Wall clock time and date at job start Wed Apr 1 2020 00:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 116.99940 * 2 1 4 4 O 1.20825 * 119.99894 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00025 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.46893 * 180.02562 * 5 3 2 7 7 C 1.37092 * 119.99644 * 264.08400 * 6 5 3 8 8 H 1.08005 * 119.99833 * 196.60507 * 7 6 5 9 9 C 1.38948 * 120.00441 * 16.60789 * 7 6 5 10 10 N 1.31414 * 119.99945 * 20.78346 * 9 7 6 11 11 Si 1.86803 * 120.00176 * 200.79101 * 9 7 6 12 12 H 1.48500 * 109.47206 * 59.99548 * 11 9 7 13 13 H 1.48505 * 109.47108 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46958 * 299.99577 * 11 9 7 15 15 C 1.34768 * 119.99920 * 84.08564 * 6 5 3 16 16 O 1.21295 * 120.00503 * 359.97438 * 15 6 5 17 17 C 1.50709 * 120.00005 * 179.97438 * 15 6 5 18 18 S 1.81400 * 109.47318 * 179.97438 * 17 15 6 19 19 C 1.81391 * 102.99889 * 180.02562 * 18 17 15 20 20 C 1.50705 * 109.47122 * 179.97438 * 19 18 17 21 21 C 1.38247 * 119.97286 * 269.72455 * 20 19 18 22 22 C 1.38200 * 120.02235 * 179.72158 * 21 20 19 23 23 C 1.38461 * 119.97079 * 0.57857 * 22 21 20 24 24 F 1.35108 * 120.01987 * 179.68200 * 23 22 21 25 25 C 1.38457 * 119.95124 * 359.69794 * 23 22 21 26 26 C 1.38196 * 119.97588 * 0.02562 * 25 23 22 27 27 H 1.09005 * 109.47023 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46737 * 299.99767 * 1 2 3 29 29 H 1.08996 * 109.46988 * 60.00393 * 1 2 3 30 30 H 1.08998 * 109.46840 * 59.99960 * 5 3 2 31 31 H 1.08998 * 109.46762 * 299.99543 * 5 3 2 32 32 H 0.97004 * 119.99738 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.46576 * 60.00232 * 17 15 6 34 34 H 1.08995 * 109.46996 * 300.00177 * 17 15 6 35 35 H 1.09004 * 109.47143 * 59.99869 * 19 18 17 36 36 H 1.09003 * 109.47366 * 300.00325 * 19 18 17 37 37 H 1.07999 * 119.98749 * 359.97438 * 21 20 19 38 38 H 1.07997 * 120.01387 * 180.25555 * 22 21 20 39 39 H 1.08004 * 120.01186 * 179.97438 * 25 23 22 40 40 H 1.07997 * 119.99011 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.2928 3.3031 -1.1805 8 1 4.8463 4.2305 -1.1721 9 6 3.8961 2.7419 -2.3882 10 7 2.9077 1.8764 -2.4172 11 14 4.7678 3.2177 -3.9703 12 1 6.2071 2.8668 -3.8673 13 1 4.1604 2.4844 -5.1099 14 1 4.6293 4.6795 -4.1915 15 6 4.0578 3.3593 1.1615 16 8 3.7821 2.8079 2.2061 17 6 4.4856 4.8044 1.1623 18 16 4.4879 5.4334 2.8638 19 6 5.0190 7.1560 2.6613 20 6 5.0713 7.8274 4.0095 21 6 3.9546 8.4776 4.5010 22 6 3.9997 9.0887 5.7398 23 6 5.1674 9.0597 6.4833 24 9 5.2144 9.6623 7.6916 25 6 6.2867 8.4131 5.9874 26 6 6.2377 7.7978 4.7510 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7806 0.8892 32 1 2.6305 1.4849 -3.2604 33 1 3.7905 5.3894 0.5600 34 1 5.4882 4.8867 0.7428 35 1 4.3105 7.6818 2.0211 36 1 6.0084 7.1799 2.2044 37 1 3.0456 8.5045 3.9185 38 1 3.1260 9.5930 6.1254 39 1 7.1982 8.3903 6.5664 40 1 7.1105 7.2931 4.3641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609992023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:31 Heat of formation + Delta-G solvation = -126.476520 kcal Electronic energy + Delta-G solvation = -26286.947295 eV Core-core repulsion = 22108.408318 eV Total energy + Delta-G solvation = -4178.538977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.03892 -39.51144 -39.24211 -38.29211 -35.48118 -34.68012 -32.60530 -31.71475 -31.30892 -30.03430 -27.92456 -26.79018 -26.08437 -24.62756 -23.22532 -21.76472 -20.48329 -19.35974 -17.85274 -17.39661 -16.64271 -16.53982 -16.42166 -15.94904 -15.76108 -15.53237 -15.38641 -15.24752 -14.54563 -14.47613 -14.32279 -14.15240 -13.86100 -13.63205 -13.30349 -12.86511 -12.81025 -12.49255 -12.48762 -12.10880 -11.75437 -11.62915 -11.54675 -11.38493 -11.27160 -11.16174 -10.86868 -10.69093 -10.57265 -9.84940 -9.67075 -9.62047 -9.27629 -9.09186 -8.78426 -8.61451 -8.08824 -7.24918 -6.62160 -4.12416 0.79347 1.07561 2.01769 2.92256 3.00332 3.10847 3.12121 3.39847 3.52917 3.64403 3.90024 3.99468 4.09478 4.51399 4.52546 4.56595 4.72186 4.86747 4.95824 5.10644 5.35791 5.49292 5.67666 5.71845 5.74459 5.75425 5.78536 5.83979 5.92341 5.94602 6.03163 6.05372 6.18762 6.34089 6.36592 6.56584 6.70602 7.18986 7.38006 7.49781 8.08925 8.84522 9.04813 9.20865 9.61724 10.44917 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.002551 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.592424 B =10974.474807 C =12224.180775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.485 3.515 4 O -0.499 6.499 5 C 0.158 3.842 6 N -0.424 5.424 7 C -0.342 4.342 8 H 0.103 0.897 9 C 0.040 3.960 10 N -0.865 5.865 11 Si 0.927 3.073 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.484 3.516 16 O -0.582 6.582 17 C -0.096 4.096 18 S -0.184 6.184 19 C -0.074 4.074 20 C -0.071 4.071 21 C -0.074 4.074 22 C -0.153 4.153 23 C 0.094 3.906 24 F -0.143 7.143 25 C -0.153 4.153 26 C -0.074 4.074 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.275 0.725 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.119 8.070 6.735 11.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.326 3.674 4 O -0.384 6.384 5 C 0.032 3.968 6 N -0.143 5.143 7 C -0.469 4.469 8 H 0.121 0.879 9 C -0.165 4.165 10 N -0.502 5.502 11 Si 0.753 3.247 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.198 1.198 15 C 0.272 3.728 16 O -0.467 6.467 17 C -0.246 4.246 18 S 0.045 5.955 19 C -0.222 4.222 20 C -0.072 4.072 21 C -0.093 4.093 22 C -0.172 4.172 23 C 0.074 3.926 24 F -0.121 7.121 25 C -0.172 4.172 26 C -0.094 4.094 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.143 0.857 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.373 7.426 8.003 11.427 hybrid contribution 0.249 1.048 -2.153 2.407 sum 3.622 8.475 5.850 10.916 Atomic orbital electron populations 1.22941 0.78625 1.01854 1.01670 1.86451 1.21743 1.35398 1.85673 1.23910 0.92245 0.80612 0.70644 1.90518 1.66486 1.36387 1.45002 1.20494 0.87350 0.85141 1.03771 1.43282 1.57089 1.08138 1.05790 1.19570 1.35240 1.09845 0.82289 0.87916 1.25233 0.94694 0.96909 0.99698 1.69837 1.22497 1.29667 1.28237 0.85997 0.79570 0.78850 0.80302 1.19608 1.20785 1.19782 1.19222 0.82749 0.86596 0.84232 1.90595 1.55010 1.69461 1.31664 1.23349 1.05629 0.99311 0.96359 1.87571 1.89612 1.06504 1.11832 1.22406 1.05172 0.97841 0.96751 1.19321 0.94130 0.98114 0.95641 1.20963 0.98222 0.95401 0.94760 1.21117 0.97383 1.03056 0.95623 1.17748 0.95536 0.97384 0.81911 1.91492 1.97070 1.81345 1.42235 1.21107 0.98144 1.00474 0.97500 1.20939 0.98068 0.97204 0.93171 0.89559 0.93090 0.92618 0.85723 0.89846 0.91436 0.87848 0.88327 0.89154 0.89187 0.84602 0.84654 0.84664 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.06 10.57 -39.24 -0.41 -8.47 16 3 C 0.48 11.93 6.13 36.01 0.22 12.15 16 4 O -0.50 -13.80 15.79 -18.75 -0.30 -14.10 16 5 C 0.16 3.72 5.14 -5.19 -0.03 3.70 16 6 N -0.42 -10.32 2.18 -116.09 -0.25 -10.57 16 7 C -0.34 -8.15 9.15 -14.94 -0.14 -8.29 16 8 H 0.10 2.24 6.55 -52.48 -0.34 1.90 16 9 C 0.04 0.96 4.90 -17.47 -0.09 0.87 16 10 N -0.87 -21.62 9.24 55.50 0.51 -21.11 16 11 Si 0.93 18.29 29.60 -169.99 -5.03 13.26 16 12 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 13 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 14 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 15 C 0.48 11.54 7.44 -10.98 -0.08 11.46 16 16 O -0.58 -15.31 15.54 5.54 0.09 -15.23 16 17 C -0.10 -1.83 4.87 36.01 0.18 -1.66 16 18 S -0.18 -3.21 20.86 -107.50 -2.24 -5.45 16 19 C -0.07 -0.91 6.07 36.01 0.22 -0.69 16 20 C -0.07 -0.82 5.14 -104.61 -0.54 -1.36 16 21 C -0.07 -0.80 9.70 -39.59 -0.38 -1.19 16 22 C -0.15 -1.60 10.03 -39.51 -0.40 -2.00 16 23 C 0.09 1.04 7.30 -39.42 -0.29 0.76 16 24 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 25 C -0.15 -1.57 10.03 -39.52 -0.40 -1.97 16 26 C -0.07 -0.78 9.70 -39.59 -0.38 -1.17 16 27 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 30 H 0.13 2.88 6.35 -51.93 -0.33 2.55 16 31 H 0.08 1.84 7.60 -51.93 -0.39 1.45 16 32 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 33 H 0.10 1.95 8.10 -51.92 -0.42 1.53 16 34 H 0.10 1.67 7.70 -51.93 -0.40 1.27 16 35 H 0.09 1.01 8.08 -51.92 -0.42 0.59 16 36 H 0.09 0.96 8.09 -51.92 -0.42 0.54 16 37 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 365.92 15.07 5.51 5.51 Total: -1.00 -31.48 365.92 -7.94 -39.42 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -4.82 Total: 5.89 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: -1.04 Total: 12.45 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.26 Total: -31.68 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.62 Total: -37.80 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.24 Total: -5.45 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.48 -7.94 -39.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609992023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.058 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds