Wall clock time and date at job start Tue Mar 31 2020 23:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34727 * 116.99651 * 2 1 4 4 O 1.21476 * 120.00354 * 0.02562 * 3 2 1 5 5 C 1.47696 * 119.99900 * 179.97438 * 3 2 1 6 6 N 1.32918 * 119.66266 * 0.02562 * 5 3 2 7 7 C 1.31263 * 121.72136 * 179.97438 * 6 5 3 8 8 C 1.39490 * 120.82891 * 359.97438 * 7 6 5 9 9 N 1.39421 * 120.38142 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99938 * 147.21242 * 9 8 7 11 11 O 1.21571 * 119.99793 * 354.71107 * 10 9 8 12 12 N 1.34781 * 119.99950 * 174.71604 * 10 9 8 13 13 C 1.46504 * 119.99897 * 359.97438 * 12 10 9 14 14 C 1.46494 * 119.99683 * 179.97438 * 12 10 9 15 15 H 1.08995 * 109.47539 * 0.02562 * 14 12 10 16 16 C 1.52995 * 109.47178 * 239.99672 * 14 12 10 17 17 C 1.50698 * 109.46941 * 120.00278 * 14 12 10 18 18 H 1.08004 * 120.00468 * 359.97438 * 17 14 12 19 19 C 1.37880 * 120.00015 * 180.02562 * 17 14 12 20 20 N 1.31514 * 119.99871 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99808 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.46855 * 179.97438 * 21 19 17 23 23 H 1.48490 * 109.47454 * 299.99705 * 21 19 17 24 24 H 1.48503 * 109.47320 * 60.00118 * 21 19 17 25 25 C 1.39267 * 119.23727 * 0.28305 * 8 7 6 26 26 C 1.38488 * 118.42096 * 359.45402 * 25 8 7 27 27 Cl 1.73594 * 120.44000 * 180.26414 * 26 25 8 28 28 H 1.08994 * 109.47340 * 299.99981 * 1 2 3 29 29 H 1.09003 * 109.47162 * 60.00378 * 1 2 3 30 30 H 1.09000 * 109.46603 * 179.97438 * 1 2 3 31 31 H 1.08008 * 119.58505 * 179.97438 * 7 6 5 32 32 H 0.97001 * 120.00345 * 327.21095 * 9 8 7 33 33 H 1.08999 * 109.47154 * 269.99998 * 13 12 10 34 34 H 1.08999 * 109.47076 * 30.00251 * 13 12 10 35 35 H 1.08999 * 109.46442 * 149.99912 * 13 12 10 36 36 H 1.09003 * 109.47639 * 300.00655 * 16 14 12 37 37 H 1.09003 * 109.47255 * 60.00669 * 16 14 12 38 38 H 1.09002 * 109.47560 * 180.02562 * 16 14 12 39 39 H 0.97003 * 119.99263 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.78524 * 179.70318 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4020 2.2192 0.0005 5 6 3.5386 1.2778 0.0006 6 7 4.2559 0.1589 0.0006 7 6 5.5684 0.1805 0.0006 8 6 6.2634 1.3899 0.0000 9 7 7.6576 1.4020 -0.0005 10 6 8.3227 2.3889 -0.6331 11 8 7.7113 3.2141 -1.2835 12 7 9.6657 2.4609 -0.5446 13 6 10.4024 1.4666 0.2397 14 6 10.3886 3.5333 -1.2326 15 1 9.6784 4.1705 -1.7594 16 6 11.3701 2.9245 -2.2360 17 6 11.1476 4.3554 -0.2231 18 1 11.0962 4.1045 0.8261 19 6 11.9067 5.4287 -0.6388 20 7 11.9689 5.7346 -1.9164 21 14 12.8469 6.4482 0.6126 22 1 13.5799 7.5353 -0.0848 23 1 11.8941 7.0387 1.5864 24 1 13.8150 5.5809 1.3309 25 6 5.5487 2.5852 0.0055 26 6 4.1651 2.5259 -0.0003 27 17 3.2223 3.9835 -0.0008 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 6.1170 -0.7499 0.0010 32 1 8.1489 0.7001 0.4544 33 1 10.4983 1.8138 1.2684 34 1 9.8629 0.5196 0.2246 35 1 11.3941 1.3268 -0.1906 36 1 12.0804 2.2875 -1.7088 37 1 10.8213 2.3299 -2.9662 38 1 11.9084 3.7224 -2.7476 39 1 12.5033 6.4895 -2.2088 40 1 6.0613 3.5357 0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603051071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:52 Heat of formation + Delta-G solvation = -53.766054 kcal Electronic energy + Delta-G solvation = -26936.273640 eV Core-core repulsion = 22778.763881 eV Total energy + Delta-G solvation = -4157.509760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 21.75 seconds Orbital eigenvalues (eV) -41.22733 -40.34125 -39.27448 -36.88027 -36.38355 -36.00605 -34.95944 -33.05573 -32.10102 -30.83255 -29.25449 -27.84269 -26.45810 -25.33613 -24.90560 -23.84135 -22.05152 -21.20479 -19.65657 -18.61738 -18.08863 -17.49496 -17.16897 -16.58388 -16.42659 -16.33439 -15.46034 -15.36356 -14.93854 -14.60207 -14.48419 -14.19441 -13.48632 -13.40523 -13.30197 -13.08991 -12.82127 -12.74909 -12.30229 -12.14154 -11.82455 -11.68766 -11.66818 -11.17554 -11.11894 -10.93327 -10.91030 -10.80631 -10.48584 -10.37421 -10.26367 -9.99037 -9.65794 -9.38625 -9.27096 -8.56071 -8.52324 -7.80736 -6.16838 -4.25593 0.19710 0.87474 1.87442 2.20744 2.38258 2.75889 3.22024 3.28172 3.29011 3.32658 3.64228 3.94372 4.13108 4.33150 4.44086 4.63519 4.70011 4.85025 4.91126 4.99081 5.14568 5.27314 5.34841 5.46711 5.76216 5.81236 5.89223 6.05968 6.12096 6.47279 6.50269 6.66240 6.79362 6.95437 7.25317 7.27074 7.52672 7.61784 7.65463 7.90933 8.06151 8.36062 8.71371 8.88825 9.41301 10.88450 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.020674 B = 0.002588 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.006236 B =10816.384142 C =11617.849620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.337 6.337 3 C 0.523 3.477 4 O -0.483 6.483 5 C 0.053 3.947 6 N -0.395 5.395 7 C 0.064 3.936 8 C 0.188 3.812 9 N -0.684 5.684 10 C 0.693 3.307 11 O -0.571 6.571 12 N -0.596 5.596 13 C 0.083 3.917 14 C 0.271 3.729 15 H 0.067 0.933 16 C -0.149 4.149 17 C -0.530 4.530 18 H 0.059 0.941 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.900 3.100 22 H -0.286 1.286 23 H -0.277 1.277 24 H -0.277 1.277 25 C -0.092 4.092 26 C 0.000 4.000 27 Cl -0.013 7.013 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.174 0.826 32 H 0.411 0.589 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.031 0.969 37 H 0.013 0.987 38 H 0.096 0.904 39 H 0.265 0.735 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.786 -13.705 5.412 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.253 6.253 3 C 0.365 3.635 4 O -0.369 6.369 5 C -0.084 4.084 6 N -0.106 5.106 7 C -0.102 4.102 8 C 0.086 3.914 9 N -0.333 5.333 10 C 0.394 3.606 11 O -0.447 6.447 12 N -0.330 5.330 13 C -0.061 4.061 14 C 0.171 3.829 15 H 0.085 0.915 16 C -0.207 4.207 17 C -0.568 4.568 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.524 5.524 21 Si 0.728 3.272 22 H -0.211 1.211 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.121 4.121 26 C -0.031 4.031 27 Cl 0.017 6.983 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.191 0.809 32 H 0.250 0.750 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.050 0.950 37 H 0.032 0.968 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -14.772 -13.240 4.780 20.405 hybrid contribution 1.192 1.092 0.900 1.851 sum -13.580 -12.148 5.680 19.085 Atomic orbital electron populations 1.23310 0.76232 1.03749 1.02600 1.86668 1.23029 1.31804 1.83793 1.20491 0.87516 0.81937 0.73520 1.90951 1.65768 1.35472 1.44698 1.19577 0.91356 0.88263 1.09250 1.67668 1.07197 1.28101 1.07614 1.22742 0.89290 0.96768 1.01421 1.18810 0.84214 0.94054 0.94332 1.42996 1.03336 1.30061 1.56881 1.16029 0.82992 0.81227 0.80312 1.90925 1.66793 1.41488 1.45544 1.47706 1.02838 1.30916 1.51501 1.21581 0.98320 0.89680 0.96470 1.18989 0.90527 0.82572 0.90766 0.91538 1.22128 0.99482 1.00739 0.98365 1.21240 1.29185 1.12934 0.93464 0.92268 1.24883 0.96387 0.96963 0.95445 1.69860 1.40294 1.28312 1.13920 0.86526 0.79796 0.79758 0.81136 1.21115 1.20214 1.20217 1.21706 0.90814 1.00761 0.98792 1.21768 0.92556 0.88860 0.99920 1.98433 1.71200 1.32959 1.95755 0.91821 0.91797 0.87972 0.80903 0.74970 0.92776 0.93530 0.90015 0.94993 0.96840 0.88533 0.92473 0.81036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.57 101.05 1.07 1.35 16 2 O -0.34 -4.05 10.38 -40.56 -0.42 -4.47 16 3 C 0.52 7.23 7.93 34.59 0.27 7.50 16 4 O -0.48 -7.22 13.72 -19.25 -0.26 -7.48 16 5 C 0.05 0.75 6.75 -83.01 -0.56 0.19 16 6 N -0.40 -5.14 10.10 -9.63 -0.10 -5.23 16 7 C 0.06 0.71 11.12 -17.33 -0.19 0.51 16 8 C 0.19 2.50 6.31 -83.56 -0.53 1.97 16 9 N -0.68 -9.04 5.21 -14.11 -0.07 -9.12 16 10 C 0.69 12.84 8.03 -86.91 -0.70 12.15 16 11 O -0.57 -12.85 13.36 5.30 0.07 -12.78 16 12 N -0.60 -11.34 2.75 -181.02 -0.50 -11.84 16 13 C 0.08 1.17 9.49 59.85 0.57 1.74 16 14 C 0.27 6.44 2.64 -69.09 -0.18 6.26 16 15 H 0.07 1.85 6.90 -51.93 -0.36 1.50 16 16 C -0.15 -3.31 8.95 37.15 0.33 -2.97 16 17 C -0.53 -13.46 8.37 -34.44 -0.29 -13.75 16 18 H 0.06 1.48 7.65 -52.48 -0.40 1.07 16 19 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.07 11.32 55.43 0.63 -23.44 16 21 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 22 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 C -0.09 -1.40 8.55 -39.11 -0.33 -1.73 16 26 C 0.00 0.00 6.37 -38.96 -0.25 -0.25 16 27 Cl -0.01 -0.19 26.02 -51.86 -1.35 -1.54 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.17 1.26 8.06 -52.48 -0.42 0.83 16 32 H 0.41 3.88 6.51 -40.82 -0.27 3.62 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.45 6.29 -51.93 -0.33 0.12 16 35 H 0.08 1.18 6.43 -51.93 -0.33 0.85 16 36 H 0.03 0.64 6.66 -51.93 -0.35 0.30 16 37 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.17 2.95 6.48 -52.49 -0.34 2.61 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -31.44 354.13 -6.93 -38.37 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -4.36 Total: 2.37 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: -0.88 Total: 14.58 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.04 Total: -49.63 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.61 Total: -24.73 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.35 Total: -1.54 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.44 -6.93 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603051071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.393 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.75 seconds