Wall clock time and date at job start Wed Apr 1 2020 00:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 116.99940 * 2 1 4 4 O 1.20825 * 119.99894 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00025 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.46893 * 180.02562 * 5 3 2 7 7 C 1.37092 * 119.99644 * 264.08400 * 6 5 3 8 8 H 1.08005 * 119.99833 * 196.60507 * 7 6 5 9 9 C 1.38948 * 120.00441 * 16.60789 * 7 6 5 10 10 N 1.31414 * 119.99945 * 20.78346 * 9 7 6 11 11 Si 1.86803 * 120.00176 * 200.79101 * 9 7 6 12 12 H 1.48500 * 109.47206 * 59.99548 * 11 9 7 13 13 H 1.48505 * 109.47108 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46958 * 299.99577 * 11 9 7 15 15 C 1.34768 * 119.99920 * 84.08564 * 6 5 3 16 16 O 1.21295 * 120.00503 * 359.97438 * 15 6 5 17 17 C 1.50709 * 120.00005 * 179.97438 * 15 6 5 18 18 S 1.81400 * 109.47318 * 179.97438 * 17 15 6 19 19 C 1.81391 * 102.99889 * 180.02562 * 18 17 15 20 20 C 1.50705 * 109.47122 * 179.97438 * 19 18 17 21 21 C 1.38247 * 119.97286 * 269.72455 * 20 19 18 22 22 C 1.38200 * 120.02235 * 179.72158 * 21 20 19 23 23 C 1.38461 * 119.97079 * 0.57857 * 22 21 20 24 24 F 1.35108 * 120.01987 * 179.68200 * 23 22 21 25 25 C 1.38457 * 119.95124 * 359.69794 * 23 22 21 26 26 C 1.38196 * 119.97588 * 0.02562 * 25 23 22 27 27 H 1.09005 * 109.47023 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46737 * 299.99767 * 1 2 3 29 29 H 1.08996 * 109.46988 * 60.00393 * 1 2 3 30 30 H 1.08998 * 109.46840 * 59.99960 * 5 3 2 31 31 H 1.08998 * 109.46762 * 299.99543 * 5 3 2 32 32 H 0.97004 * 119.99738 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.46576 * 60.00232 * 17 15 6 34 34 H 1.08995 * 109.46996 * 300.00177 * 17 15 6 35 35 H 1.09004 * 109.47143 * 59.99869 * 19 18 17 36 36 H 1.09003 * 109.47366 * 300.00325 * 19 18 17 37 37 H 1.07999 * 119.98749 * 359.97438 * 21 20 19 38 38 H 1.07997 * 120.01387 * 180.25555 * 22 21 20 39 39 H 1.08004 * 120.01186 * 179.97438 * 25 23 22 40 40 H 1.07997 * 119.99011 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.2928 3.3031 -1.1805 8 1 4.8463 4.2305 -1.1721 9 6 3.8961 2.7419 -2.3882 10 7 2.9077 1.8764 -2.4172 11 14 4.7678 3.2177 -3.9703 12 1 6.2071 2.8668 -3.8673 13 1 4.1604 2.4844 -5.1099 14 1 4.6293 4.6795 -4.1915 15 6 4.0578 3.3593 1.1615 16 8 3.7821 2.8079 2.2061 17 6 4.4856 4.8044 1.1623 18 16 4.4879 5.4334 2.8638 19 6 5.0190 7.1560 2.6613 20 6 5.0713 7.8274 4.0095 21 6 3.9546 8.4776 4.5010 22 6 3.9997 9.0887 5.7398 23 6 5.1674 9.0597 6.4833 24 9 5.2144 9.6623 7.6916 25 6 6.2867 8.4131 5.9874 26 6 6.2377 7.7978 4.7510 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7806 0.8892 32 1 2.6305 1.4849 -3.2604 33 1 3.7905 5.3894 0.5600 34 1 5.4882 4.8867 0.7428 35 1 4.3105 7.6818 2.0211 36 1 6.0084 7.1799 2.2044 37 1 3.0456 8.5045 3.9185 38 1 3.1260 9.5930 6.1254 39 1 7.1982 8.3903 6.5664 40 1 7.1105 7.2931 4.3641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609992023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:30 Heat of formation + Delta-G solvation = -142.373053 kcal Electronic energy + Delta-G solvation = -26287.636621 eV Core-core repulsion = 22108.408318 eV Total energy + Delta-G solvation = -4179.228303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.90557 -41.35943 -40.14287 -40.02935 -37.31732 -36.56277 -33.57730 -33.46237 -32.10562 -31.71499 -29.53583 -27.85704 -27.59498 -26.40488 -24.02733 -22.68773 -22.23253 -21.16957 -19.15845 -18.64255 -18.49195 -18.19506 -17.40518 -17.32522 -17.20438 -16.99144 -16.62589 -16.36537 -16.20016 -16.09830 -15.89192 -15.06954 -14.81000 -14.72406 -14.44517 -14.34118 -14.30524 -14.20235 -13.65578 -13.43067 -13.13392 -13.11142 -13.00432 -12.86428 -12.62658 -12.50175 -12.44041 -12.14918 -11.95150 -11.59320 -11.54190 -10.95996 -10.90602 -10.63176 -10.07208 -9.94277 -9.51037 -8.59612 -8.41164 -5.97886 -0.15132 0.28053 0.82132 1.41163 1.51255 1.60582 1.66333 1.70263 1.76599 2.20061 2.32323 2.68592 2.84184 3.08935 3.27182 3.64093 3.72393 3.97470 4.07653 4.11660 4.22741 4.27566 4.31717 4.34255 4.39780 4.46840 4.54972 4.55115 4.61117 4.67981 4.73364 4.97913 4.99900 5.14587 5.23641 5.38961 5.50890 5.58533 5.68058 5.89679 6.26803 7.02371 7.17772 7.39245 7.80528 8.65936 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.002551 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.592424 B =10974.474807 C =12224.180775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.486 3.514 4 O -0.538 6.538 5 C 0.154 3.846 6 N -0.433 5.433 7 C -0.359 4.359 8 H 0.121 0.879 9 C -0.001 4.001 10 N -0.895 5.895 11 Si 0.998 3.002 12 H -0.260 1.260 13 H -0.289 1.289 14 H -0.267 1.267 15 C 0.468 3.532 16 O -0.616 6.616 17 C -0.083 4.083 18 S -0.236 6.236 19 C -0.052 4.052 20 C -0.086 4.086 21 C -0.079 4.079 22 C -0.157 4.157 23 C 0.082 3.918 24 F -0.147 7.147 25 C -0.155 4.155 26 C -0.075 4.075 27 H 0.135 0.865 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.125 0.875 31 H 0.090 0.910 32 H 0.273 0.727 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.181 9.101 6.168 12.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.293 6.293 3 C 0.329 3.671 4 O -0.426 6.426 5 C 0.028 3.972 6 N -0.152 5.152 7 C -0.486 4.486 8 H 0.138 0.862 9 C -0.203 4.203 10 N -0.533 5.533 11 Si 0.821 3.179 12 H -0.185 1.185 13 H -0.215 1.215 14 H -0.192 1.192 15 C 0.258 3.742 16 O -0.503 6.503 17 C -0.234 4.234 18 S -0.007 6.007 19 C -0.199 4.199 20 C -0.088 4.088 21 C -0.099 4.099 22 C -0.176 4.176 23 C 0.062 3.938 24 F -0.126 7.126 25 C -0.174 4.174 26 C -0.095 4.095 27 H 0.153 0.847 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.143 0.857 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.139 0.861 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.172 0.828 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.441 8.438 7.432 12.089 hybrid contribution -0.151 0.724 -1.882 2.022 sum 4.290 9.162 5.550 11.539 Atomic orbital electron populations 1.23301 0.76153 1.04914 1.01185 1.86422 1.24147 1.33742 1.84996 1.24079 0.92651 0.80798 0.69542 1.90483 1.67367 1.37724 1.47034 1.20558 0.87103 0.85556 1.03938 1.43543 1.56898 1.08409 1.06351 1.20056 1.35533 1.10685 0.82310 0.86186 1.26135 