13.92 21.83 0.30 -41.13 16 23 Si 0.95 40.07 24.47 68.60 1.68 41.75 16 24 H -0.26 -10.58 6.63 99.48 0.66 -9.92 16 25 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 26 H -0.25 -10.89 6.84 99.48 0.68 -10.21 16 27 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.12 2.18 7.99 -2.39 -0.02 2.16 16 31 H 0.08 2.19 8.11 -2.39 -0.02 2.17 16 32 H 0.11 1.63 7.85 -2.39 -0.02 1.61 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 36 H 0.05 2.36 6.27 -2.38 -0.01 2.35 16 37 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.13 5.26 7.20 -2.91 -0.02 5.24 16 39 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 40 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.10 4.82 4.55 -2.91 -0.01 4.81 16 42 H 0.30 13.54 8.30 -92.71 -0.77 12.77 16 Total: -1.00 -68.19 348.67 0.85 -67.34 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.96 Total: 30.74 kcal Atomic # 6 Polarization: -77.88 SS G_CDS: 4.25 Total: -73.63 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -1.28 Total: -80.22 kcal Atomic # 8 Polarization: -95.82 SS G_CDS: -3.45 Total: -99.27 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 1.68 Total: 41.75 kcal Atomic # 16 Polarization: 114.60 SS G_CDS: -1.30 Total: 113.30 kcal Total: -68.19 0.85 -67.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601375076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.530 kcal (2) G-P(sol) polarization free energy of solvation -68.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds