Wall clock time and date at job start Tue Mar 31 2020 23:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34727 * 116.99651 * 2 1 4 4 O 1.21476 * 120.00354 * 0.02562 * 3 2 1 5 5 C 1.47696 * 119.99900 * 179.97438 * 3 2 1 6 6 N 1.32918 * 119.66266 * 0.02562 * 5 3 2 7 7 C 1.31263 * 121.72136 * 179.97438 * 6 5 3 8 8 C 1.39490 * 120.82891 * 359.97438 * 7 6 5 9 9 N 1.39421 * 120.38142 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99938 * 147.21242 * 9 8 7 11 11 O 1.21571 * 119.99793 * 354.71107 * 10 9 8 12 12 N 1.34781 * 119.99950 * 174.71604 * 10 9 8 13 13 C 1.46504 * 119.99897 * 359.97438 * 12 10 9 14 14 C 1.46494 * 119.99683 * 179.97438 * 12 10 9 15 15 H 1.08995 * 109.47539 * 0.02562 * 14 12 10 16 16 C 1.52995 * 109.47178 * 239.99672 * 14 12 10 17 17 C 1.50698 * 109.46941 * 120.00278 * 14 12 10 18 18 H 1.08004 * 120.00468 * 359.97438 * 17 14 12 19 19 C 1.37880 * 120.00015 * 180.02562 * 17 14 12 20 20 N 1.31514 * 119.99871 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99808 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.46855 * 179.97438 * 21 19 17 23 23 H 1.48490 * 109.47454 * 299.99705 * 21 19 17 24 24 H 1.48503 * 109.47320 * 60.00118 * 21 19 17 25 25 C 1.39267 * 119.23727 * 0.28305 * 8 7 6 26 26 C 1.38488 * 118.42096 * 359.45402 * 25 8 7 27 27 Cl 1.73594 * 120.44000 * 180.26414 * 26 25 8 28 28 H 1.08994 * 109.47340 * 299.99981 * 1 2 3 29 29 H 1.09003 * 109.47162 * 60.00378 * 1 2 3 30 30 H 1.09000 * 109.46603 * 179.97438 * 1 2 3 31 31 H 1.08008 * 119.58505 * 179.97438 * 7 6 5 32 32 H 0.97001 * 120.00345 * 327.21095 * 9 8 7 33 33 H 1.08999 * 109.47154 * 269.99998 * 13 12 10 34 34 H 1.08999 * 109.47076 * 30.00251 * 13 12 10 35 35 H 1.08999 * 109.46442 * 149.99912 * 13 12 10 36 36 H 1.09003 * 109.47639 * 300.00655 * 16 14 12 37 37 H 1.09003 * 109.47255 * 60.00669 * 16 14 12 38 38 H 1.09002 * 109.47560 * 180.02562 * 16 14 12 39 39 H 0.97003 * 119.99263 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.78524 * 179.70318 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4020 2.2192 0.0005 5 6 3.5386 1.2778 0.0006 6 7 4.2559 0.1589 0.0006 7 6 5.5684 0.1805 0.0006 8 6 6.2634 1.3899 0.0000 9 7 7.6576 1.4020 -0.0005 10 6 8.3227 2.3889 -0.6331 11 8 7.7113 3.2141 -1.2835 12 7 9.6657 2.4609 -0.5446 13 6 10.4024 1.4666 0.2397 14 6 10.3886 3.5333 -1.2326 15 1 9.6784 4.1705 -1.7594 16 6 11.3701 2.9245 -2.2360 17 6 11.1476 4.3554 -0.2231 18 1 11.0962 4.1045 0.8261 19 6 11.9067 5.4287 -0.6388 20 7 11.9689 5.7346 -1.9164 21 14 12.8469 6.4482 0.6126 22 1 13.5799 7.5353 -0.0848 23 1 11.8941 7.0387 1.5864 24 1 13.8150 5.5809 1.3309 25 6 5.5487 2.5852 0.0055 26 6 4.1651 2.5259 -0.0003 27 17 3.2223 3.9835 -0.0008 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 6.1170 -0.7499 0.0010 32 1 8.1489 0.7001 0.4544 33 1 10.4983 1.8138 1.2684 34 1 9.8629 0.5196 0.2246 35 1 11.3941 1.3268 -0.1906 36 1 12.0804 2.2875 -1.7088 37 1 10.8213 2.3299 -2.9662 38 1 11.9084 3.7224 -2.7476 39 1 12.5033 6.4895 -2.2088 40 1 6.0613 3.5357 0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603051071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:26 Heat of formation + Delta-G solvation = -74.104857 kcal Electronic energy + Delta-G solvation = -26937.155597 eV Core-core repulsion = 22778.763881 eV Total energy + Delta-G solvation = -4158.391716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 20.90 seconds Orbital eigenvalues (eV) -42.35814 -41.49402 -40.46374 -37.97954 -37.50912 -37.40989 -36.33718 -34.82488 -33.24752 -32.12261 -30.79876 -28.63827 -27.71954 -27.26718 -26.03921 -24.90268 -23.42524 -22.43697 -21.06617 -19.83973 -19.22546 -18.72287 -18.43091 -18.10850 -17.53917 -17.41927 -17.07062 -16.56940 -16.24926 -16.06736 -15.56423 -15.38217 -14.96582 -14.58155 -14.43840 -14.31001 -14.05405 -14.01650 -13.46812 -13.26912 -13.10034 -13.08530 -12.91658 -12.73314 -12.69248 -12.64620 -12.28061 -12.13960 -12.13006 -11.77930 -11.60075 -11.34723 -11.16472 -10.86289 -10.55829 -10.49566 -9.76081 -9.27451 -8.13782 -6.29682 -0.89387 -0.19673 0.75848 1.13703 1.38847 1.43464 1.45652 1.51917 1.57414 2.01500 2.41085 2.49293 2.87073 3.01049 3.15160 3.41340 3.57331 3.62817 3.88002 4.31307 4.32883 4.37844 4.40522 4.63300 4.70076 4.73083 4.76204 4.83984 4.91565 5.03535 5.06970 5.18143 5.34642 5.40188 5.50493 5.65400 5.92984 6.11361 6.17739 6.26819 6.64449 6.77157 6.94301 7.34146 7.49145 8.90100 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.020674 B = 0.002588 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.006236 B =10816.384142 C =11617.849620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.342 6.342 3 C 0.522 3.478 4 O -0.501 6.501 5 C 0.049 3.951 6 N -0.399 5.399 7 C 0.093 3.907 8 C 0.182 3.818 9 N -0.658 5.658 10 C 0.691 3.309 11 O -0.619 6.619 12 N -0.603 5.603 13 C 0.076 3.924 14 C 0.277 3.723 15 H 0.013 0.987 16 C -0.134 4.134 17 C -0.536 4.536 18 H 0.062 0.938 19 C 0.017 3.983 20 N -0.916 5.916 21 Si 0.961 3.039 22 H -0.287 1.287 23 H -0.279 1.279 24 H -0.261 1.261 25 C -0.107 4.107 26 C -0.010 4.010 27 Cl -0.023 7.023 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.135 0.865 31 H 0.224 0.776 32 H 0.433 0.567 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.022 0.978 38 H 0.067 0.933 39 H 0.264 0.736 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.622 -16.822 6.953 22.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.257 6.257 3 C 0.365 3.635 4 O -0.389 6.389 5 C -0.087 4.087 6 N -0.109 5.109 7 C -0.073 4.073 8 C 0.080 3.920 9 N -0.310 5.310 10 C 0.392 3.608 11 O -0.499 6.499 12 N -0.336 5.336 13 C -0.066 4.066 14 C 0.175 3.825 15 H 0.031 0.969 16 C -0.193 4.193 17 C -0.575 4.575 18 H 0.081 0.919 19 C -0.183 4.183 20 N -0.555 5.555 21 Si 0.787 3.213 22 H -0.213 1.213 23 H -0.205 1.205 24 H -0.186 1.186 25 C -0.136 4.136 26 C -0.041 4.041 27 Cl 0.006 6.994 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.153 0.847 31 H 0.240 0.760 32 H 0.277 0.723 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.623 -16.439 6.372 22.906 hybrid contribution 1.042 1.975 0.423 2.273 sum -13.581 -14.464 6.795 20.972 Atomic orbital electron populations 1.23660 0.74019 1.06035 1.02828 1.86647 1.25188 1.30619 1.83228 1.20494 0.87480 0.82287 0.73248 1.90939 1.66138 1.36182 1.45626 1.19700 0.91925 0.88229 1.08868 1.67803 1.07867 1.27220 1.08010 1.23442 0.88590 0.97395 0.97855 1.18946 0.83963 0.94254 0.94836 1.42506 1.03232 1.29155 1.56065 1.16144 0.82828 0.81594 0.80194 1.90906 1.67770 1.43618 1.47624 1.47504 1.03279 1.30969 1.51893 1.21894 0.98457 0.90457 0.95771 1.18515 0.89587 0.83593 0.90830 0.96895 1.21906 0.99267 0.99993 0.98129 1.21531 1.28837 1.13244 0.93878 0.91934 1.25680 0.97470 0.98171 0.97012 1.70009 1.41114 1.28769 1.15612 0.85564 0.78616 0.78321 0.78830 1.21257 1.20506 1.18597 1.21553 0.91215 1.00725 1.00066 1.21774 0.92329 0.88993 1.00971 1.98421 1.71404 1.33663 1.95907 0.91499 0.91737 0.84665 0.75955 0.72349 0.92154 0.88441 0.90334 0.92985 0.95918 0.91418 0.92684 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.57 113.37 1.20 1.58 16 2 O -0.34 -7.63 10.38 -56.37 -0.58 -8.21 16 3 C 0.52 14.03 7.93 70.32 0.56 14.59 16 4 O -0.50 -14.95 13.72 19.91 0.27 -14.68 16 5 C 0.05 1.34 6.75 41.82 0.28 1.62 16 6 N -0.40 -9.29 10.10 -184.39 -1.86 -11.16 16 7 C 0.09 1.72 11.12 85.08 0.95 2.67 16 8 C 0.18 4.47 6.31 38.48 0.24 4.71 16 9 N -0.66 -15.78 5.21 -316.81 -1.65 -17.43 16 10 C 0.69 25.30 8.03 179.05 1.44 26.73 16 11 O -0.62 -28.93 13.36 -3.94 -0.05 -28.99 16 12 N -0.60 -22.45 2.75 -844.88 -2.33 -24.77 16 13 C 0.08 1.90 9.49 127.77 1.21 3.11 16 14 C 0.28 13.40 2.64 44.24 0.12 13.52 16 15 H 0.01 0.77 6.90 -2.39 -0.02 0.75 16 16 C -0.13 -6.01 8.95 71.98 0.64 -5.36 16 17 C -0.54 -27.45 8.37 25.60 0.21 -27.24 16 18 H 0.06 3.08 7.65 -2.91 -0.02 3.06 16 19 C 0.02 0.87 5.30 84.66 0.45 1.32 16 20 N -0.92 -51.15 11.32 21.45 0.24 -50.91 16 21 Si 0.96 41.62 29.54 68.60 2.03 43.65 16 22 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 C -0.11 -3.28 8.55 22.58 0.19 -3.09 16 26 C -0.01 -0.30 6.37 22.67 0.14 -0.15 16 27 Cl -0.02 -0.71 26.02 -2.72 -0.07 -0.79 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.22 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.43 6.25 6.51 -92.71 -0.60 5.64 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 1.40 6.29 -2.39 -0.02 1.39 16 35 H 0.08 2.04 6.43 -2.39 -0.02 2.02 16 36 H 0.05 2.06 6.66 -2.39 -0.02 2.05 16 37 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 3.44 6.07 -2.39 -0.01 3.43 16 39 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 40 H 0.14 5.28 6.48 -2.91 -0.02 5.26 16 Total: -1.00 -72.60 354.13 4.14 -68.46 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.51 Total: 10.82 kcal Atomic # 6 Polarization: 26.37 SS G_CDS: 7.64 Total: 34.01 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -5.60 Total: -104.27 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -0.36 Total: -51.88 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.07 Total: -0.79 kcal Total: -72.60 4.14 -68.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603051071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.647 kcal (2) G-P(sol) polarization free energy of solvation -72.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.90 seconds