0.94846 0.96738 1.02628 1.69951 1.23710 1.30842 1.28761 0.84917 0.78620 0.78507 0.75870 1.18482 1.21474 1.19157 1.20008 0.82264 0.88362 0.83583 1.90556 1.56391 1.70679 1.32712 1.23161 1.06539 0.96087 0.97571 1.87699 1.90373 1.11394 1.11227 1.22420 1.06379 0.93466 0.97657 1.19400 0.94878 0.98779 0.95721 1.21149 0.98490 0.95277 0.95023 1.21323 0.97893 1.02913 0.95430 1.17992 0.96188 0.97706 0.81906 1.91480 1.97123 1.81479 1.42537 1.21349 0.98682 0.99795 0.97532 1.21167 0.98354 0.96893 0.93097 0.84714 0.93194 0.93534 0.85709 0.89212 0.91662 0.87873 0.86087 0.87947 0.87105 0.83706 0.83075 0.82753 0.83047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 10.56 113.37 1.20 2.49 16 2 O -0.38 -16.19 10.57 -51.36 -0.54 -16.73 16 3 C 0.49 24.40 6.13 71.24 0.44 24.83 16 4 O -0.54 -30.49 15.79 21.97 0.35 -30.14 16 5 C 0.15 7.41 5.14 85.63 0.44 7.85 16 6 N -0.43 -21.30 2.18 -639.59 -1.39 -22.69 16 7 C -0.36 -16.94 9.15 84.04 0.77 -16.17 16 8 H 0.12 5.07 6.55 -2.91 -0.02 5.05 16 9 C 0.00 -0.05 4.90 84.93 0.42 0.37 16 10 N -0.89 -44.96 9.24 21.66 0.20 -44.76 16 11 Si 1.00 36.66 29.60 68.60 2.03 38.69 16 12 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 13 H -0.29 -10.83 7.11 99.48 0.71 -10.13 16 14 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 15 C 0.47 22.58 7.44 87.66 0.65 23.24 16 16 O -0.62 -33.17 15.54 -3.08 -0.05 -33.22 16 17 C -0.08 -3.14 4.87 71.24 0.35 -2.79 16 18 S -0.24 -8.09 20.86 -56.49 -1.18 -9.27 16 19 C -0.05 -1.17 6.07 71.24 0.43 -0.73 16 20 C -0.09 -1.84 5.14 -19.86 -0.10 -1.94 16 21 C -0.08 -1.62 9.70 22.26 0.22 -1.40 16 22 C -0.16 -3.06 10.03 22.31 0.22 -2.84 16 23 C 0.08 1.70 7.30 22.38 0.16 1.87 16 24 F -0.15 -3.23 17.27 44.97 0.78 -2.45 16 25 C -0.15 -2.88 10.03 22.31 0.22 -2.66 16 26 C -0.08 -1.44 9.70 22.26 0.22 -1.22 16 27 H 0.13 3.22 8.14 -2.38 -0.02 3.20 16 28 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 29 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 30 H 0.13 5.89 6.35 -2.39 -0.02 5.88 16 31 H 0.09 4.08 7.60 -2.39 -0.02 4.07 16 32 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 33 H 0.10 3.84 8.10 -2.39 -0.02 3.82 16 34 H 0.12 3.91 7.70 -2.39 -0.02 3.89 16 35 H 0.10 2.06 8.08 -2.39 -0.02 2.04 16 36 H 0.11 2.04 8.09 -2.39 -0.02 2.02 16 37 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 38 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -68.78 365.92 6.89 -61.89 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 1.07 Total: 27.79 kcal Atomic # 6 Polarization: 25.26 SS G_CDS: 5.63 Total: 30.89 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -1.19 Total: -67.45 kcal Atomic # 8 Polarization: -79.84 SS G_CDS: -0.24 Total: -80.09 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.78 Total: -2.45 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.18 Total: -9.27 kcal Total: -68.78 6.89 -61.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609992023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.483 kcal (2) G-P(sol) polarization free energy of solvation -68.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds